Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 9.9e-136 486.9 262 100.0
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 6.6e-124 447.6 262 88.9
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 6.6e-124 447.6 262 89.7
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 4.3e-123 444.9 262 88.5
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 7.3e-123 444.1 262 89.3
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 9.6e-123 443.7 262 89.3
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 9.6e-123 443.7 262 87.8
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.3e-122 443.4 262 87.8
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.3e-122 443.4 262 87.8
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.3e-122 443.4 262 87.8
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 1.6e-122 443.0 262 87.8
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 2.1e-122 442.6 262 87.4
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.6e-122 441.8 262 88.2
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 3.6e-122 441.8 262 88.5
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 8.1e-122 440.7 262 87.8
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 5.3e-121 438.0 262 87.0
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 5.3e-121 438.0 262 86.6
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 86.3
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 6.9e-121 437.6 262 86.3
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 87.0
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 86.6
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 88.2
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.5e-120 436.4 262 86.3
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 2.0e-120 436.0 262 85.9
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 4.5e-120 434.9 262 87.0
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 7.6e-120 434.1 262 86.3
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 86.3
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 1.3e-119 433.3 262 87.8
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 1.7e-119 433.0 262 86.3
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 2.2e-119 432.6 262 87.0
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 86.3
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 2.9e-119 432.2 262 87.0
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 87.0
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 4.9e-119 431.4 262 85.9
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 86.3
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 6.4e-119 431.0 262 86.3
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 6.4e-119 431.0 261 85.4
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 86.6
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.1e-118 430.3 262 85.1
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.4e-118 429.9 262 85.9
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 1.4e-118 429.9 262 86.3
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 1.9e-118 429.5 262 84.4
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 84.4
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 3.2e-118 428.7 262 83.6
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 4.2e-118 428.3 262 84.0
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 86.3
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 85.5
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 84.4
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 85.5
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 85.5
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 84.7
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 84.7
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 85.1
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 84.7
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 85.5
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 84.4
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 82.4
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 82.8
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 83.6
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 1.8e-116 422.9 262 84.4
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 84.4
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 3.0e-116 422.2 262 84.0
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 3.9e-116 421.8 262 85.1
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 5.1e-116 421.4 259 86.1
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 84.4
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 8.7e-116 420.6 262 83.6
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 1.1e-115 420.2 263 84.4
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 83.2
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 1.5e-115 419.9 263 84.4
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.5e-115 419.1 262 83.2
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 4.3e-115 418.3 262 83.2
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 82.4
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 82.8
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 82.8
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 1.6e-114 416.4 262 83.2
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 1.6e-114 416.4 262 83.2
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.6e-114 416.4 262 84.0
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 2.8e-114 415.6 263 83.7
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 3.7e-114 415.2 263 83.3
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 4.8e-114 414.8 264 83.7
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 84.0
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 8.1e-114 414.1 264 83.3
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.1e-113 413.7 262 81.7
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 5.3e-113 411.4 262 80.2
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 5.8e-112 407.9 262 80.5
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 5.8e-112 407.9 263 84.0
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 5.8e-112 407.9 264 82.6
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 7.6e-112 407.5 255 82.4
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 7.6e-112 407.5 262 82.1
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 9.9e-112 407.1 262 82.1
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 9.9e-112 407.1 263 84.0
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 1.7e-111 406.4 247 87.0
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 3.8e-111 405.2 247 86.6
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 5.5e-110 401.4 262 78.2
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 1.0e-108 397.1 262 79.8
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 1.3e-108 396.7 263 78.7
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 2.3e-108 396.0 262 79.4
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 2.3e-108 396.0 264 80.7
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 3.9e-108 395.2 262 79.8
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 5.1e-108 394.8 262 79.4
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 6.7e-108 394.4 270 78.1
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 1.3e-106 390.2 255 80.4
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 2.1e-106 389.4 262 77.5
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 2.8e-106 389.0 263 80.6
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 6.2e-106 387.9 263 80.6
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 8.2e-106 387.5 262 76.3
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 8.2e-106 387.5 262 77.1
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 8.2e-106 387.5 262 77.1
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 8.2e-106 387.5 262 77.1
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 8.2e-106 387.5 262 77.1
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 8.2e-106 387.5 262 77.5
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 1.1e-105 387.1 263 80.6
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 1.4e-105 386.7 246 83.7
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 1.4e-105 386.7 262 77.1
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 1.4e-105 386.7 262 77.1
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 1.4e-105 386.7 262 77.5
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 2.4e-105 386.0 262 77.1
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 2.4e-105 386.0 262 76.7
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 2.4e-105 386.0 262 76.7
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 6.9e-105 384.4 262 76.7
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 9.0e-105 384.0 262 76.7
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 9.0e-105 384.0 262 76.7
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 9.0e-105 384.0 262 76.7
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 2.6e-104 382.5 262 76.3
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 5.8e-104 381.3 263 76.4
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 5.8e-104 381.3 263 76.4
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 5.8e-104 381.3 263 76.4
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.3e-103 380.2 270 74.4
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.3e-100 369.4 263 76.8
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 5.1e-100 368.2 248 78.6
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 5.1e-100 368.2 264 77.3
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 3.3e-99 365.5 262 74.8
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 5.7e-99 364.8 262 75.6
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 8.2e-98 360.9 249 75.1
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 6.9e-97 357.8 218 86.2
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 8.5e-95 350.9 210 87.6
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 4.2e-94 348.6 242 80.2
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 7.2e-94 347.8 234 77.8
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 9.4e-94 347.4 226 78.8
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.1e-93 346.3 214 86.4
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.0e-92 342.4 236 73.7
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 4.3e-91 338.6 223 77.1
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 4.3e-91 338.6 262 70.6
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 6.3e-90 334.7 263 66.5
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 8.2e-90 334.3 265 68.7
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 3.7e-82 308.9 301 59.8
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 3.1e-81 305.8 267 62.9
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.7e-79 300.1 250 68.4
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 4.2e-78 295.4 247 68.0
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 5.5e-78 295.0 251 60.6
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 2.1e-77 293.1 250 67.2
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 2.4e-73 279.6 205 75.1
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 7.0e-73 278.1 208 69.7
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 5.5e-70 268.5 263 59.3
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 4.7e-69 265.4 270 57.8
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 8.0e-69 264.6 262 61.1
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 6.3e-66 255.0 211 64.5
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.1e-61 240.0 235 62.1
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 2.7e-56 223.0 244 51.2
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.1e-54 217.6 130 83.8
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.3e-52 209.9 120 90.8
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 8.9e-52 208.0 244 50.4
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 4.1e-49 199.1 138 76.8
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 7.3e-46 188.3 179 59.8
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 3.6e-45 186.0 118 82.2
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 3.4e-35 152.9 141 62.4
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 3.4e-35 152.9 191 49.2
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 1.6e-32 144.1 96 77.1
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 3.5e-24 116.3 69 88.4


User provided reference genes

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