Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01197 Eucalyptus grandis HOM05D005299 ORTHO05D006621 4.3e-203 711.1 350 100.0
Ciclev10031926m.g Citrus clementina HOM05D005299 ORTHO05D006621 4.1e-137 491.9 350 68.3
PGR142G4033 Punica granatum HOM05D005299 ORTHO05D006621 7.0e-137 491.1 350 68.6
Thecc.01G160700 Theobroma cacao HOM05D005299 ORTHO05D006621 4.5e-136 488.4 351 67.8
Atru.chr11.1755 Acer truncatum HOM05D005299 ORTHO05D006621 1.0e-135 487.3 350 67.1
Sabra02G0143400 Salix brachista HOM05D005299 ORTHO05D006621 1.7e-135 486.5 353 66.3
Potri.002G168500 Populus trichocarpa HOM05D005299 ORTHO05D006621 8.6e-135 484.2 353 67.1
COL.COLO4_33736 Corchorus olitorius HOM05D005299 ORTHO05D006621 3.3e-134 482.3 350 66.3
Gohir.A05G378300 Gossypium hirsutum HOM05D005299 ORTHO05D006621 1.0e-132 477.2 351 66.4
QL08p043914 Quercus lobata HOM05D005299 ORTHO05D006621 5.2e-132 474.9 349 65.3
Duzib187G1515 Durio zibethinus HOM05D005299 ORTHO05D006621 6.8e-132 474.6 351 66.4
Manes.01G128400 Manihot esculenta HOM05D005299 ORTHO05D006621 6.8e-132 474.6 350 68.3
Gorai.012G042000 Gossypium raimondii HOM05D005299 ORTHO05D006621 8.9e-132 474.2 351 66.4
Phvul.008G190800 Phaseolus vulgaris HOM05D005299 ORTHO05D006621 1.2e-131 473.8 352 63.6
Haze_13488 Corylus avellana HOM05D005299 ORTHO05D006621 2.0e-131 473.0 350 63.7
Gohir.D04G037200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 7.5e-131 471.1 351 66.1
Gohir.A05G378200 Gossypium hirsutum HOM05D005299 ORTHO05D006621 9.8e-131 470.7 351 66.1
Glyma.14G027500 Glycine max HOM05D005299 ORTHO05D006621 1.7e-130 469.9 355 63.7
CSS0023426 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 2.8e-130 469.2 351 65.2
Gorai.012G042100 Gossypium raimondii HOM05D005299 ORTHO05D006621 6.3e-130 468.0 351 65.0
Cfa022915 Carpinus fangiana HOM05D005299 ORTHO05D006621 1.8e-129 466.5 350 63.1
LjContig00310g0013825 Lotus japonicus HOM05D005299 ORTHO05D006621 1.7e-127 459.9 350 61.7
Prupe.3G170900 Prunus persica HOM05D005299 ORTHO05D006621 6.6e-127 458.0 348 63.2
MELO3C019690.2 Cucumis melo HOM05D005299 ORTHO05D006621 9.5e-126 454.1 350 63.7
MD09G1154100 Malus domestica HOM05D005299 ORTHO05D006621 2.8e-125 452.6 348 61.2
VMungo0647G0660 Vigna mungo HOM05D005299 ORTHO05D006621 2.8e-125 452.6 346 61.6
ClCG02G018370 Citrullus lanatus HOM05D005299 ORTHO05D006621 3.6e-125 452.2 348 63.5
Cpa.g.sc50.76 Carica papaya HOM05D005299 ORTHO05D006621 4.7e-125 451.8 351 63.5
Rhsim06G0118500 Rhododendron simsii HOM05D005299 ORTHO05D006621 1.0e-124 450.7 349 61.3
TPR.G12682 Trifolium pratense HOM05D005299 ORTHO05D006621 5.2e-124 448.4 359 60.2
CsaV3_6G015800 Cucumis sativus L. HOM05D005299 ORTHO05D006621 6.8e-124 448.0 343 63.6
FAN02G4296 Fragaria x ananassa HOM05D005299 ORTHO05D006621 8.9e-124 447.6 349 61.9
Lalb_Chr04g0248721 Lupinus albus HOM05D005299 ORTHO05D006621 8.9e-124 447.6 297 68.7
Medtr5g091790 Medicago truncatula HOM05D005299 ORTHO05D006621 8.9e-124 447.6 297 67.7
FAN14G2921 Fragaria x ananassa HOM05D005299 ORTHO05D006621 1.2e-123 447.2 348 61.8
FvH4_6g38090 Fragaria vesca HOM05D005299 ORTHO05D006621 1.5e-123 446.8 348 61.8
FAN05G0697 Fragaria x ananassa HOM05D005299 ORTHO05D006621 2.6e-123 446.0 348 61.8
