Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00985 Eucalyptus grandis HOM05D003422 ORTHO05D004263 8.7e-97 357.1 193 100.0
Eucgr.B00992 Eucalyptus grandis HOM05D003422 ORTHO05D004263 1.0e-92 343.6 192 97.4
Eucgr.K01009 Eucalyptus grandis HOM05D003422 ORTHO05D004263 2.3e-89 332.4 192 94.3
Nn8g39875 Nelumbo nucifera HOM05D003422 ORTHO05D004263 2.5e-88 328.9 192 88.0
Hma1.2p1_3343F.1_g335440 Hydrangea macrophylla HOM05D003422 ORTHO05D004263 7.4e-88 327.4 191 85.9
Dinv15231 Davidia involucrata HOM05D003422 ORTHO05D004263 1.3e-87 326.6 192 86.5
CSS0036067 Camellia sinensis var. sinensis HOM05D003422 ORTHO05D004263 3.7e-87 325.1 192 83.9
TWI39G0719 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 6.2e-87 324.3 192 90.1
CiPaw.05G181800 Carya illinoinensis HOM05D003422 ORTHO05D004263 1.4e-86 323.2 192 90.6
TAR622G0502 Trochodendron aralioides HOM05D003422 ORTHO05D004263 2.4e-86 322.4 192 83.9
GSVIVG01007655001 Vitis vinifera HOM05D003422 ORTHO05D004263 2.4e-86 322.4 192 85.9
GSVIVG01021879001 Vitis vinifera HOM05D003422 ORTHO05D004263 2.4e-86 322.4 192 85.9
CANSAT64G0467 Cannabis sativa HOM05D003422 ORTHO05D004263 3.1e-86 322.0 190 88.4
Nn8g40815 Nelumbo nucifera HOM05D003422 ORTHO05D004263 3.1e-86 322.0 194 88.7
QL03p058012 Quercus lobata HOM05D003422 ORTHO05D004263 3.1e-86 322.0 192 90.1
Cc11_g15770 Coffea canephora HOM05D003422 ORTHO05D004263 5.3e-86 321.2 192 82.8
Dinv38208 Davidia involucrata HOM05D003422 ORTHO05D004263 9.0e-86 320.5 192 85.9
Nn2g13933 Nelumbo nucifera HOM05D003422 ORTHO05D004263 9.0e-86 320.5 195 88.2
CiPaw.05G159400 Carya illinoinensis HOM05D003422 ORTHO05D004263 2.0e-85 319.3 192 89.1
QL03p061510 Quercus lobata HOM05D003422 ORTHO05D004263 2.6e-85 318.9 192 90.1
Sed0026406 Sechium edule HOM05D003422 ORTHO05D004263 7.6e-85 317.4 192 83.3
Sed0010066 Sechium edule HOM05D003422 ORTHO05D004263 1.3e-84 316.6 192 82.8
Actinidia15098 Actinidia chinensis HOM05D003422 ORTHO05D004263 3.8e-84 315.1 181 86.2
ClCG07G015410 Citrullus lanatus HOM05D003422 ORTHO05D004263 1.1e-83 313.5 189 83.1
MELO3C017744.2 Cucumis melo HOM05D003422 ORTHO05D004263 1.4e-83 313.2 189 82.5
Peaxi162Scf00128g00219 Petunia axillaris HOM05D003422 ORTHO05D004263 1.9e-83 312.8 192 81.2
CsaV3_4G003000 Cucumis sativus L. HOM05D003422 ORTHO05D004263 3.2e-83 312.0 189 82.0
TWI23G0208 Tripterygium wilfordii HOM05D003422 ORTHO05D004263 7.1e-83 310.8 192 88.0
Oeu041425.1 Olea europaea HOM05D003422 ORTHO05D004263 6.1e-82 307.8 193 83.9
arahy.Tifrunner.gnm1.ann1.G4VR7T Arachis hypogaea HOM05D003422 ORTHO05D004263 7.9e-82 307.4 194 79.9
Nitab4.5_0009109g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 1.0e-81 307.0 192 79.7
