Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00764 Eucalyptus grandis HOM05D000456 ORTHO05D190936 9.7e-49 196.4 95 100.0
Eucgr.K00543 Eucalyptus grandis HOM05D000456 ORTHO05D000887 3.0e-18 95.1 47 93.6
Eucgr.K00540 Eucalyptus grandis HOM05D000456 ORTHO05D000887 1.1e-15 86.7 47 89.4
PGR142G3706 Punica granatum HOM05D000456 ORTHO05D000887 2.9e-13 78.6 47 68.1
Manes.05G006200 Manihot esculenta HOM05D000456 ORTHO05D000887 7.2e-12 73.9 47 68.1
TAR636G2679 Trochodendron aralioides HOM05D000456 ORTHO05D000887 1.6e-11 72.8 47 68.1
Potri.014G109700 Populus trichocarpa HOM05D000456 ORTHO05D000887 8.0e-11 70.5 47 61.7
Nn3g18612 Nelumbo nucifera HOM05D000456 ORTHO05D000887 1.4e-10 69.7 47 63.8
ATR0796G027 Amborella trichopoda HOM05D000456 ORTHO05D000887 2.3e-10 68.9 47 63.8
HPP92_001960 Vanilla planifolia HOM05D000456 ORTHO05D000887 3.0e-10 68.6 47 63.8
MBI18_g38877_MAGBIO Magnolia biondii HOM05D000456 ORTHO05D000887 4.0e-10 68.2 47 63.8
Sabra14G0081000 Salix brachista HOM05D000456 ORTHO05D000887 4.0e-10 68.2 47 59.6
Duzib138G1236 Durio zibethinus HOM05D000456 ORTHO05D000887 6.8e-10 67.4 47 63.8
Nn4g25093 Nelumbo nucifera HOM05D000456 ORTHO05D000887 6.8e-10 67.4 47 66.0
Thecc.01G328800 Theobroma cacao HOM05D000456 ORTHO05D000887 1.2e-09 66.6 47 61.7
Eucgr.L00860 Eucalyptus grandis HOM05D000456 ORTHO05D000887 1.5e-09 66.2 46 65.2
Potri.002G184100 Populus trichocarpa HOM05D000456 ORTHO05D000887 2.0e-09 65.9 47 61.7
Eucgr.C01910 Eucalyptus grandis HOM05D000456 ORTHO05D000887 2.6e-09 65.5 46 63.0
Eucgr.L03124 Eucalyptus grandis HOM05D000456 ORTHO05D000887 2.6e-09 65.5 46 63.0
Atru.chr5.819 Acer truncatum HOM05D000456 ORTHO05D000887 3.4e-09 65.1 45 64.4
Gohir.D11G107700 Gossypium hirsutum HOM05D000456 ORTHO05D000887 3.4e-09 65.1 47 59.6
Gorai.007G115400 Gossypium raimondii HOM05D000456 ORTHO05D000887 3.4e-09 65.1 47 59.6
TWI23G0730 Tripterygium wilfordii HOM05D000456 ORTHO05D000887 5.7e-09 64.3 48 60.4
Eucgr.C01931 Eucalyptus grandis HOM05D000456 ORTHO05D000887 7.5e-09 63.9 47 61.7
Cpa.g.sc57.56 Carica papaya HOM05D000456 ORTHO05D000887 9.8e-09 63.5 47 57.4
Gohir.A11G103200 Gossypium hirsutum HOM05D000456 ORTHO05D000887 9.8e-09 63.5 47 57.4
TWI59G1301 Tripterygium wilfordii HOM05D000456 ORTHO05D000887 1.3e-08 63.2 47 61.7
Ciclev10022186m.g Citrus clementina HOM05D000456 ORTHO05D000887 1.7e-08 62.8 47 59.6
PGR102G2489 Punica granatum HOM05D000456 ORTHO05D000887 1.4e-07 59.7 47 59.6
Cfa004360 Carpinus fangiana HOM05D000456 ORTHO05D000887 1.8e-07 59.3 47 59.6
Ciclev10026092m.g Citrus clementina HOM05D000456 ORTHO05D000887 1.8e-07 59.3 47 59.6
Haze_09328 Corylus avellana HOM05D000456 ORTHO05D000887 2.4e-07 58.9 48 54.2