RcHm_v2.0_Chr2g0151151 Rosa chinensis HOM05D005299 ORTHO05D006621 4.4e-123 445.3 348 61.2
Sed0016784 Sechium edule HOM05D005299 ORTHO05D006621 9.8e-123 444.1 350 62.3
Hma1.2p1_0036F.1_g023590 Hydrangea macrophylla HOM05D005299 ORTHO05D006621 1.7e-122 443.4 351 60.7
arahy.Tifrunner.gnm1.ann1.W6YWPQ Arachis hypogaea HOM05D005299 ORTHO05D006621 2.9e-122 442.6 365 58.9
Aqoxy4G00177 Aquilegia oxysepala HOM05D005299 ORTHO05D006621 6.4e-122 441.4 348 58.3
CAN.G585.55 Capsicum annuum HOM05D005299 ORTHO05D006621 8.3e-122 441.0 352 61.6
arahy.Tifrunner.gnm1.ann1.L8S1IT Arachis hypogaea HOM05D005299 ORTHO05D006621 1.1e-121 440.7 368 59.2
GSVIVG01000796001 Vitis vinifera HOM05D005299 ORTHO05D006621 1.9e-121 439.9 291 71.5
Ca_06288_v3 Cicer arietinum L. HOM05D005299 ORTHO05D006621 3.2e-121 439.1 299 66.9
Cc05_g09280 Coffea canephora HOM05D005299 ORTHO05D006621 1.2e-120 437.2 351 61.5
CANSAT64G0352 Cannabis sativa HOM05D005299 ORTHO05D006621 3.5e-120 435.6 350 59.1
Lj1P624T16 Lonicera japonica HOM05D005299 ORTHO05D006621 6.0e-120 434.9 337 61.7
MBI07_g30205_MAGBIO Magnolia biondii HOM05D005299 ORTHO05D006621 1.0e-119 434.1 353 61.8
Psat2g014680 Pisum sativum HOM05D005299 ORTHO05D006621 5.0e-119 431.8 355 58.6
DCAR_009793 Daucus carota HOM05D005299 ORTHO05D006621 8.6e-119 431.0 352 59.4
Peaxi162Scf00154g00511 Petunia axillaris HOM05D005299 ORTHO05D006621 8.6e-119 431.0 300 66.3
Glyma.02G287500 Glycine max HOM05D005299 ORTHO05D006621 1.1e-118 430.6 354 59.6
Nitab4.5_0001675g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.5e-118 429.5 343 61.2
SGA_v2.0_scaffold130G34359 Striga asiatica HOM05D005299 ORTHO05D006621 2.5e-118 429.5 351 59.0
CiPaw.04G135600 Carya illinoinensis HOM05D005299 ORTHO05D006621 1.2e-117 427.2 354 58.8
PSO675G1896 Papaver somniferum HOM05D005299 ORTHO05D006621 4.7e-117 425.2 351 59.5
Sopen07g029300 Solanum pennellii HOM05D005299 ORTHO05D006621 6.2e-117 424.9 352 60.2
TAR624G0522 Trochodendron aralioides HOM05D005299 ORTHO05D006621 8.0e-117 424.5 350 59.4
Migut.M00515 Erythranthe guttata HOM05D005299 ORTHO05D006621 1.1e-116 424.1 359 59.9
MSTRG.15054 Avicennia marina HOM05D005299 ORTHO05D006621 1.8e-116 423.3 347 58.8
COL.COLO4_33735 Corchorus olitorius HOM05D005299 ORTHO05D006621 1.8e-116 423.3 287 70.4
Nn3g20966 Nelumbo nucifera HOM05D005299 ORTHO05D006621 2.3e-116 422.9 342 59.9
THA.LOC104803188 Tarenaya hassleriana HOM05D005299 ORTHO05D006621 4.0e-116 422.2 353 60.6
PSO541G3070 Papaver somniferum HOM05D005299 ORTHO05D006621 5.2e-116 421.8 351 58.7
PGSC0003DMG400017296 Solanum tuberosum HOM05D005299 ORTHO05D006621 8.9e-116 421.0 298 66.1
Solyc07g055940.3 Solanum lycopersicum HOM05D005299 ORTHO05D006621 2.6e-115 419.5 343 60.3
Oeu006146.1 Olea europaea HOM05D005299 ORTHO05D006621 5.8e-115 418.3 351 58.1
SalBow8G4073 Salvia bowleyana HOM05D005299 ORTHO05D006621 4.9e-114 415.2 335 57.6
Nitab4.5_0001402g0040 Nicotiana tabacum HOM05D005299 ORTHO05D006621 8.3e-114 414.5 321 61.7
Dinv32183 Davidia involucrata HOM05D005299 ORTHO05D006621 4.1e-113 412.1 305 63.0
CAN.G1191.5 Capsicum annuum HOM05D005299 ORTHO05D006621 2.7e-112 409.5 296 62.8
Carub.0005s2558 Capsella rubella HOM05D005299 ORTHO05D006621 5.0e-111 405.2 352 58.0
