Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 0.0e+00 1360.1 682 100.0
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 2.8e-251 872.1 678 66.5
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 4.9e-227 791.6 668 62.7
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 8.3e-227 790.8 668 63.0
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 2.3e-224 782.7 684 60.2
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 2.3e-224 782.7 684 61.1
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 5.1e-224 781.6 680 61.5
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 1.5e-223 780.0 679 60.8
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 2.5e-223 779.2 667 61.8
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 3.6e-222 775.4 641 62.2
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 8.1e-222 774.2 667 60.9
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 2.9e-219 765.8 673 59.9
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 1.0e-216 757.3 677 59.7
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 3.0e-216 755.7 687 59.5
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.6e-214 750.0 687 59.2
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 4.7e-214 748.4 684 58.5
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 2.4e-213 746.1 725 56.0
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 4.0e-213 745.3 690 59.1
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 2.2e-211 739.6 684 58.3
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 8.4e-211 737.6 708 56.1
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 1.1e-210 737.3 692 57.1
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 2.4e-210 736.1 683 58.3
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.2e-209 733.8 697 57.5
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 1.2e-209 733.8 672 57.3
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.6e-209 733.4 672 57.3
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 1.6e-209 733.4 686 57.0
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 3.5e-209 732.3 688 58.4
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 4.6e-209 731.9 620 62.1
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 6.0e-209 731.5 689 57.6
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 2.3e-208 729.6 692 57.5
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.3e-208 729.6 707 56.7
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 5.1e-208 728.4 699 56.4
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 6.6e-208 728.0 692 57.2
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 1.5e-207 726.9 778 53.2
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 6.2e-206 721.5 709 56.6
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 1.8e-205 719.9 648 58.5
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 4.0e-205 718.8 702 56.6
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 4.4e-204 715.3 697 56.7
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 5.8e-204 714.9 654 57.6
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 2.4e-202 709.5 653 57.6
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 3.5e-201 705.7 648 58.0
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 6.0e-201 704.9 639 58.4
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.0e-200 704.1 672 56.0
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 5.1e-200 701.8 705 54.6
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 6.6e-200 701.4 654 56.1
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 3.3e-199 699.1 622 59.3
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 4.3e-199 698.7 706 55.1
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 4.3e-199 698.7 648 57.7
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 1.6e-198 696.8 656 56.4
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 2.1e-198 696.4 698 54.9
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 8.1e-198 694.5 700 55.3
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 1.4e-197 693.7 650 56.2
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 3.1e-197 692.6 695 54.4
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 4.0e-197 692.2 650 56.5
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 4.0e-197 692.2 690 55.4
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 1.5e-196 690.3 718 53.6
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 2.6e-196 689.5 695 54.1
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 3.4e-196 689.1 707 54.3
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 5.8e-196 688.3 694 53.6
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 9.9e-196 687.6 683 53.0
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 6.4e-195 684.9 661 56.1
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 8.4e-195 684.5 659 55.4
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 2.4e-194 682.9 694 54.0
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 2.4e-194 682.9 655 56.0
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 4.2e-194 682.2 683 55.1
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 5.4e-194 681.8 684 55.3
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 1.6e-193 680.2 634 57.1
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 2.1e-193 679.9 659 55.5
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 2.7e-193 679.5 678 55.6
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 2.7e-193 679.5 689 54.7
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 4.6e-193 678.7 683 54.3
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 6.0e-193 678.3 607 58.5
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 2.3e-192 676.4 667 54.0
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 1.9e-191 673.3 698 53.2
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 3.3e-191 672.5 611 58.4
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 1.3e-190 670.6 700 53.7
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 2.4e-189 666.4 639 54.9
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 4.0e-189 665.6 685 52.8
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 4.0e-189 665.6 660 53.5
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 9.0e-189 664.5 672 55.2
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 2.6e-188 662.9 661 53.4
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 5.8e-188 661.8 672 53.6
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 1.7e-187 660.2 695 51.7
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 3.8e-187 659.1 691 52.5
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 4.9e-187 658.7 652 54.1
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 1.1e-186 657.5 681 53.9
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 9.3e-186 654.4 639 54.6
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 6.0e-185 651.7 553 61.8
