Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 0.0e+00 1176.0 585 100.0
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 1.7e-281 972.2 579 82.7
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 2.9e-268 928.3 585 78.6
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 5.4e-267 924.1 573 78.5
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 3.9e-265 917.9 580 76.7
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 1.5e-264 916.0 583 77.7
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 5.6e-264 914.1 581 77.3
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 9.5e-264 913.3 582 77.5
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 1.1e-262 909.8 578 77.3
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 1.8e-262 909.1 581 76.9
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 4.0e-262 907.9 577 78.0
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 3.8e-260 901.4 579 75.6
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 5.4e-259 897.5 576 76.4
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 1.2e-258 896.3 582 75.9
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 4.6e-258 894.4 579 75.8
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.3e-257 892.1 582 75.1
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 8.6e-257 890.2 583 75.1
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 8.6e-257 890.2 583 75.1
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 1.1e-256 889.8 580 75.5
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 1.6e-255 885.9 583 75.0
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 9.0e-254 880.2 582 74.6
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 1.5e-253 879.4 582 74.4
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 3.4e-253 878.2 567 75.5
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 9.9e-253 876.7 573 74.5
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 1.7e-252 875.9 583 73.1
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 1.9e-251 872.5 569 74.5
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 5.4e-251 870.9 583 75.1
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 1.2e-250 869.8 580 73.8
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 2.1e-250 869.0 569 74.9
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 2.7e-250 868.6 580 72.9
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 1.9e-248 862.4 584 73.3
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 2.5e-248 862.1 564 74.1
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 4.3e-248 861.3 567 74.4
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 4.3e-248 861.3 567 74.4
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 1.6e-247 859.4 576 74.5
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 2.1e-247 859.0 564 73.9
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 2.8e-247 858.6 564 74.3
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 2.8e-247 858.6 563 73.4
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 6.2e-247 857.4 600 71.7
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 1.4e-246 856.3 564 73.9
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 4.0e-246 854.7 564 74.5
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 1.5e-245 852.8 584 72.1
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 3.4e-245 851.7 566 72.8
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 4.5e-245 851.3 571 73.7
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 9.9e-245 850.1 560 75.0
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 1.3e-244 849.7 565 74.3
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 2.9e-244 848.6 572 72.4
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 2.4e-243 845.5 572 72.2
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 1.6e-242 842.8 574 72.6
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 6.0e-242 840.9 567 72.1
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 3.0e-241 838.6 572 71.7
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 5.1e-241 837.8 572 72.4
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 6.7e-241 837.4 573 72.1
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 1.5e-240 836.3 575 72.2
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 2.5e-240 835.5 581 72.3
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 3.3e-240 835.1 598 70.2
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 8.1e-239 830.5 567 72.3
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 3.1e-238 828.6 559 73.9
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 1.2e-237 826.6 588 70.7
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 4.5e-237 824.7 564 71.8
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 9.9e-237 823.5 557 72.7
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 2.9e-236 822.0 606 67.7
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 2.9e-236 822.0 574 71.3
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 4.2e-235 818.1 575 70.4
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 9.3e-235 817.0 571 69.7
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 1.2e-234 816.6 573 70.0
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 4.6e-234 814.7 581 70.6
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 7.9e-234 813.9 573 69.8
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 1.3e-233 813.1 573 70.5
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 1.8e-233 812.8 573 70.5
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 3.9e-233 811.6 576 70.0
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 2.5e-232 808.9 575 69.6
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 3.3e-232 808.5 561 70.6
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 1.3e-231 806.6 567 69.5
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 1.3e-231 806.6 575 69.2
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 3.7e-231 805.1 624 65.5
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 7.6e-229 797.3 573 70.0
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 8.4e-228 793.9 569 69.6
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 6.5e-212 741.1 467 77.1
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 3.3e-208 728.8 472 75.6
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 8.2e-207 724.2 582 63.2
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 6.9e-206 721.1 559 66.2
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 2.5e-203 712.6 568 63.6
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 5.2e-201 704.9 467 73.2
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 1.1e-200 703.7 627 58.2
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 4.2e-187 658.7 422 76.8
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 2.2e-183 646.4 639 54.0
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 1.7e-180 636.7 426 73.5
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 5.0e-180 635.2 416 74.3
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 4.7e-178 628.6 409 73.6
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 1.4e-174 617.1 425 71.3
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 4.3e-171 605.5 404 73.5
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 5.2e-169 598.6 580 55.2
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 5.8e-168 595.1 604 53.5
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 5.8e-168 595.1 604 53.5
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 3.9e-164 582.4 406 71.9
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 4.7e-162 575.5 425 69.2
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 2.3e-161 573.2 407 71.0
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 1.6e-154 550.4 546 53.7
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 7.3e-139 498.4 312 76.0
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 8.4e-135 485.0 303 76.6
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 6.0e-125 452.2 313 69.0
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 2.8e-122 443.4 556 45.7
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 4.3e-115 419.5 656 39.0
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 1.2e-104 384.8 239 80.3
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 2.7e-85 320.5 185 84.3
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.2e-77 295.0 563 36.1
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 5.3e-73 279.6 162 84.0
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 5.0e-63 246.5 400 37.8
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.3e-58 231.9 154 70.1
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 3.2e-57 227.3 148 70.9
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 1.6e-53 214.9 120 84.2
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 2.6e-51 207.6 112 86.6
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 1.7e-47 194.9 104 85.6
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 6.6e-47 193.0 159 64.8
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 1.1e-44 185.7 110 83.6
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 7.1e-33 146.4 143 56.6
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 1.0e-23 115.9 68 75.0
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.6e-16 92.0 54 75.9
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 1.5e-11 75.5 162 31.5
Os11g0622600 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 1.5e-06 58.9 144 29.2
Os03g0792500 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 3.3e-06 57.8 198 25.3
Os08g0198300 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.3e-06 57.4 164 26.8
Os08g0516550 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 9.6e-06 56.2 164 27.4


User provided reference genes

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