Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 6.8e-43 179.1 403 100.0
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 1.3e-17 95.1 69 60.9
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 2.2e-17 94.4 71 64.8
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 2.2e-17 94.4 69 60.9
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 2.9e-17 94.0 70 68.6
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 2.9e-17 94.0 71 66.2
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 3.7e-17 93.6 71 60.6
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 4.9e-17 93.2 68 61.8
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 4.9e-17 93.2 68 61.8
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 8.3e-17 92.4 71 66.2
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 1.1e-16 92.0 71 63.4
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 1.1e-16 92.0 71 60.6
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 1.1e-16 92.0 70 60.0
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 1.4e-16 91.7 69 65.2
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 1.4e-16 91.7 69 65.2
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 2.4e-16 90.9 68 66.2
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 3.2e-16 90.5 69 63.8
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 3.2e-16 90.5 71 63.4
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 3.2e-16 90.5 67 65.7
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 3.2e-16 90.5 71 64.8
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 4.1e-16 90.1 71 63.4
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 5.4e-16 89.7 66 62.1
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 7.1e-16 89.4 71 62.0
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 7.1e-16 89.4 71 63.4
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 7.1e-16 89.4 71 63.4
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 7.1e-16 89.4 67 55.2
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 7.1e-16 89.4 67 55.2
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 9.2e-16 89.0 67 61.2
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.2e-15 88.6 71 62.0
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.6e-15 88.2 71 62.0
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 6.0e-15 86.3 74 62.2
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 6.0e-15 86.3 74 62.2
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 6.0e-15 86.3 71 57.7
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 6.0e-15 86.3 71 56.3
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 7.8e-15 85.9 71 57.7
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 7.8e-15 85.9 74 62.2
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 7.8e-15 85.9 74 63.5
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 7.8e-15 85.9 74 63.5
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 7.8e-15 85.9 66 51.5
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.0e-14 85.5 68 61.8
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 1.0e-14 85.5 66 62.1
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 1.7e-14 84.7 69 62.3
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.3e-14 84.3 71 54.9
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 3.9e-14 83.6 68 60.3
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 6.6e-14 82.8 61 57.4
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 6.6e-14 82.8 61 57.4
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 6.6e-14 82.8 68 58.8
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 6.6e-14 82.8 67 56.7
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 8.6e-14 82.4 68 58.8
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 8.6e-14 82.4 70 50.0
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 1.1e-13 82.0 66 59.1
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 1.5e-13 81.6 53 73.6
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 2.5e-13 80.9 66 60.6
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 3.3e-13 80.5 71 54.9
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 4.3e-13 80.1 64 59.4
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 7.3e-13 79.3 71 57.7
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 2.1e-12 77.8 61 52.5
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 2.1e-12 77.8 66 56.1
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 4.7e-12 76.6 71 56.3
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 6.2e-12 76.3 54 61.1
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 6.2e-12 76.3 54 61.1
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 8.1e-12 75.9 46 80.4
Psat5g177920 Pisum sativum HOM05D005674 ORTHO05D007015 8.1e-12 75.9 55 65.5
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 1.4e-11 75.1 56 62.5
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 1.4e-11 75.1 71 54.9
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 1.8e-11 74.7 63 55.6
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 1.8e-11 74.7 52 65.4
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 2.4e-11 74.3 48 68.8
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 3.1e-11 73.9 50 74.0
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 4.0e-11 73.6 56 64.3
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 8.9e-11 72.4 48 72.9
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 8.9e-11 72.4 52 71.2
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 1.5e-10 71.6 47 68.1
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 4.4e-10 70.1 48 70.8
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 5.8e-10 69.7 48 68.8
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 7.6e-10 69.3 50 64.0
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 7.6e-10 69.3 51 68.6
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 9.9e-10 68.9 49 69.4
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 9.9e-10 68.9 48 68.8
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 1.3e-09 68.6 45 75.6
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 1.3e-09 68.6 45 75.6
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 2.2e-09 67.8 48 64.6
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 2.2e-09 67.8 49 65.3
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 2.2e-09 67.8 43 76.7
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 2.2e-09 67.8 44 75.0
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 2.9e-09 67.4 48 68.8
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 3.8e-09 67.0 49 65.3
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 6.4e-09 66.2 50 62.0
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 8.4e-09 65.9 46 67.4
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 8.4e-09 65.9 49 65.3
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 1.1e-08 65.5 49 61.2
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 1.1e-08 65.5 49 61.2
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 1.1e-08 65.5 49 61.2
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 1.1e-08 65.5 49 61.2
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 1.1e-08 65.5 49 61.2
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 1.1e-08 65.5 46 67.4
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 1.1e-08 65.5 48 62.5
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 1.4e-08 65.1 48 66.7
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.4e-08 65.1 49 63.3
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 1.4e-08 65.1 47 66.0
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 1.9e-08 64.7 46 67.4
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 1.9e-08 64.7 47 68.1
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 2.4e-08 64.3 45 60.0
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 2.4e-08 64.3 48 66.7
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 5.4e-08 63.2 46 63.0
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 5.4e-08 63.2 46 65.2
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 5.4e-08 63.2 50 64.0
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 9.2e-08 62.4 49 65.3
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 9.2e-08 62.4 48 58.3
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 2.7e-07 60.8 48 54.2
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 3.5e-07 60.5 47 59.6
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 3.5e-07 60.5 49 59.2
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 3.5e-07 60.5 43 67.4
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 6.0e-07 59.7 45 62.2
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 7.8e-07 59.3 45 55.6
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 7.8e-07 59.3 46 58.7
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 1.7e-06 58.2 47 57.4
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 6.6e-06 56.2 37 64.9
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 6.6e-06 56.2 40 55.0


User provided reference genes

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