Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 1.4e-47 192.6 95 100.0
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 2.3e-26 122.1 96 62.5
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 1.2e-25 119.8 95 61.1
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 4.4e-25 117.9 95 58.9
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 1.8e-23 112.5 95 55.8
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 2.4e-23 112.1 106 54.7
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 3.1e-23 111.7 95 55.8
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 5.3e-23 110.9 98 57.1
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 9.1e-23 110.2 93 57.0
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.2e-22 109.8 96 57.3
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 5.9e-22 107.5 102 54.9
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 7.7e-22 107.1 95 55.8
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.0e-21 106.7 98 54.1
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 2.9e-21 105.1 95 54.7
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 6.5e-21 104.0 95 57.9
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 6.5e-21 104.0 99 51.5
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 1.1e-20 103.2 95 50.5
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 1.1e-20 103.2 96 56.2
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 1.9e-20 102.4 99 50.5
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 1.9e-20 102.4 99 50.5
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 3.2e-20 101.7 96 51.0
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 4.2e-20 101.3 95 52.6
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 5.5e-20 100.9 95 50.5
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 9.4e-20 100.1 95 55.8
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 9.4e-20 100.1 95 55.8
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 1.2e-19 99.8 98 50.0
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.2e-19 99.8 95 52.6
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 2.1e-19 99.0 95 55.8
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 2.7e-19 98.6 87 55.2
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 2.7e-19 98.6 95 51.6
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 3.6e-19 98.2 98 52.0
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 6.1e-19 97.4 93 50.5
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 8.0e-19 97.1 95 53.7
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 8.0e-19 97.1 97 50.5
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 8.0e-19 97.1 97 52.6
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 1.0e-18 96.7 95 54.7
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 1.4e-18 96.3 95 53.7
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 1.4e-18 96.3 93 53.8
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 4.0e-18 94.7 95 53.7
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 6.8e-18 94.0 95 51.6
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 6.8e-18 94.0 96 57.3
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 8.8e-18 93.6 96 50.0
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 1.2e-17 93.2 96 51.0
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 1.2e-17 93.2 95 48.4
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 1.5e-17 92.8 93 49.5
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 1.5e-17 92.8 91 52.7
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 2.6e-17 92.0 95 55.8
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 4.4e-17 91.3 95 50.5
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 4.4e-17 91.3 95 47.4
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 7.5e-17 90.5 100 50.0
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 7.5e-17 90.5 96 49.0
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 1.3e-16 89.7 95 45.3
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 1.3e-16 89.7 95 50.5
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 2.2e-16 89.0 88 51.1
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 2.8e-16 88.6 95 45.3
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 2.8e-16 88.6 95 53.7
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 2.8e-16 88.6 95 53.7
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 8.3e-16 87.0 97 49.5
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 1.4e-15 86.3 94 47.9
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 1.4e-15 86.3 96 51.0
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.4e-15 86.3 95 47.4
SGA_v2.0_scaffold70G23461 Striga asiatica HOM05D004838 ORTHO05D005373 2.4e-15 85.5 93 49.5
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.1e-15 85.1 102 48.0