PGR102G0689 Punica granatum HOM05D003422 ORTHO05D004263 1.3e-81 306.6 190 80.0
PGSC0003DMG400032131 Solanum tuberosum HOM05D003422 ORTHO05D004263 1.8e-81 306.2 192 79.2
Atru.chr3.1581 Acer truncatum HOM05D003422 ORTHO05D004263 2.3e-81 305.8 192 78.6
Aqoxy5G03760 Aquilegia oxysepala HOM05D003422 ORTHO05D004263 2.3e-81 305.8 190 78.9
Prupe.1G244800 Prunus persica HOM05D003422 ORTHO05D004263 2.3e-81 305.8 195 83.1
Sopen01g001810 Solanum pennellii HOM05D003422 ORTHO05D004263 3.0e-81 305.4 192 79.7
Cfa009213 Carpinus fangiana HOM05D003422 ORTHO05D004263 5.1e-81 304.7 192 86.5
Cfa012129 Carpinus fangiana HOM05D003422 ORTHO05D004263 5.1e-81 304.7 192 86.5
Ciclev10032237m.g Citrus clementina HOM05D003422 ORTHO05D004263 5.1e-81 304.7 194 82.0
Haze_08919 Corylus avellana HOM05D003422 ORTHO05D004263 5.1e-81 304.7 192 86.5
Haze_12250 Corylus avellana HOM05D003422 ORTHO05D004263 5.1e-81 304.7 192 86.5
Prupe.8G016700 Prunus persica HOM05D003422 ORTHO05D004263 5.1e-81 304.7 194 83.0
Nitab4.5_0001565g0060 Nicotiana tabacum HOM05D003422 ORTHO05D004263 6.7e-81 304.3 192 79.2
Solyc01g005810.3 Solanum lycopersicum HOM05D003422 ORTHO05D004263 6.7e-81 304.3 192 79.2
arahy.Tifrunner.gnm1.ann1.I3QT17 Arachis hypogaea HOM05D003422 ORTHO05D004263 8.7e-81 303.9 191 79.6
Phvul.011G000100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 1.1e-80 303.5 194 84.0
CAN.G158.25 Capsicum annuum HOM05D003422 ORTHO05D004263 1.5e-80 303.1 184 80.4
Manes.13G024200 Manihot esculenta HOM05D003422 ORTHO05D004263 1.5e-80 303.1 191 79.6
Cpa.g.sc33.23 Carica papaya HOM05D003422 ORTHO05D004263 1.9e-80 302.8 191 81.7
MD03G1198200 Malus domestica HOM05D003422 ORTHO05D004263 1.9e-80 302.8 179 83.8
Phvul.010G035100 Phaseolus vulgaris HOM05D003422 ORTHO05D004263 5.7e-80 301.2 194 84.0
Sc14g0008740 Simmondsia chinensis HOM05D003422 ORTHO05D004263 5.7e-80 301.2 192 79.2
Atru.chr2.1587 Acer truncatum HOM05D003422 ORTHO05D004263 7.4e-80 300.8 193 78.8
RcHm_v2.0_Chr4g0433011 Rosa chinensis HOM05D003422 ORTHO05D004263 7.4e-80 300.8 196 78.6
Glyma.12G119800 Glycine max HOM05D003422 ORTHO05D004263 1.3e-79 300.1 193 84.5
TAR374G1409 Trochodendron aralioides HOM05D003422 ORTHO05D004263 1.3e-79 300.1 195 80.5
MD11G1214400 Malus domestica HOM05D003422 ORTHO05D004263 2.8e-79 298.9 179 82.7
Nitab4.5_0016963g0010 Nicotiana tabacum HOM05D003422 ORTHO05D004263 2.8e-79 298.9 192 78.1
HPP92_014432 Vanilla planifolia HOM05D003422 ORTHO05D004263 3.7e-79 298.5 192 81.2
Glyma.06G286100 Glycine max HOM05D003422 ORTHO05D004263 1.1e-78 297.0 194 83.0
FAN07G0682 Fragaria x ananassa HOM05D003422 ORTHO05D004263 2.4e-78 295.8 191 82.2
