Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 1.7e-106 389.4 210 100.0
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 3.7e-69 265.4 211 70.1
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 3.2e-68 262.3 207 68.1
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 3.9e-66 255.4 208 65.9
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 5.1e-66 255.0 207 63.3
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 3.3e-65 252.3 207 65.2
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 4.7e-64 248.4 205 61.0
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 1.4e-63 246.9 207 65.2
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 4.0e-63 245.4 207 60.9
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 2.6e-62 242.7 202 63.4
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 2.6e-62 242.7 206 60.2
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 1.3e-61 240.4 164 75.0
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 1.7e-61 240.0 193 62.7
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 2.2e-61 239.6 195 65.1
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 2.9e-61 239.2 155 74.2
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 3.2e-60 235.7 155 76.8
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 7.1e-60 234.6 194 65.5
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 2.1e-59 233.0 204 59.8
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 3.5e-59 232.3 203 62.1
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 4.6e-59 231.9 194 64.4
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 1.7e-58 229.9 207 60.4
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 3.0e-58 229.2 194 64.9
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 3.9e-58 228.8 203 62.1
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 8.7e-58 227.6 155 71.6
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 1.5e-57 226.9 172 64.5
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 1.5e-57 226.9 196 60.2
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 1.5e-57 226.9 190 63.2
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 2.5e-57 226.1 206 54.9
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 2.5e-57 226.1 203 60.6
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 3.3e-57 225.7 188 63.8
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 1.3e-56 223.8 194 62.9
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 1.3e-56 223.8 197 61.9
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 1.6e-56 223.4 190 64.2
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 2.1e-56 223.0 208 55.3
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 2.1e-56 223.0 205 58.5
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 3.6e-56 222.2 197 58.9
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 3.6e-56 222.2 197 58.4
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 3.1e-55 219.2 224 55.4
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 3.1e-55 219.2 207 56.5
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 1.2e-54 217.2 194 59.3
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 2.6e-54 216.1 194 57.7
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 4.4e-54 215.3 197 61.9
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 4.4e-54 215.3 199 57.8
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 5.8e-54 214.9 197 57.4
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 7.6e-54 214.5 215 57.7
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 9.9e-54 214.2 201 56.2
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 9.9e-54 214.2 196 57.7
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 9.9e-54 214.2 203 60.1
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 1.3e-53 213.8 191 64.9
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 1.7e-53 213.4 199 56.8
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 2.9e-53 212.6 155 69.7
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 2.9e-53 212.6 202 53.0
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 3.8e-53 212.2 200 56.0
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 8.4e-53 211.1 193 58.5
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.1e-52 210.7 200 55.5
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.1e-52 210.7 200 55.5
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 1.4e-52 210.3 213 51.6
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 3.2e-52 209.1 195 56.9
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 3.2e-52 209.1 196 57.1
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 4.2e-52 208.8 204 55.9
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 5.4e-52 208.4 193 62.7
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 7.1e-52 208.0 200 55.5
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 9.3e-52 207.6 194 58.8
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 2.1e-51 206.5 179 57.0
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 3.5e-51 205.7 155 67.1
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 3.5e-51 205.7 200 55.0
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 4.6e-51 205.3 193 56.5
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 8.7e-50 201.1 214 57.5
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 5.6e-49 198.4 193 52.3
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 7.3e-49 198.0 181 57.5
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 9.6e-49 197.6 154 63.6
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 2.1e-48 196.4 154 63.6
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 2.8e-48 196.1 155 63.2
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 4.8e-48 195.3 196 57.1
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 4.8e-48 195.3 155 62.6
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 4.8e-48 195.3 155 62.6
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 4.8e-48 195.3 155 62.6
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 1.4e-47 193.7 194 57.2
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 1.8e-47 193.4 198 60.1
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 5.3e-47 191.8 155 63.2
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 3.4e-46 189.1 158 62.0
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 7.6e-46 188.0 151 62.9
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 1.3e-45 187.2 151 62.9
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 1.7e-45 186.8 201 52.2
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 5.4e-44 181.8 196 52.0
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 1.2e-43 180.6 179 53.1
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 5.1e-42 175.3 124 68.5
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 4.3e-41 172.2 162 56.8
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 5.6e-41 171.8 192 49.5
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-40 170.6 183 47.0
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 1.6e-40 170.2 185 51.4
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 3.1e-39 166.0 186 47.3
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 3.4e-38 162.5 122 68.9
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 2.2e-37 159.8 124 63.7
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 1.4e-36 157.1 130 63.1
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 2.5e-36 156.4 124 62.9
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 3.0e-34 149.4 198 50.5
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 1.9e-33 146.7 121 61.2
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 2.5e-33 146.4 193 45.1
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 2.1e-32 143.3 122 54.9
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 1.5e-30 137.1 125 52.8
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 3.2e-28 129.4 97 66.0
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 2.1e-27 126.7 128 58.6
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 2.1e-27 126.7 156 48.1
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 1.0e-26 124.4 102 63.7
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 1.8e-26 123.6 101 62.4
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 4.3e-25 119.0 131 47.3
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 1.6e-24 117.1 82 68.3
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 1.4e-23 114.0 110 56.4
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 1.5e-22 110.5 94 62.8
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 1.0e-21 107.8 82 65.9
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.1e-20 104.4 116 51.7
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 1.9e-20 103.6 111 51.4
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 4.2e-20 102.4 109 46.8
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 1.0e-18 97.8 142 43.7
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 4.3e-17 92.4 143 38.5
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 4.3e-17 92.4 143 38.5
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 1.3e-16 90.9 87 55.2
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 1.4e-15 87.4 63 69.8
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 2.4e-15 86.7 61 67.2
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 4.1e-15 85.9 108 44.4
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 2.7e-11 73.2 51 66.7
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 6.1e-11 72.0 83 45.8
Hund04586 Selenicereus undatus HOM05D035355 ORTHO05D008216 3.0e-10 69.7 106 41.5
Hund04588 Selenicereus undatus HOM05D035355 ORTHO05D008216 3.0e-10 69.7 106 41.5
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 4.4e-09 65.9 135 34.8
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 7.4e-09 65.1 68 47.1
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 9.7e-09 64.7 58 55.2
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 2.2e-08 63.5 58 53.4
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 7.0e-07 58.5 58 51.7


User provided reference genes

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