Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 2838.1 1402 100.0
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1568.9 1409 57.3
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1556.6 1388 58.9
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1552.7 1456 55.6
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1522.7 1463 54.6
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1503.8 1403 55.6
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1479.2 1415 54.8
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1478.8 1409 55.2
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1477.2 1413 55.0
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1474.5 1401 55.2
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1464.5 1408 55.3
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1463.4 1415 54.6
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1461.8 1414 54.3
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1460.3 1397 54.8
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1456.0 1398 54.4
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1454.9 1413 54.9
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1454.5 1400 55.1
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1448.3 1409 53.7
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1442.9 1413 54.4
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1439.5 1412 53.8
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1437.9 1500 51.7
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1434.9 1407 54.2
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1432.5 1407 53.9
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1429.5 1410 53.9
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1428.3 1403 53.7
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1426.4 1420 53.5
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1426.4 1399 54.0
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1426.0 1406 53.8
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1421.4 1393 55.1
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1420.6 1409 52.8
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1409.0 1419 53.1
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1407.5 1406 54.1
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1401.3 1414 52.6
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1397.9 1398 51.8
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1396.7 1415 52.3
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1395.6 1418 52.4
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1389.8 1366 54.0
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1387.5 1404 52.1
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1376.7 1380 53.6
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1366.7 1391 51.5
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 1361.3 1398 51.3
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1355.9 1386 50.0
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1348.2 1389 50.8
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1347.8 1395 50.8
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1343.2 1417 51.1
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 1343.2 1388 50.6
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 1340.5 1355 52.5
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 1337.8 1392 50.2
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1337.0 1418 50.2
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1335.9 1417 49.9
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 1334.7 1387 50.4
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 1333.9 1392 50.4
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1333.9 1393 50.5
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 1332.4 1395 50.4
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1330.1 1384 50.1
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1321.6 1438 49.4
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1321.6 1465 48.7
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 1320.8 1392 50.4
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1318.9 1428 50.7
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 1317.0 1397 50.0
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 1310.8 1395 50.0
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1302.0 1399 49.2
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 0.0e+00 1281.9 1161 56.1
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1280.8 1380 50.7
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1280.0 1476 49.1
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1274.6 1421 48.9
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 1267.7 1398 49.9
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1266.5 1157 56.2
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1252.3 1406 48.9
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 0.0e+00 1251.1 1174 55.8
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1248.0 1487 46.3
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 0.0e+00 1246.9 1392 49.7
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 0.0e+00 1246.5 1360 49.9
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 0.0e+00 1240.3 1392 49.0
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1234.2 1402 48.0
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 1229.9 1433 46.9
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1218.0 1411 48.1
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 0.0e+00 1176.4 1419 45.8
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 0.0e+00 1125.9 1402 45.4
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1101.3 1057 54.3
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 0.0e+00 1099.3 1059 54.2
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1089.7 1102 53.0
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 0.0e+00 1076.2 1423 43.4
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 4.4e-307 1058.5 967 55.5
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 7.0e-305 1051.2 1058 52.1
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 1.3e-303 1047.0 960 55.5
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 3.4e-283 979.2 955 53.7
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 5.8e-251 872.1 1397 38.7
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 3.6e-240 836.3 873 51.3
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 3.4e-235 819.7 1492 37.1
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 3.0e-223 780.0 1507 34.4
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 7.2e-217 758.8 1506 34.3
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 7.5e-214 748.8 744 53.1
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 2.0e-206 724.2 837 48.3
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 2.3e-191 674.1 781 48.8
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 8.9e-191 672.2 614 57.2
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 2.0e-190 671.0 1366 35.6
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 8.9e-175 619.0 786 44.7
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 2.2e-173 614.4 596 53.0
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 6.2e-168 596.3 603 51.2
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 5.4e-164 583.2 788 42.3
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 2.0e-158 564.7 1356 31.6
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 1.3e-154 552.0 587 49.6
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 9.9e-150 535.8 678 45.0
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 9.9e-150 535.8 891 39.4
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 5.3e-127 460.3 607 44.5
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 4.4e-113 414.1 388 55.9
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 1.1e-92 346.3 454 45.6
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 1.4e-87 329.3 318 53.1
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 7.7e-86 323.6 359 47.6
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.9e-71 275.8 333 46.8
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 1.2e-67 263.1 352 46.3
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 8.0e-67 260.4 272 52.9
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 2.3e-66 258.8 1622 22.9
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 2.1e-59 235.7 262 53.8
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 3.1e-58 231.9 282 54.3
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 6.8e-58 230.7 272 44.5
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 1.1e-55 223.4 204 52.5
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 7.1e-55 220.7 304 43.8
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 2.1e-54 219.2 1337 23.3
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 8.4e-48 197.2 211 48.3
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 2.5e-44 185.7 191 51.8
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 1.6e-43 183.0 207 47.8
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 2.4e-42 179.1 182 50.5
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-39 170.2 448 29.5
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 1.1e-36 160.2 188 47.9
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 7.6e-33 147.5 189 45.0
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.4e-31 142.5 155 43.9
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 2.3e-29 136.0 244 37.7
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 6.7e-29 134.4 116 50.0
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 5.6e-28 131.3 92 66.3
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 1.6e-22 113.2 74 67.6
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.1e-22 112.8 147 45.6
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 6.7e-21 107.8 94 58.5
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 3.3e-20 105.5 115 41.7
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 7.4e-20 104.4 72 62.5
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 1.6e-19 103.2 122 47.5
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 8.2e-19 100.9 143 41.3
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 4.0e-18 98.6 86 53.5
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 3.3e-12 79.0 56 66.1
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 7.4e-12 77.8 87 46.0
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 9.7e-12 77.4 470 22.3
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 3.7e-11 75.5 56 62.5
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.1e-10 72.0 48 72.9
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.1e-10 72.0 48 72.9
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 1.5e-09 70.1 80 47.5
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 5.9e-09 68.2 48 70.8
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 7.7e-09 67.8 48 70.8
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 1.0e-08 67.4 43 72.1
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.0e-08 67.4 49 71.4
MD17G1281500 Malus domestica HOM05D004810 ORTHO05D006272 8.5e-08 64.3 51 60.8
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.1e-07 63.9 57 57.9
Actinidia16142 Actinidia chinensis HOM05D002279 ORTHO05D006272 7.2e-07 61.2 35 71.4
MSTRG.14516 Avicennia marina HOM05D005961 ORTHO05D007391 9.4e-07 60.8 153 30.1
CARHR269490 Cardamine hirsuta HOM05D005961 ORTHO05D007391 9.4e-07 60.8 146 30.1
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 9.4e-07 60.8 143 35.0
Sp6g17980 Schrenkiella parvula HOM05D005961 ORTHO05D007391 2.7e-06 59.3 146 29.5
DCAR_013764 Daucus carota HOM05D005961 ORTHO05D007391 3.6e-06 58.9 142 28.9
Eucgr.L00018 Eucalyptus grandis HOM05D005323 ORTHO05D006820 3.6e-06 58.9 124 28.2
Thhalv10012761m.g Eutrema salsugineum HOM05D004661 ORTHO05D005827 3.6e-06 58.9 144 27.8
Lj6C229G10 Lonicera japonica HOM05D005323 ORTHO05D006820 3.6e-06 58.9 153 26.8
Cc07_g06500 Coffea canephora HOM05D002634 ORTHO05D003100 7.9e-06 57.8 132 29.5
Lalb_Chr04g0249001 Lupinus albus HOM05D001610 ORTHO05D001585 7.9e-06 57.8 180 27.8


User provided reference genes

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