Lj2A537T51 Lonicera japonica HOM05D000456 ORTHO05D000887 2.4e-07 58.9 48 58.3
Lalb_Chr23g0270271 Lupinus albus HOM05D000456 ORTHO05D000887 2.4e-07 58.9 47 59.6
Eucgr.K00544 Eucalyptus grandis HOM05D000456 ORTHO05D000887 3.1e-07 58.5 31 90.3
THA.LOC104824905 Tarenaya hassleriana HOM05D000456 ORTHO05D000887 3.1e-07 58.5 47 55.3
A04p16980 Brassica napus HOM05D000456 ORTHO05D000887 4.1e-07 58.2 48 58.3
BolC4t26748H Brassica oleracea HOM05D000456 ORTHO05D000887 4.1e-07 58.2 48 58.3
BraA04t17328Z Brassica rapa HOM05D000456 ORTHO05D000887 4.1e-07 58.2 48 58.3
Phvul.011G162600 Phaseolus vulgaris HOM05D000456 ORTHO05D000887 4.1e-07 58.2 48 62.5
THA.LOC104812608 Tarenaya hassleriana HOM05D000456 ORTHO05D000887 4.1e-07 58.2 47 55.3
Cpa.g.sc55.55 Carica papaya HOM05D000456 ORTHO05D000887 5.4e-07 57.8 47 57.4
CiPaw.02G021900 Carya illinoinensis HOM05D000456 ORTHO05D000887 5.4e-07 57.8 47 57.4
HanXRQChr17g0540481 Helianthus annuus HOM05D000456 ORTHO05D000887 5.4e-07 57.8 47 53.2
Lj1g0013032 Lotus japonicus HOM05D000456 ORTHO05D000887 5.4e-07 57.8 47 53.2
THA.LOC104807675 Tarenaya hassleriana HOM05D000456 ORTHO05D000887 5.4e-07 57.8 47 57.4
Atru.chr3.1306 Acer truncatum HOM05D000456 ORTHO05D000887 7.0e-07 57.4 47 57.4
Glyma.19G100000 Glycine max HOM05D000456 ORTHO05D000887 7.0e-07 57.4 47 51.1
Lalb_Chr16g0381821 Lupinus albus HOM05D000456 ORTHO05D000887 7.0e-07 57.4 47 57.4
arahy.Tifrunner.gnm1.ann1.F60HC3 Arachis hypogaea HOM05D000456 ORTHO05D000887 9.2e-07 57.0 47 55.3
arahy.Tifrunner.gnm1.ann1.T2XUYC Arachis hypogaea HOM05D000456 ORTHO05D000887 9.2e-07 57.0 47 55.3
MSTRG.3748 Avicennia marina HOM05D000456 ORTHO05D000887 9.2e-07 57.0 47 53.2
BcaC02g08688 Brassica carinata HOM05D000456 ORTHO05D000887 9.2e-07 57.0 48 56.2
C04p51680 Brassica napus HOM05D000456 ORTHO05D000887 9.2e-07 57.0 48 56.2
Glyma.06G229400 Glycine max HOM05D000456 ORTHO05D000887 9.2e-07 57.0 48 64.6
TPR.G13947 Trifolium pratense HOM05D000456 ORTHO05D000887 9.2e-07 57.0 47 59.6
AL7G12460 Arabidopsis lyrata HOM05D000456 ORTHO05D000887 1.2e-06 56.6 47 57.4
Carub.0007s0209 Capsella rubella HOM05D000456 ORTHO05D000887 1.2e-06 56.6 47 57.4
Psat5g045440 Pisum sativum HOM05D000456 ORTHO05D000887 1.2e-06 56.6 48 54.2
Sed0020203 Sechium edule HOM05D000456 ORTHO05D000887 1.2e-06 56.6 47 55.3
TAR628G0183 Trochodendron aralioides HOM05D000456 ORTHO05D000887 1.2e-06 56.6 47 55.3
vmacro22334 Vaccinium macrocarpon HOM05D000456 ORTHO05D000887 1.2e-06 56.6 48 54.2
MELO3C007728.2 Cucumis melo HOM05D000456 ORTHO05D000887 1.6e-06 56.2 47 55.3
CsaV3_6G045150 Cucumis sativus L. HOM05D000456 ORTHO05D000887 1.6e-06 56.2 47 55.3
Dinv44832 Davidia involucrata HOM05D000456 ORTHO05D000887 1.6e-06 56.2 47 55.3