FAN22G1899 Fragaria x ananassa HOM05D003422 ORTHO05D004263 5.3e-78 294.7 189 82.5
VMungo1127G0899 Vigna mungo HOM05D003422 ORTHO05D004263 1.5e-77 293.1 192 76.6
Lalb_Chr10g0099861 Lupinus albus HOM05D003422 ORTHO05D004263 4.5e-77 291.6 191 83.2
RcHm_v2.0_Chr7g0190541 Rosa chinensis HOM05D003422 ORTHO05D004263 1.0e-76 290.4 184 77.7
BcaC08g45809 Brassica carinata HOM05D003422 ORTHO05D004263 2.9e-76 288.9 191 75.9
A07p31020 Brassica napus HOM05D003422 ORTHO05D004263 2.9e-76 288.9 191 75.9
C06p36020 Brassica napus HOM05D003422 ORTHO05D004263 2.9e-76 288.9 191 75.9
BolC6t38723H Brassica oleracea HOM05D003422 ORTHO05D004263 2.9e-76 288.9 191 75.9
THA.LOC104822989 Tarenaya hassleriana HOM05D003422 ORTHO05D004263 2.9e-76 288.9 192 80.7
arahy.Tifrunner.gnm1.ann1.FFB06F Arachis hypogaea HOM05D003422 ORTHO05D004263 3.8e-76 288.5 185 80.0
Hund06028 Selenicereus undatus HOM05D003422 ORTHO05D004263 3.8e-76 288.5 191 76.4
Lalb_Chr04g0254851 Lupinus albus HOM05D003422 ORTHO05D004263 5.0e-76 288.1 191 82.7
FAN17G2514 Fragaria x ananassa HOM05D003422 ORTHO05D004263 6.5e-76 287.7 179 85.5
Sp5g25830 Schrenkiella parvula HOM05D003422 ORTHO05D004263 6.5e-76 287.7 192 76.6
BcaB03g15550 Brassica carinata HOM05D003422 ORTHO05D004263 8.5e-76 287.3 191 75.4
BcaB05g24600 Brassica carinata HOM05D003422 ORTHO05D004263 8.5e-76 287.3 191 75.4
Aa31LG7G7310 Aethionema arabicum HOM05D003422 ORTHO05D004263 1.4e-75 286.6 181 77.9
FvH4_4g25580 Fragaria vesca HOM05D003422 ORTHO05D004263 2.5e-75 285.8 179 85.5
Atru.chr3.1559 Acer truncatum HOM05D003422 ORTHO05D004263 4.2e-75 285.0 183 77.6
FAN06G1621 Fragaria x ananassa HOM05D003422 ORTHO05D004263 7.2e-75 284.3 190 75.3
SEGI_07600 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 7.2e-75 284.3 191 72.8
BcaC03g15214 Brassica carinata HOM05D003422 ORTHO05D004263 1.6e-74 283.1 191 75.4
A02p16750 Brassica napus HOM05D003422 ORTHO05D004263 1.6e-74 283.1 191 74.9
C02p28010 Brassica napus HOM05D003422 ORTHO05D004263 1.6e-74 283.1 191 75.4
BolC2t08844H Brassica oleracea HOM05D003422 ORTHO05D004263 1.6e-74 283.1 191 75.4
Os07g0270900 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 2.7e-74 282.3 191 72.3
BraA02t06729Z Brassica rapa HOM05D003422 ORTHO05D004263 6.1e-74 281.2 191 73.3
Lsat_1_v5_gn_8_152261 Lactuca sativa HOM05D003422 ORTHO05D004263 7.9e-74 280.8 180 78.9
HanXRQChr06g0172831 Helianthus annuus HOM05D003422 ORTHO05D004263 1.4e-73 280.0 201 73.1
Migut.E00204 Erythranthe guttata HOM05D003422 ORTHO05D004263 1.8e-73 279.6 191 74.3
Psat7g167080 Pisum sativum HOM05D003422 ORTHO05D004263 1.8e-73 279.6 193 77.2