AT3G58800 Arabidopsis thaliana HOM05D005299 ORTHO05D006621 1.5e-110 403.7 350 58.6
Lsat_1_v5_gn_8_32101 Lactuca sativa HOM05D005299 ORTHO05D006621 3.6e-109 399.1 334 56.9
Sp5g04040 Schrenkiella parvula HOM05D005299 ORTHO05D006621 2.3e-108 396.4 350 57.1
Sc04g0008260 Simmondsia chinensis HOM05D005299 ORTHO05D006621 6.8e-108 394.8 329 57.4
CARHR169190 Cardamine hirsuta HOM05D005299 ORTHO05D006621 3.4e-107 392.5 350 56.0
Thhalv10006079m.g Eutrema salsugineum HOM05D005299 ORTHO05D006621 3.4e-107 392.5 350 57.1
HanXRQChr12g0369651 Helianthus annuus HOM05D005299 ORTHO05D006621 3.4e-107 392.5 347 54.5
A09p51350 Brassica napus HOM05D005299 ORTHO05D006621 1.7e-106 390.2 351 56.7
BraA09t40576Z Brassica rapa HOM05D005299 ORTHO05D006621 1.7e-106 390.2 351 56.7
AL5G40590 Arabidopsis lyrata HOM05D005299 ORTHO05D006621 2.2e-106 389.8 350 56.3
ATR0737G056 Amborella trichopoda HOM05D005299 ORTHO05D006621 6.4e-106 388.3 300 60.0
BolC8t51012H Brassica oleracea HOM05D005299 ORTHO05D006621 5.4e-105 385.2 350 55.7
C08p34130 Brassica napus HOM05D005299 ORTHO05D006621 9.2e-105 384.4 350 56.0
BcaC07g40297 Brassica carinata HOM05D005299 ORTHO05D006621 1.6e-104 383.6 350 56.0
Aa31LG10G13380 Aethionema arabicum HOM05D005299 ORTHO05D006621 3.5e-104 382.5 285 63.2
BcaC07g40228 Brassica carinata HOM05D005299 ORTHO05D006621 3.5e-104 382.5 352 55.4
HPP92_007777 Vanilla planifolia HOM05D005299 ORTHO05D006621 6.6e-103 378.3 289 63.7
SEGI_33032 Sequoiadendron giganteum HOM05D005299 ORTHO05D006621 2.8e-101 372.9 352 53.4
unitig_747.g21613 Utricularia gibba HOM05D005299 ORTHO05D006621 1.1e-97 360.9 332 50.6
SHI07041 Sapria himalayana HOM05D005299 ORTHO05D006621 1.0e-95 354.4 327 53.5
Ah.01g004630 Amaranthus hybridus HOM05D005299 ORTHO05D006621 1.7e-95 353.6 351 50.7
Peaxi162Scf00035g00313 Petunia axillaris HOM05D005299 ORTHO05D006621 3.3e-94 349.4 297 56.9
AUR62042721 Chenopodium quinoa HOM05D005299 ORTHO05D006621 4.3e-94 349.0 351 47.6
Nitab4.5_0013539g0010 Nicotiana tabacum HOM05D005299 ORTHO05D006621 4.3e-94 349.0 337 52.8
EL10Ac6g14080 Beta vulgaris HOM05D005299 ORTHO05D006621 4.7e-93 345.5 293 57.0
AUR62028463 Chenopodium quinoa HOM05D005299 ORTHO05D006621 6.2e-93 345.1 352 48.6
Hund04227 Selenicereus undatus HOM05D005299 ORTHO05D006621 1.2e-91 340.9 287 56.4
ECA233G0136 Erigeron canadensis HOM05D005299 ORTHO05D001423 1.6e-88 330.5 250 61.2
CSS0024030 Camellia sinensis var. sinensis HOM05D005299 ORTHO05D006621 1.0e-87 327.8 338 51.2
Nitab4.5_0002027g0150 Nicotiana tabacum HOM05D005299 ORTHO05D006621 2.3e-79 300.1 220 64.1
HPP92_007800 Vanilla planifolia HOM05D005299 ORTHO05D006621 1.5e-75 287.3 219 63.9
Os02g0230200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 8.7e-71 271.6 290 49.0
Os01g0748200 Oryza sativa ssp. japonica HOM05D005299 ORTHO05D006621 4.3e-70 269.2 334 41.6
SMO143G0231 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 2.1e-69 266.9 287 43.6
Zm00001eb204700 Zea mays HOM05D005299 ORTHO05D006621 2.1e-69 266.9 301 46.2
Zm00001eb153130 Zea mays HOM05D005299 ORTHO05D006621 1.5e-67 260.8 285 45.3
Mapoly0101s0004 Marchantia polymorpha HOM05D005299 ORTHO05D006621 1.2e-64 251.1 308 41.6
Pp3c3_20150 Physcomitrium patens HOM05D005299 ORTHO05D006621 1.2e-64 251.1 336 40.5