Glyma.16G050700 Glycine max HOM05D000456 ORTHO05D000887 1.6e-06 56.2 47 51.1
Sp1g24390 Schrenkiella parvula HOM05D000456 ORTHO05D000887 1.6e-06 56.2 47 57.4
TWI53G0958 Tripterygium wilfordii HOM05D000456 ORTHO05D000887 1.6e-06 56.2 47 55.3
AL1G41740 Arabidopsis lyrata HOM05D000456 ORTHO05D000887 2.0e-06 55.8 47 57.4
CARHR113670 Cardamine hirsuta HOM05D000456 ORTHO05D000887 2.0e-06 55.8 47 55.3
ClCG01G018500 Citrullus lanatus HOM05D000456 ORTHO05D000887 2.0e-06 55.8 47 55.3
ECA247G2470 Erigeron canadensis HOM05D000456 ORTHO05D000887 2.0e-06 55.8 77 41.6
Thhalv10008557m.g Eutrema salsugineum HOM05D000456 ORTHO05D000887 2.0e-06 55.8 47 57.4
FvH4_1g20050 Fragaria vesca HOM05D000456 ORTHO05D000887 2.0e-06 55.8 47 55.3
FAN28G1535 Fragaria x ananassa HOM05D000456 ORTHO05D000887 2.0e-06 55.8 47 55.3
Lalb_Chr08g0242331 Lupinus albus HOM05D000456 ORTHO05D000887 2.0e-06 55.8 47 55.3
MD15G1316400 Malus domestica HOM05D000456 ORTHO05D000887 2.0e-06 55.8 47 55.3
Medtr3g100750 Medicago truncatula HOM05D000456 ORTHO05D000887 2.0e-06 55.8 47 55.3
RcHm_v2.0_Chr2g0112041 Rosa chinensis HOM05D000456 ORTHO05D000887 2.0e-06 55.8 47 55.3
Thecc.01G093100 Theobroma cacao HOM05D000456 ORTHO05D000887 2.0e-06 55.8 48 54.2
VMungo1127G0806 Vigna mungo HOM05D000456 ORTHO05D000887 2.0e-06 55.8 48 60.4
MSTRG.15702 Avicennia marina HOM05D000456 ORTHO05D000887 2.7e-06 55.5 47 55.3
BcaB08g35072 Brassica carinata HOM05D000456 ORTHO05D000887 2.7e-06 55.5 47 55.3
BcaC07g41066 Brassica carinata HOM05D000456 ORTHO05D000887 2.7e-06 55.5 47 55.3
A09p57540 Brassica napus HOM05D000456 ORTHO05D000887 2.7e-06 55.5 47 55.3
C08p40660 Brassica napus HOM05D000456 ORTHO05D000887 2.7e-06 55.5 47 55.3
BolC8t51632H Brassica oleracea HOM05D000456 ORTHO05D000887 2.7e-06 55.5 47 55.3
BraA09t41145Z Brassica rapa HOM05D000456 ORTHO05D000887 2.7e-06 55.5 47 55.3
Thhalv10000257m.g Eutrema salsugineum HOM05D000456 ORTHO05D000887 2.7e-06 55.5 47 55.3
FAN23G0244 Fragaria x ananassa HOM05D000456 ORTHO05D000887 2.7e-06 55.5 47 53.2
Hma1.2p1_0010F.1_g007040 Hydrangea macrophylla HOM05D000456 ORTHO05D000887 2.7e-06 55.5 47 55.3
Lalb_Chr09g0326051 Lupinus albus HOM05D000456 ORTHO05D000887 2.7e-06 55.5 47 53.2
Prupe.6G195900 Prunus persica HOM05D000456 ORTHO05D000887 2.7e-06 55.5 47 55.3
Hund16875 Selenicereus undatus HOM05D000456 ORTHO05D000887 2.7e-06 55.5 47 53.2
Ah.05g170580 Amaranthus hybridus HOM05D000456 ORTHO05D000887 3.5e-06 55.1 47 55.3
BcaC02g08651 Brassica carinata HOM05D000456 ORTHO05D000887 3.5e-06 55.1 49 57.1
CiPaw.11G160600 Carya illinoinensis HOM05D000456 ORTHO05D000887 3.5e-06 55.1 47 53.2
Ca_03981_v3 Cicer arietinum L. HOM05D000456 ORTHO05D000887 3.5e-06 55.1 47 57.4