Rhsim02G0001300 Rhododendron simsii HOM05D003422 ORTHO05D004263 5.1e-73 278.1 228 65.4
unitig_21.g20608 Utricularia gibba HOM05D003422 ORTHO05D004263 8.8e-73 277.3 191 78.5
CARHR023720 Cardamine hirsuta HOM05D003422 ORTHO05D004263 2.5e-72 275.8 178 75.3
Ca_20120_v3 Cicer arietinum L. HOM05D003422 ORTHO05D004263 2.5e-72 275.8 193 77.7
DCAR_026512 Daucus carota HOM05D003422 ORTHO05D004263 3.3e-72 275.4 195 71.8
Thhalv10008312m.g Eutrema salsugineum HOM05D003422 ORTHO05D004263 4.3e-72 275.0 179 76.0
Potri.012G085300 Populus trichocarpa HOM05D003422 ORTHO05D004263 9.7e-72 273.9 191 78.5
ATR0824G091 Amborella trichopoda HOM05D003422 ORTHO05D004263 1.3e-71 273.5 191 72.3
Zm00001eb364260 Zea mays HOM05D003422 ORTHO05D004263 1.1e-70 270.4 192 68.2
PSO478G1628 Papaver somniferum HOM05D003422 ORTHO05D004263 1.8e-70 269.6 181 72.9
PSO017G5618 Papaver somniferum HOM05D003422 ORTHO05D004263 3.1e-70 268.9 181 71.8
Lsat_1_v5_gn_5_166341 Lactuca sativa HOM05D003422 ORTHO05D004263 4.1e-70 268.5 180 76.1
PSO017G4826 Papaver somniferum HOM05D003422 ORTHO05D004263 5.3e-70 268.1 181 72.9
TPR.G28314 Trifolium pratense HOM05D003422 ORTHO05D004263 5.3e-70 268.1 193 69.9
Sabra15G0107000 Salix brachista HOM05D003422 ORTHO05D004263 2.0e-69 266.2 191 76.4
Carub.0001s2287 Capsella rubella HOM05D003422 ORTHO05D004263 4.5e-69 265.0 193 70.5
AT1G23280 Arabidopsis thaliana HOM05D003422 ORTHO05D004263 5.9e-69 264.6 195 69.7
TPR.G37166 Trifolium pratense HOM05D003422 ORTHO05D004263 5.9e-69 264.6 211 64.9
CDE02G2608 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 7.7e-69 264.2 185 77.3
Potri.015G083700 Populus trichocarpa HOM05D003422 ORTHO05D004263 2.2e-68 262.7 191 75.4
SpUn0343_0020 Schrenkiella parvula HOM05D003422 ORTHO05D004263 2.2e-68 262.7 182 72.5
Mapoly0061s0104 Marchantia polymorpha HOM05D003422 ORTHO05D004263 3.8e-68 261.9 188 68.6
BcaC01g03409 Brassica carinata HOM05D003422 ORTHO05D004263 6.5e-68 261.2 171 77.8
C03p52870 Brassica napus HOM05D003422 ORTHO05D004263 6.5e-68 261.2 171 77.8
Pp3c2_4220 Physcomitrium patens HOM05D003422 ORTHO05D004263 8.5e-68 260.8 188 69.1
Rhsim12G0110100 Rhododendron simsii HOM05D003422 ORTHO05D004263 8.5e-68 260.8 242 60.7
BraA03t13450Z Brassica rapa HOM05D003422 ORTHO05D004263 1.4e-67 260.0 173 76.3
BolC3t17554H Brassica oleracea HOM05D003422 ORTHO05D004263 1.9e-67 259.6 185 73.5
Duzib068G0444 Durio zibethinus HOM05D003422 ORTHO05D004263 5.5e-67 258.1 192 74.0
AL1G31870 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 1.6e-66 256.5 192 67.7
Sabra12G0061400 Salix brachista HOM05D003422 ORTHO05D004263 2.7e-66 255.8 224 67.0
