Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 0.0e+00 1124.0 593 100.0
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 1.9e-275 952.2 591 84.3
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 4.2e-275 951.0 590 85.3
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 3.9e-273 944.5 592 85.1
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 8.7e-273 943.3 592 84.3
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 9.6e-272 939.9 592 83.1
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.8e-271 938.3 590 84.1
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 3.7e-271 937.9 597 82.7
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 8.2e-271 936.8 592 83.8
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 6.9e-270 933.7 588 82.7
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 6.9e-270 933.7 592 83.6
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.4e-269 931.4 592 82.9
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 4.5e-269 931.0 590 83.1
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 1.0e-268 929.9 593 81.8
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 1.0e-268 929.9 590 81.7
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 3.8e-268 927.9 598 82.1
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 8.5e-268 926.8 594 82.3
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.1e-267 926.4 593 83.0
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 4.2e-267 924.5 591 81.4
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 7.2e-267 923.7 595 82.2
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 7.2e-267 923.7 589 81.2
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 3.0e-265 918.3 591 81.0
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 2.5e-264 915.2 589 80.5
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 4.3e-264 914.4 590 81.2
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 7.4e-264 913.7 591 80.2
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 9.7e-264 913.3 587 80.2
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 1.3e-263 912.9 592 81.9
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 2.2e-263 912.1 592 81.2
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.8e-263 911.8 591 80.2
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 2.8e-263 911.8 591 80.7
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 4.8e-263 911.0 591 80.2
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 6.3e-263 910.6 591 79.9
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 2.4e-262 908.7 562 83.3
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 4.1e-262 907.9 590 80.5
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 1.5e-261 906.0 596 80.0
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 2.6e-261 905.2 590 80.0
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 3.4e-261 904.8 590 80.2
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 7.7e-261 903.7 587 79.9
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 1.1e-259 899.8 589 80.3
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 2.5e-259 898.7 590 80.0
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 2.5e-259 898.7 591 79.7
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 7.2e-259 897.1 587 79.7
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 1.2e-258 896.3 591 80.2
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 1.6e-258 896.0 591 80.4
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 6.1e-258 894.0 595 79.3
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 1.1e-256 889.8 628 76.9
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 7.4e-256 887.1 597 78.9
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 1.3e-255 886.3 596 78.9
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 4.8e-255 884.4 565 82.7
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 1.8e-254 882.5 587 79.4
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 2.4e-254 882.1 591 77.7
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 2.4e-254 882.1 591 78.3
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 2.0e-253 879.0 592 78.5
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 5.9e-253 877.5 591 77.8
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.0e-252 876.7 691 70.2
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 1.3e-252 876.3 591 78.0
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 1.7e-252 875.9 592 77.9
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 2.2e-252 875.5 593 77.6
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 3.8e-252 874.8 593 77.4
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 3.8e-252 874.8 593 77.2
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 5.0e-252 874.4 593 77.2
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 6.5e-252 874.0 590 78.3
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 6.5e-252 874.0 697 69.2
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 1.9e-251 872.5 591 77.3
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 5.5e-251 870.9 591 77.2
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.6e-250 868.2 592 77.5
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 1.8e-249 865.9 596 77.0
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 2.3e-249 865.5 590 77.3
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 2.3e-249 865.5 593 76.6
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 3.9e-249 864.8 593 76.7
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 3.9e-249 864.8 596 76.5
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 6.7e-249 864.0 590 77.1
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 8.8e-249 863.6 596 76.8
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.1e-248 863.2 592 76.5
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 1.5e-248 862.8 595 77.1
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 2.6e-248 862.1 596 76.2
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 1.7e-247 859.4 592 75.8
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 2.2e-247 859.0 591 76.3
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 6.3e-247 857.4 591 75.8
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 9.1e-246 853.6 591 75.5
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 3.5e-245 851.7 593 75.5
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 1.0e-244 850.1 593 75.9
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 1.7e-244 849.4 591 76.6
