Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 2.5e-167 592.0 300 100.0
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 1.1e-133 480.3 299 82.6
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 1.5e-132 476.5 298 80.9
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 3.8e-131 471.9 303 80.5
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 1.1e-130 470.3 300 80.7
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 2.4e-130 469.2 298 80.5
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 4.6e-129 464.9 296 80.4
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 4.6e-129 464.9 296 81.1
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 6.0e-129 464.5 304 80.3
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 1.7e-128 463.0 299 80.3
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 1.7e-128 463.0 300 80.0
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 2.3e-128 462.6 298 80.2
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 5.1e-128 461.5 300 81.0
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 6.6e-128 461.1 300 79.3
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 8.7e-128 460.7 299 79.6
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 1.1e-127 460.3 299 79.9
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 2.5e-127 459.1 304 79.3
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.3e-126 456.8 299 79.3
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 3.6e-126 455.3 299 78.9
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 4.8e-126 454.9 298 79.2
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 8.1e-126 454.1 296 79.7
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.1e-125 453.8 299 78.9
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 1.8e-125 453.0 309 77.0
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 5.3e-125 451.4 298 78.5
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 5.3e-125 451.4 299 78.9
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 3.4e-124 448.7 300 77.0
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 4.5e-124 448.4 296 79.4
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 2.9e-123 445.7 303 77.2
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 2.9e-123 445.7 301 76.7
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 2.9e-123 445.7 300 78.3
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 1.4e-122 443.4 298 76.5
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 4.6e-121 438.3 299 76.9
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 7.9e-121 437.6 298 78.2
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 7.9e-121 437.6 298 76.8
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 7.9e-121 437.6 298 76.8
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 1.0e-120 437.2 298 76.8
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 3.0e-120 435.6 300 74.7
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 5.1e-120 434.9 298 77.2
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 6.7e-120 434.5 293 78.2
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 6.7e-120 434.5 301 74.1
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 8.7e-120 434.1 295 76.6
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.5e-119 433.3 298 75.8
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 1.5e-119 433.3 296 76.7
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 5.6e-119 431.4 273 80.6
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 7.4e-119 431.0 296 77.0
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 9.6e-119 430.6 296 76.7
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.3e-118 430.3 312 74.4
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.6e-118 429.9 298 75.2
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 2.8e-118 429.1 271 79.7
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 2.8e-118 429.1 273 80.2
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 2.8e-118 429.1 300 77.3
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 2.8e-118 429.1 294 76.2
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 3.7e-118 428.7 297 75.1
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 3.1e-117 425.6 298 74.5
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 4.0e-117 425.2 296 75.0
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 6.9e-117 424.5 304 74.7
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 6.9e-117 424.5 295 76.6
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 1.2e-116 423.7 297 76.4
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 1.2e-116 423.7 297 74.7
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 2.0e-116 422.9 301 74.4
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 3.4e-116 422.2 304 74.3
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 4.5e-116 421.8 295 76.9
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 7.6e-116 421.0 301 75.1
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 1.3e-115 420.2 304 74.0
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 1.7e-115 419.9 274 79.6
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 2.9e-115 419.1 299 74.6
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 2.9e-115 419.1 350 67.7
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 4.9e-115 418.3 301 74.4
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 4.9e-115 418.3 297 74.4
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 2.5e-114 416.0 301 73.4
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 3.2e-114 415.6 271 78.2
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.2e-113 413.7 303 74.3
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.6e-113 413.3 258 83.7
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 6.0e-113 411.4 293 73.7
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 1.3e-112 410.2 302 72.8
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 3.0e-112 409.1 288 74.0
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.9e-112 408.7 254 83.5
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 3.9e-112 408.7 323 69.7
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 3.9e-112 408.7 323 69.7
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 8.7e-112 407.5 272 77.6
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.5e-111 406.8 272 77.2
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.9e-111 406.4 283 76.3
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 4.3e-111 405.2 299 72.9
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 7.4e-111 404.4 298 72.8
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 2.1e-110 402.9 298 69.8
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.8e-110 402.5 302 72.2
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 3.7e-110 402.1 289 73.4
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 3.7e-110 402.1 284 74.6
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 4.8e-110 401.7 296 69.9
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 6.3e-110 401.4 303 71.3
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 1.1e-109 400.6 298 69.5
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 2.4e-109 399.4 296 69.6
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 1.2e-108 397.1 296 70.3
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 2.0e-108 396.4 305 72.5
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 3.4e-108 395.6 300 70.0
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 1.3e-107 393.7 248 81.0
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 1.7e-107 393.3 263 78.3
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 2.2e-107 392.9 296 72.6
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 2.9e-107 392.5 298 71.5
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 3.8e-107 392.1 248 80.6
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 5.0e-107 391.7 248 80.6
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 1.1e-106 390.6 247 82.6
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 1.9e-106 389.8 296 70.9
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 3.2e-106 389.0 255 80.0
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 1.0e-104 384.0 297 69.7
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 3.0e-104 382.5 257 78.6
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 3.9e-104 382.1 275 74.5
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 5.1e-104 381.7 296 67.6
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 7.4e-103 377.9 217 88.5
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 9.7e-103 377.5 245 80.8
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 3.7e-102 375.6 247 78.9
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 6.9e-101 371.3 252 75.8
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 4.5e-100 368.6 320 64.7
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 4.2e-98 362.1 238 79.0
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.6e-97 359.0 301 66.4
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 6.1e-97 358.2 302 65.2
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.6e-92 342.8 301 64.8
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 4.5e-92 342.0 280 66.4
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.0e-91 340.9 221 80.5
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 5.0e-91 338.6 287 64.5
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 8.5e-91 337.8 283 64.0
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 2.2e-86 323.2 289 63.7
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 6.3e-86 321.6 214 77.6
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 4.5e-84 315.5 240 69.6
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 5.0e-83 312.0 215 77.2
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 9.4e-82 307.8 236 70.3
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.4e-80 303.9 180 86.7
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 1.5e-79 300.4 250 65.6
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.2e-78 296.6 180 82.2
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 1.8e-77 293.5 297 56.2
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 7.0e-77 291.6 311 51.4
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 1.6e-76 290.4 252 62.7
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 5.0e-75 285.4 273 57.9
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 3.2e-74 282.7 310 52.3
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 7.2e-74 281.6 222 65.8
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 8.0e-73 278.1 281 57.7
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 4.1e-69 265.8 255 58.8
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 8.5e-67 258.1 171 74.3
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 6.1e-65 251.9 178 69.7
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 5.4e-61 238.8 205 65.4
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 5.9e-60 235.3 164 73.8
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 5.0e-59 232.3 255 59.6
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 1.5e-58 230.7 140 83.6
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 1.7e-51 207.2 177 65.5
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 7.3e-50 201.8 222 46.4
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.7e-49 199.1 157 67.5
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 2.2e-46 190.3 147 68.0
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 1.1e-42 177.9 120 79.2
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 9.8e-39 164.9 111 74.8
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.1e-29 134.8 82 81.7
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 2.7e-28 130.2 78 82.1
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 1.1e-26 124.8 64 92.2
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 2.5e-18 97.1 66 77.3
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 9.6e-18 95.1 95 54.7
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 5.8e-15 85.9 115 49.6
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 1.7e-14 84.3 56 75.0
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 1.4e-13 81.3 88 54.5
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 2.7e-12 77.0 57 68.4
TAR636G0182 Trochodendron aralioides HOM05D004545 ORTHO05D005420 2.9e-06 57.0 60 55.0


User provided reference genes

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