Gohir.A12G199400 Gossypium hirsutum HOM05D003422 ORTHO05D004263 3.6e-66 255.4 192 75.0
Gohir.D12G202200 Gossypium hirsutum HOM05D003422 ORTHO05D004263 3.6e-66 255.4 192 75.0
Gorai.008G217200 Gossypium raimondii HOM05D003422 ORTHO05D004263 3.6e-66 255.4 192 75.0
vmacro17129 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 4.7e-66 255.0 200 68.5
COL.COLO4_05559 Corchorus olitorius HOM05D003422 ORTHO05D004263 6.1e-66 254.6 192 75.0
SGA_v2.0_scaffold63G21735 Striga asiatica HOM05D003637 ORTHO05D004175 1.4e-65 253.4 183 78.1
ECA233G3049 Erigeron canadensis HOM05D003422 ORTHO05D004263 1.8e-65 253.1 132 91.7
Rhsim06G0078600 Rhododendron simsii HOM05D003422 ORTHO05D004263 3.0e-65 252.3 290 51.0
A03p43080 Brassica napus HOM05D003422 ORTHO05D004263 8.8e-65 250.8 197 67.0
Lj1g0018398 Lotus japonicus HOM05D003422 ORTHO05D004263 8.8e-65 250.8 192 75.5
CBR_g32274 Chara braunii HOM05D003422 ORTHO05D004263 2.6e-64 249.2 187 71.1
Thecc.03G025100 Theobroma cacao HOM05D003422 ORTHO05D004263 4.4e-64 248.4 192 73.4
Medtr2g103560 Medicago truncatula HOM05D003422 ORTHO05D004263 1.3e-63 246.9 223 64.6
AL1G37060 Arabidopsis lyrata HOM05D003422 ORTHO05D004263 2.2e-63 246.1 191 66.5
BcaC09g49229 Brassica carinata HOM05D003422 ORTHO05D004263 4.1e-62 241.9 170 72.4
SMO331G0073 Selaginella moellendorffii HOM05D003422 ORTHO05D004263 1.7e-60 236.5 203 62.1
ATR0996G003 Amborella trichopoda HOM05D003422 ORTHO05D004263 1.1e-59 233.8 189 65.1
Actinidia27808 Actinidia chinensis HOM05D003422 ORTHO05D004263 6.1e-58 228.0 194 65.5
vmacro16194 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 3.0e-57 225.7 192 63.0
A01p32170 Brassica napus HOM05D003422 ORTHO05D004263 8.8e-57 224.2 172 69.2
Medtr4g079190 Medicago truncatula HOM05D003422 ORTHO05D004263 2.0e-56 223.0 193 67.4
BraA01t03342Z Brassica rapa HOM05D003422 ORTHO05D004263 6.3e-55 218.0 174 66.1
EL10Ac6g13812 Beta vulgaris HOM05D003422 ORTHO05D004263 2.0e-53 213.0 192 58.9
Cre02.g145231 Chlamydomonas reinhardtii HOM05D003422 ORTHO05D004263 2.6e-53 212.6 190 56.3
Nitab4.5_0000979g0040 Nicotiana tabacum HOM05D003422 ORTHO05D004263 2.6e-53 212.6 143 76.9
AUR62003555 Chenopodium quinoa HOM05D003422 ORTHO05D004263 1.9e-51 206.5 194 55.2
AUR62017869 Chenopodium quinoa HOM05D003422 ORTHO05D004263 3.2e-51 205.7 194 55.2
SEGI_01875 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 2.1e-50 203.0 117 82.9
Prupe.8G011700 Prunus persica HOM05D003422 ORTHO05D004263 1.0e-49 200.7 143 80.4
PRCOL_00004566 Prasinoderma coloniale HOM05D003422 ORTHO05D004263 2.3e-49 199.5 187 52.4
CDE05G1364 Ceratophyllum demersum HOM05D003422 ORTHO05D004263 3.0e-49 199.1 117 78.6