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 3.1e-15 85.1 96 49.0
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 3.1e-15 85.1 87 52.9
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 5.4e-15 84.3 96 51.0
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 7.0e-15 84.0 95 44.2
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.6e-14 82.8 101 46.5
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 5.9e-14 80.9 99 47.5
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 5.9e-14 80.9 96 46.9
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 5.9e-14 80.9 96 45.8
Sabra13G0119300 Salix brachista HOM05D004838 ORTHO05D005373 1.0e-13 80.1 90 52.2
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 1.7e-13 79.3 99 47.5
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 1.7e-13 79.3 99 47.5
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 2.3e-13 79.0 98 50.0
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 2.9e-13 78.6 99 47.5
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 2.9e-13 78.6 97 42.3
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 2.9e-13 78.6 89 52.8
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.8e-13 78.2 102 46.1
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 6.5e-13 77.4 98 46.9
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 6.5e-13 77.4 96 44.8
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.1e-12 76.6 104 45.2
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.1e-12 76.6 105 43.8
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 1.9e-12 75.9 98 44.9
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 2.5e-12 75.5 98 43.9
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 3.2e-12 75.1 99 43.4
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 3.2e-12 75.1 99 43.4
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 3.2e-12 75.1 99 43.4
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 3.2e-12 75.1 99 43.4
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 3.2e-12 75.1 99 43.4
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 7.2e-12 73.9 103 40.8
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 2.1e-11 72.4 99 43.4
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 2.1e-11 72.4 99 43.4
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 2.8e-11 72.0 98 42.9
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 2.8e-11 72.0 98 42.9
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 3.6e-11 71.6 96 41.7
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 4.7e-11 71.2 95 43.2
Migut.H01016 Erythranthe guttata HOM05D004838 ORTHO05D005373 6.1e-11 70.9 99 43.4
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 1.0e-10 70.1 100 42.0
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 1.0e-10 70.1 100 42.0
Migut.H01015 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.0e-10 70.1 96 41.7
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 1.0e-10 70.1 96 40.6
Actinidia08019 Actinidia chinensis HOM05D004838 ORTHO05D005373 3.0e-10 68.6 96 43.8
ECA246G0551 Erigeron canadensis HOM05D004838 ORTHO05D005373 3.0e-10 68.6 90 41.1
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 4.0e-10 68.2 98 40.8
MBI02_g37332_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 6.8e-10 67.4 98 42.9
MBI18_g27682_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 6.8e-10 67.4 95 37.9
Sc21g0002480 Simmondsia chinensis HOM05D004838 ORTHO05D005373 6.8e-10 67.4 93 46.2
Sc21g0002490 Simmondsia chinensis HOM05D004838 ORTHO05D005373 6.8e-10 67.4 93 47.3
Sc21g0002530 Simmondsia chinensis HOM05D004838 ORTHO05D005373 1.5e-09 66.2 93 47.3
MBI02_g37326_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 2.0e-09 65.9 98 40.8
A03p57930 Brassica napus HOM05D004838 ORTHO05D005373 2.6e-09 65.5 95 38.9
CDE10G0022 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 3.4e-09 65.1 90 36.7
Thecc.06G200800 Theobroma cacao HOM05D004838 ORTHO05D005373 3.4e-09 65.1 95 41.1
MBI02_g37331_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 4.4e-09 64.7 98 41.8
BraA03t14857Z Brassica rapa HOM05D004838 ORTHO05D005373 5.7e-09 64.3 97 38.1
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 5.7e-09 64.3 95 38.9
MBI02_g37327_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 7.5e-09 63.9 98 40.8
MBI02_g37329_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 7.5e-09 63.9 98 41.8
Thecc.02G170800 Theobroma cacao HOM05D000831 ORTHO05D000660 7.5e-09 63.9 96 39.6
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 9.8e-09 63.5 96 41.7
Haze_06585 Corylus avellana HOM05D004838 ORTHO05D005373 1.7e-08 62.8 99 39.4
ECA246G0483 Erigeron canadensis HOM05D004838 ORTHO05D005373 1.7e-08 62.8 91 40.7
Sc21g0002500 Simmondsia chinensis HOM05D004838 ORTHO05D005373 2.2e-08 62.4 94 45.7