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 6.0e-185 651.7 661 55.5
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 7.9e-185 651.4 691 51.8
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 5.1e-184 648.7 700 53.0
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 1.1e-183 647.5 706 52.3
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 4.3e-183 645.6 695 50.8
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 5.6e-183 645.2 629 54.7
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 2.0e-180 636.7 654 53.1
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 2.9e-179 632.9 664 53.2
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 2.9e-179 632.9 653 54.7
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 3.2e-178 629.4 667 52.2
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 1.2e-177 627.5 652 52.5
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 1.2e-177 627.5 604 55.0
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 4.6e-177 625.5 662 50.8
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 6.1e-177 625.2 692 51.3
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 5.1e-176 622.1 674 51.2
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 6.7e-176 621.7 686 51.9
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 1.1e-175 620.9 692 51.2
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 4.3e-175 619.0 645 51.5
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 1.6e-174 617.1 699 52.9
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 2.2e-174 616.7 647 53.6
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 1.8e-173 613.6 637 52.1
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 6.9e-173 611.7 639 53.1
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 2.6e-172 609.8 641 52.0
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 5.9e-172 608.6 692 50.0
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 7.7e-172 608.2 692 50.0
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 1.1e-170 604.4 579 55.4
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 4.6e-169 599.0 585 54.2
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 1.4e-168 597.4 632 51.1
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 8.8e-168 594.7 671 51.0
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 2.5e-167 593.2 696 49.7
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 9.1e-165 584.7 619 52.8
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 7.2e-162 575.1 656 49.5
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.2e-161 574.3 688 47.1
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 1.4e-160 570.9 632 48.7
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 6.7e-160 568.5 645 50.2
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 1.2e-156 557.8 649 48.5
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 2.5e-154 550.1 598 51.3
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 3.9e-152 542.7 676 46.4
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 1.5e-151 540.8 458 61.4
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 2.0e-151 540.4 649 49.3
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 8.5e-147 525.0 684 46.2
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 4.0e-144 516.2 512 56.2
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 3.4e-143 513.1 496 54.6
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 1.1e-141 508.1 674 46.6
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 2.6e-135 486.9 516 52.3
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 3.7e-126 456.4 497 52.1
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 2.4e-125 453.8 739 39.6
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 4.7e-121 439.5 652 40.6
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.3e-118 431.4 411 55.5
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 3.7e-118 429.9 672 39.3
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 1.2e-116 424.9 649 41.8
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 2.1e-113 414.1 405 56.5
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 2.8e-113 413.7 648 39.7
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 4.7e-113 412.9 650 40.5
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 8.3e-110 402.1 736 38.0
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 3.2e-109 400.2 644 40.5
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.8e-104 384.4 658 40.0
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 3.1e-104 383.6 621 39.0
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 6.4e-102 375.9 760 37.5
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 2.1e-100 370.9 799 35.3
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 1.0e-99 368.6 656 38.4
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 5.6e-90 336.3 493 41.8
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 5.3e-88 329.7 612 35.8
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 4.4e-87 326.6 520 39.2
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 3.2e-85 320.5 736 32.7
HPP92_011782 Vanilla planifolia HOM05D003996 ORTHO05D004665 4.3e-82 310.1 343 46.1
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 6.2e-81 306.2 213 69.5
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 5.8e-79 299.7 209 70.3
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 1.3e-78 298.5 513 37.2
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 1.9e-74 284.6 210 69.0
Hund05567 Selenicereus undatus HOM05D003996 ORTHO05D004665 2.8e-73 280.8 513 36.5
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 3.5e-60 237.3 347 39.2
Actinidia03595 Actinidia chinensis HOM05D003996 ORTHO05D004665 9.1e-32 142.9 108 64.8
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.7e-30 138.7 233 37.8
Actinidia03594 Actinidia chinensis HOM05D003996 ORTHO05D004665 4.4e-26 124.0 116 55.2
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 5.4e-24 117.1 66 81.8
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 5.4e-24 117.1 186 39.2
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 1.4e-19 102.4 70 72.9
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 9.2e-16 89.7 111 46.8
Cre12.g513852 Chlamydomonas reinhardtii HOM05D003996 ORTHO05D004665 2.1e-12 78.6 164 34.8
MCO15G069 Micromonas commoda HOM05D003996 ORTHO05D004665 3.0e-11 74.7 121 37.2
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 1.2e-10 72.8 52 65.4
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 2.9e-09 68.2 54 55.6
Ah.08g214440 Amaranthus hybridus HOM05D003996 ORTHO05D004665 7.0e-08 63.5 84 45.2
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 7.8e-07 60.1 49 57.1
DCAR_019433 Daucus carota HOM05D003996 ORTHO05D004665 1.3e-06 59.3 51 60.8


User provided reference genes

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