MD17G1140700 Malus domestica HOM05D005299 ORTHO05D006621 6.0e-64 248.8 297 45.8
Gohir.D04G037301 Gossypium hirsutum HOM05D005299 ORTHO05D006621 6.5e-58 228.8 154 71.4
HanXRQChr12g0369671 Helianthus annuus HOM05D005299 ORTHO05D006621 2.1e-56 223.8 190 53.7
AagrBONN_evm.TU.Sc2ySwM_117.611 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.1e-49 201.4 286 38.5
AagrBONN_evm.TU.Sc2ySwM_344.2434 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.4e-49 201.1 303 38.6
AagrBONN_evm.TU.Sc2ySwM_362.595 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.1e-48 197.2 312 38.5
AagrBONN_evm.TU.Sc2ySwM_344.3512 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.6e-48 196.4 293 37.5
AagrBONN_evm.TU.Sc2ySwM_228.4866 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.0e-47 194.9 315 36.2
Pp3c1_7220 Physcomitrium patens HOM05D005299 ORTHO05D006621 1.8e-44 184.1 282 34.8
AagrBONN_evm.TU.Sc2ySwM_362.1230 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.0e-42 176.0 250 38.4
AagrBONN_evm.TU.Sc2ySwM_228.4947 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.2e-41 172.9 290 36.6
AagrBONN_evm.TU.Sc2ySwM_117.3041__3042 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.7e-40 170.2 308 34.1
AagrBONN_evm.TU.Sc2ySwM_228.5465 Anthoceros agrestis HOM05D005299 ORTHO05D006621 8.0e-40 168.7 306 35.0
AagrBONN_evm.TU.Sc2ySwM_228.2643 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.0e-39 168.3 296 36.8
SMO356G0525 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 8.8e-39 165.2 284 33.8
AagrBONN_evm.TU.Sc2ySwM_344.1994 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-38 164.5 309 31.1
AagrBONN_evm.TU.Sc2ySwM_362.723 Anthoceros agrestis HOM05D005299 ORTHO05D006621 1.5e-38 164.5 238 38.2
AagrBONN_evm.TU.Sc2ySwM_362.647 Anthoceros agrestis HOM05D005299 ORTHO05D006621 9.7e-38 161.8 296 35.5
AagrBONN_evm.TU.Sc2ySwM_368.2564 Anthoceros agrestis HOM05D005299 ORTHO05D006621 3.1e-36 156.8 297 34.3
SMO304G0008 Selaginella moellendorffii HOM05D005299 ORTHO05D006621 5.9e-35 152.5 294 31.3
AagrBONN_evm.TU.Sc2ySwM_344.988 Anthoceros agrestis HOM05D005299 ORTHO05D006621 5.0e-34 149.4 292 31.8
AagrBONN_evm.TU.Sc2ySwM_368.682 Anthoceros agrestis HOM05D005299 ORTHO05D006621 6.5e-34 149.1 293 31.7
AagrBONN_evm.TU.Sc2ySwM_368.683 Anthoceros agrestis HOM05D005299 ORTHO05D006621 2.4e-28 130.6 293 30.0
Cre16.g692650 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 4.5e-27 126.3 322 28.0
AagrBONN_evm.TU.Sc2ySwM_368.684 Anthoceros agrestis HOM05D005299 ORTHO05D006621 4.7e-24 116.3 273 28.9
MCO16G314 Micromonas commoda HOM05D005299 ORTHO05D006621 7.7e-19 99.0 277 26.7
CBR_g37320 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-13 80.5 66 50.0
HanXRQChr17g0539561 Helianthus annuus HOM05D005299 ORTHO05D006621 1.2e-11 75.1 40 72.5
Cre04.g231712 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 6.6e-10 69.3 152 30.3
Cre04.g231810 Chlamydomonas reinhardtii HOM05D005299 ORTHO05D006621 2.8e-08 63.9 74 39.2
ECA233G3003 Erigeron canadensis HOM05D000038 ORTHO05D000423 3.1e-07 60.5 97 37.1
AagrBONN_evm.TU.Sc2ySwM_117.3082 Anthoceros agrestis HOM05D005299 ORTHO05D072579 5.2e-07 59.7 135 28.1


User provided reference genes

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