Pp3c1_36430 Physcomitrium patens HOM05D003422 ORTHO05D004263 1.2e-48 197.2 188 54.8
FvH4_7g31100 Fragaria vesca HOM05D003422 ORTHO05D004263 2.6e-48 196.1 179 58.7
Actinidia01349 Actinidia chinensis HOM05D003422 ORTHO05D004263 2.4e-46 189.5 178 64.0
Eucgr.K00976 Eucalyptus grandis HOM05D003422 ORTHO05D004263 4.1e-46 188.7 192 64.1
SGA_v2.0_scaffold87G27078 Striga asiatica HOM05D003637 ORTHO05D004175 8.5e-44 181.0 146 75.3
Cfa026988 Carpinus fangiana HOM05D003422 ORTHO05D004263 2.6e-40 169.5 173 52.0
MCO01G280 Micromonas commoda HOM05D003422 ORTHO05D004263 4.1e-38 162.2 189 52.4
Haze_26253 Corylus avellana HOM05D003422 ORTHO05D004263 3.5e-37 159.1 192 51.6
Lj1A759T42 Lonicera japonica HOM05D003422 ORTHO05D004263 1.1e-35 154.1 106 85.8
AagrBONN_evm.TU.Sc2ySwM_344.1527 Anthoceros agrestis HOM05D003422 ORTHO05D004263 1.3e-31 140.6 147 60.5
Eucgr.B00881 Eucalyptus grandis HOM05D003422 ORTHO05D004263 3.2e-30 136.0 71 95.8
BolC1t04073H Brassica oleracea HOM05D003422 ORTHO05D004263 8.9e-25 117.9 60 88.3
C01p41190 Brassica napus HOM05D003422 ORTHO05D004263 1.5e-24 117.1 60 86.7
Ah.04g165080 Amaranthus hybridus HOM05D002611 ORTHO05D002822 2.6e-24 116.3 106 60.4
BcaB04g17046 Brassica carinata HOM05D003422 ORTHO05D004263 9.8e-24 114.4 73 79.5
BolC4t24676H Brassica oleracea HOM05D003422 ORTHO05D004263 3.7e-23 112.5 114 58.8
Os07g0271600 Oryza sativa ssp. japonica HOM05D003422 ORTHO05D004263 1.6e-21 107.1 69 73.9
BcaB01g03637 Brassica carinata HOM05D003422 ORTHO05D004263 4.6e-21 105.5 78 74.4
BcaB07g33435 Brassica carinata HOM05D003422 ORTHO05D004263 3.3e-19 99.4 78 70.5
FAN10G4221 Fragaria x ananassa HOM05D003422 ORTHO05D004263 6.8e-17 91.7 75 68.0
BcaB01g02833 Brassica carinata HOM05D003422 ORTHO05D004263 6.4e-15 85.1 77 63.6
BcaC02g10230 Brassica carinata HOM05D003422 ORTHO05D004263 1.7e-12 77.0 73 60.3
SEGI_38458 Sequoiadendron giganteum HOM05D003422 ORTHO05D004263 1.7e-12 77.0 69 55.1
Nitab4.5_0000979g0020 Nicotiana tabacum HOM05D003422 ORTHO05D004263 2.3e-12 76.6 70 57.1
FAN06G3710 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.5e-11 73.9 35 85.7
FAN10G4187 Fragaria x ananassa HOM05D003422 ORTHO05D004263 1.4e-09 67.4 57 61.4
Oeu036040.1 Olea europaea HOM05D003422 ORTHO05D004263 7.6e-08 61.6 33 93.9
BcaC09g49085 Brassica carinata HOM05D001456 ORTHO05D015898 1.3e-07 60.8 114 40.4
vmacro17128 Vaccinium macrocarpon HOM05D003422 ORTHO05D004263 2.2e-07 60.1 46 69.6
BcaB04g17978 Brassica carinata HOM05D005786 ORTHO05D006946 2.4e-06 56.6 63 55.6
TWI60G0838 Tripterygium wilfordii HOM05D003422 ORTHO05D413943 4.1e-06 55.8 27 88.9


User provided reference genes

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