Cc07_g14360 Coffea canephora HOM05D000456 ORTHO05D000887 3.5e-06 55.1 47 55.3
COL.COLO4_27334 Corchorus olitorius HOM05D000456 ORTHO05D000887 3.5e-06 55.1 48 52.1
Duzib093G0461 Durio zibethinus HOM05D000456 ORTHO05D000887 3.5e-06 55.1 47 53.2
Oeu057290.1 Olea europaea HOM05D000456 ORTHO05D000887 3.5e-06 55.1 47 53.2
Rhsim06G0074700 Rhododendron simsii HOM05D000456 ORTHO05D000887 3.5e-06 55.1 47 53.2
Sc03g0000220 Simmondsia chinensis HOM05D000456 ORTHO05D000887 3.5e-06 55.1 47 53.2
Sc03g0000250 Simmondsia chinensis HOM05D000456 ORTHO05D000887 3.5e-06 55.1 47 53.2
vmacro18572 Vaccinium macrocarpon HOM05D000456 ORTHO05D000887 3.5e-06 55.1 47 55.3
BcaC01g00016 Brassica carinata HOM05D000456 ORTHO05D000887 4.5e-06 54.7 47 55.3
A08p25810 Brassica napus HOM05D000456 ORTHO05D000887 4.5e-06 54.7 47 55.3
C03p74830 Brassica napus HOM05D000456 ORTHO05D000887 4.5e-06 54.7 47 55.3
BolC3t19732H Brassica oleracea HOM05D000456 ORTHO05D000887 4.5e-06 54.7 47 55.3
BraA08t34536Z Brassica rapa HOM05D000456 ORTHO05D000887 4.5e-06 54.7 47 55.3
FAN26G0821 Fragaria x ananassa HOM05D000456 ORTHO05D000887 4.5e-06 54.7 47 53.2
Lalb_Chr14g0363851 Lupinus albus HOM05D000456 ORTHO05D000887 4.5e-06 54.7 47 46.8
Peaxi162Scf00447g00091 Petunia axillaris HOM05D000456 ORTHO05D000887 4.5e-06 54.7 47 53.2
Hund16547 Selenicereus undatus HOM05D000456 ORTHO05D000887 4.5e-06 54.7 47 55.3
VMungo0251G3184 Vigna mungo HOM05D000456 ORTHO05D000887 4.5e-06 54.7 48 52.1
ATR0022G008 Amborella trichopoda HOM05D000456 ORTHO05D000887 5.9e-06 54.3 47 51.1
CiPaw.01G047600 Carya illinoinensis HOM05D000456 ORTHO05D000887 5.9e-06 54.3 47 55.3
Duzib264G0355 Durio zibethinus HOM05D000456 ORTHO05D000887 5.9e-06 54.3 47 51.1
Gohir.A02G130700 Gossypium hirsutum HOM05D000456 ORTHO05D000887 5.9e-06 54.3 48 50.0
Gohir.D03G041900 Gossypium hirsutum HOM05D000456 ORTHO05D000887 5.9e-06 54.3 48 50.0
Gorai.003G042500 Gossypium raimondii HOM05D000456 ORTHO05D000887 5.9e-06 54.3 48 50.0
Lj1g0018020 Lotus japonicus HOM05D000456 ORTHO05D000887 5.9e-06 54.3 47 55.3
Nitab4.5_0000902g0070 Nicotiana tabacum HOM05D000456 ORTHO05D000887 5.9e-06 54.3 46 52.2
Nitab4.5_0001122g0180 Nicotiana tabacum HOM05D000456 ORTHO05D000887 5.9e-06 54.3 46 52.2
VMungo1383G0245 Vigna mungo HOM05D000456 ORTHO05D000887 5.9e-06 54.3 47 51.1
Carub.0001s2664 Capsella rubella HOM05D000456 ORTHO05D000887 7.8e-06 53.9 47 55.3
AUR62003283 Chenopodium quinoa HOM05D000456 ORTHO05D000887 7.8e-06 53.9 47 53.2
CsaV3_3G030140 Cucumis sativus L. HOM05D000456 ORTHO05D000887 7.8e-06 53.9 48 50.0
Sed0006640 Sechium edule HOM05D000456 ORTHO05D000887 7.8e-06 53.9 47 51.1


User provided reference genes

Program Settings