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 2.2e-244 849.0 576 78.0
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 2.9e-244 848.6 593 76.4
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 2.9e-244 848.6 508 86.2
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 3.8e-244 848.2 568 78.9
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 5.0e-244 847.8 594 75.4
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 6.5e-244 847.4 593 77.6
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 1.9e-243 845.9 592 75.2
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 2.7e-242 842.0 594 74.6
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.0e-241 840.1 576 76.4
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.0e-241 840.1 577 76.6
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 8.8e-241 837.0 564 77.5
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 8.8e-241 837.0 593 75.4
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 2.6e-240 835.5 593 75.2
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 3.3e-240 835.1 590 75.4
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 6.3e-239 830.9 613 72.9
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 5.3e-238 827.8 593 74.9
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 3.5e-237 825.1 595 75.1
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.5e-235 818.9 591 72.9
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 1.2e-234 816.6 592 73.1
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 8.0e-234 813.9 593 73.2
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 1.4e-233 813.1 593 74.2
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 2.3e-233 812.4 595 74.3
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 1.2e-232 810.1 595 73.9
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 2.2e-231 805.8 593 72.0
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 1.8e-230 802.7 593 72.3
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 3.1e-230 802.0 595 73.4
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 4.2e-227 791.6 511 80.4
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 5.5e-227 791.2 593 72.0
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 9.5e-227 790.4 595 73.1
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 2.8e-218 762.3 568 71.8
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 3.6e-218 761.9 592 68.1
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.8e-214 749.6 569 70.5
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 5.0e-212 741.5 599 67.8
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 6.2e-210 734.6 604 67.7
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 3.1e-209 732.3 591 68.4
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.3e-207 726.9 592 68.1
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 3.3e-203 712.2 589 66.0
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 1.2e-189 667.2 489 71.6
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 4.7e-186 655.2 447 76.5
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 1.8e-185 653.3 433 80.1
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 6.0e-181 638.3 478 70.3
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 1.1e-174 617.5 507 69.0
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 5.1e-164 582.0 530 60.8
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 3.7e-162 575.9 379 80.2
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 7.9e-157 558.1 372 78.0
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 2.6e-152 543.1 575 59.1
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 2.1e-141 506.9 585 48.2
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.8e-137 493.8 400 69.0
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 2.7e-133 479.9 320 77.8
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 3.8e-119 433.0 309 75.4
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 8.0e-117 425.2 252 86.9
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 1.4e-108 397.9 512 46.1
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 9.2e-97 358.6 556 41.4
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 5.0e-95 352.8 229 77.7
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.2e-92 342.8 227 81.5
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.9e-81 307.8 200 77.5
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 1.2e-77 295.0 210 71.4
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 2.1e-64 251.1 257 51.8
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 2.9e-58 230.7 327 42.2
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 1.1e-49 202.2 114 86.8
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 3.0e-47 194.1 268 44.8
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 3.1e-44 184.1 129 72.1
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 6.1e-32 143.3 137 59.9
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 9.4e-25 119.4 106 63.2
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 7.9e-24 116.3 205 42.0
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 2.6e-22 111.3 104 58.7
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 2.8e-21 107.8 132 53.8
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 1.1e-20 105.9 102 58.8
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.3e-18 99.0 50 86.0
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 2.1e-16 91.7 52 88.5
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 2.1e-16 91.7 52 88.5
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 1.5e-14 85.5 52 84.6
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 2.8e-13 81.3 71 60.6
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 2.8e-13 81.3 72 59.7
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.1e-12 79.3 65 66.2
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 3.1e-12 77.8 72 58.3
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 5.9e-11 73.6 78 53.8
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 3.6e-08 64.3 57 52.6
Actinidia28545 Actinidia chinensis HOM05D004172 ORTHO05D018193 4.7e-08 63.9 98 43.9
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 1.4e-07 62.4 30 93.3
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 1.4e-07 62.4 30 93.3
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 4.4e-06 57.4 246 26.8


User provided reference genes

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