Lsat_1_v5_gn_3_40361 Lactuca sativa HOM05D004838 ORTHO05D005373 3.7e-08 61.6 95 40.0
MBI02_g37334_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 3.7e-08 61.6 98 40.8
MBI02_g44823_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 3.7e-08 61.6 98 40.8
QL05p081093 Quercus lobata HOM05D004838 ORTHO05D005373 3.7e-08 61.6 94 36.2
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 3.7e-08 61.6 95 41.1
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 4.9e-08 61.2 93 37.6
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 4.9e-08 61.2 96 40.6
Lalb_Chr22g0356341 Lupinus albus HOM05D004838 ORTHO05D005373 1.1e-07 60.1 95 36.8
Sc21g0002510 Simmondsia chinensis HOM05D004838 ORTHO05D005373 1.1e-07 60.1 92 41.3
MBI02_g37328_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 1.8e-07 59.3 98 39.8
MBI02_g37330_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 1.8e-07 59.3 98 38.8
ClCG02G017310 Citrullus lanatus HOM05D031423 ORTHO05D005373 3.1e-07 58.5 89 39.3
Gohir.D05G169000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 3.1e-07 58.5 95 36.8
Hma1.2p1_0565F.1_g179640 Hydrangea macrophylla HOM05D000831 ORTHO05D000660 3.1e-07 58.5 98 39.8
Nitab4.5_0005244g0070 Nicotiana tabacum HOM05D004838 ORTHO05D005373 4.1e-07 58.2 85 40.0
Sed0022545 Sechium edule HOM05D004838 ORTHO05D005373 4.1e-07 58.2 98 40.8
Duzib132G0142 Durio zibethinus HOM05D000831 ORTHO05D000660 5.4e-07 57.8 98 39.8
PGR142G0205 Punica granatum HOM05D000831 ORTHO05D000660 5.4e-07 57.8 97 40.2
CSS0048593 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 7.0e-07 57.4 98 39.8
Dinv15499 Davidia involucrata HOM05D000831 ORTHO05D000660 7.0e-07 57.4 97 37.1
ECA246G2857 Erigeron canadensis HOM05D004838 ORTHO05D005373 7.0e-07 57.4 98 39.8
unitig_699.g19386 Utricularia gibba HOM05D004838 ORTHO05D005373 7.0e-07 57.4 96 37.5
CDE02G2086 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 9.2e-07 57.0 107 35.5
ECA246G1879 Erigeron canadensis HOM05D000214 ORTHO05D000131 9.2e-07 57.0 87 43.7
MBI02_g37333_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 1.2e-06 56.6 98 38.8
TWI36G1218 Tripterygium wilfordii HOM05D000831 ORTHO05D000660 1.2e-06 56.6 97 39.2
TAR627G0102 Trochodendron aralioides HOM05D004838 ORTHO05D005373 1.2e-06 56.6 60 40.0
CSS0037125 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 1.6e-06 56.2 98 39.8
TAR627G0747 Trochodendron aralioides HOM05D000831 ORTHO05D000660 1.6e-06 56.2 97 36.1
Gorai.009G174200 Gossypium raimondii HOM05D004838 ORTHO05D005373 2.0e-06 55.8 95 35.8
MBI18_g27689_MAGBIO Magnolia biondii HOM05D000831 ORTHO05D000660 2.0e-06 55.8 101 37.6
Nn1g07823 Nelumbo nucifera HOM05D000831 ORTHO05D000660 2.0e-06 55.8 97 37.1
Rhsim04G0062800 Rhododendron simsii HOM05D000831 ORTHO05D000660 2.0e-06 55.8 98 38.8
Rhsim06G0152500 Rhododendron simsii HOM05D000831 ORTHO05D000660 2.7e-06 55.5 98 39.8
TWI36G0282 Tripterygium wilfordii HOM05D000831 ORTHO05D000660 2.7e-06 55.5 97 39.2
CSS0015806 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 3.5e-06 55.1 98 38.8
Lsat_1_v5_gn_3_40020 Lactuca sativa HOM05D004838 ORTHO05D005373 3.5e-06 55.1 79 38.0
Nn1g00002 Nelumbo nucifera HOM05D000831 ORTHO05D000660 3.5e-06 55.1 97 37.1
Nn1g07821 Nelumbo nucifera HOM05D000831 ORTHO05D000660 3.5e-06 55.1 97 37.1
Nn1g07824 Nelumbo nucifera HOM05D000831 ORTHO05D000660 3.5e-06 55.1 97 37.1
CSS0022903 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 4.5e-06 54.7 98 38.8
CSS0040678 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 4.5e-06 54.7 98 38.8
CSS0047300 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 4.5e-06 54.7 98 38.8
CSS0049002 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 4.5e-06 54.7 98 38.8
MELO3C013538.2 Cucumis melo HOM05D031423 ORTHO05D034979 4.5e-06 54.7 102 38.2
Duzib213G0527 Durio zibethinus HOM05D000831 ORTHO05D000660 4.5e-06 54.7 99 37.4
Migut.H01018 Erythranthe guttata HOM05D004838 ORTHO05D005373 4.5e-06 54.7 90 38.9
Solyc12g005600.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 4.5e-06 54.7 92 35.9
Duzib213G0034 Durio zibethinus HOM05D000831 ORTHO05D000660 5.9e-06 54.3 99 37.4
Nn1g07825 Nelumbo nucifera HOM05D000831 ORTHO05D000660 5.9e-06 54.3 97 37.1
Nn1g07832 Nelumbo nucifera HOM05D000831 ORTHO05D000660 5.9e-06 54.3 97 37.1
Sc06g0009320 Simmondsia chinensis HOM05D004838 ORTHO05D005373 5.9e-06 54.3 87 43.7
Sc21g0002520 Simmondsia chinensis HOM05D004838 ORTHO05D005373 5.9e-06 54.3 92 39.1
TAR627G0348 Trochodendron aralioides HOM05D000831 ORTHO05D000660 5.9e-06 54.3 97 36.1
Gohir.A05G166000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 7.8e-06 53.9 95 34.7
TAR629G3265 Trochodendron aralioides HOM05D000831 ORTHO05D000660 7.8e-06 53.9 98 39.8


User provided reference genes

Program Settings