Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.1e-40 169.9 112 100.0
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.1e-40 169.9 112 100.0
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.0e-28 130.2 112 70.5
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 2.2e-20 102.4 94 63.8
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.8e-20 101.7 94 61.7
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.8e-20 101.7 94 61.7
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 2.5e-19 99.0 97 70.1
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 3.2e-19 98.6 94 68.1
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 4.2e-19 98.2 94 59.6
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 1.2e-18 96.7 95 66.3
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 3.6e-18 95.1 96 61.5
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 2.3e-17 92.4 95 62.1
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 1.2e-16 90.1 90 66.7
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 1.2e-16 90.1 90 66.7
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 1.2e-16 90.1 95 66.3
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 1.5e-16 89.7 101 56.4
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 3.3e-16 88.6 95 58.9
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.3e-16 88.6 102 62.7
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 5.7e-16 87.8 93 57.0
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 7.5e-16 87.4 96 58.3
Eucgr.K00529 Eucalyptus grandis HOM05D003381 ORTHO05D003880 9.7e-16 87.0 97 62.9
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 1.3e-15 86.7 101 62.4
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.7e-15 86.3 88 59.1
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.7e-15 86.3 90 65.6
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 2.2e-15 85.9 99 56.6
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 2.2e-15 85.9 91 58.2
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 2.8e-15 85.5 89 55.1
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 3.7e-15 85.1 103 53.4
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 3.7e-15 85.1 86 59.3
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 3.7e-15 85.1 93 57.0
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 3.7e-15 85.1 90 66.7
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 3.7e-15 85.1 104 54.8
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 3.7e-15 85.1 92 65.2
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.8e-15 84.7 94 58.5
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 4.8e-15 84.7 94 64.9
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 6.3e-15 84.3 86 60.5
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 6.3e-15 84.3 107 55.1
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 6.3e-15 84.3 92 65.2
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 8.2e-15 84.0 89 60.7
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 1.1e-14 83.6 102 64.7
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.1e-14 83.6 109 58.7
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.1e-14 83.6 96 61.5
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 1.8e-14 82.8 105 53.3
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 1.8e-14 82.8 96 65.6
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 1.8e-14 82.8 96 56.2
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.8e-14 82.8 95 64.2
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 3.1e-14 82.0 86 58.1
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.1e-14 81.6 90 64.4
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 4.1e-14 81.6 89 65.2
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 4.1e-14 81.6 89 58.4
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 5.3e-14 81.3 85 57.6
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 5.3e-14 81.3 93 63.4
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 5.3e-14 81.3 103 53.4
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 5.3e-14 81.3 82 59.8
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 7.0e-14 80.9 82 58.5
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 7.0e-14 80.9 82 58.5
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 7.0e-14 80.9 87 62.1
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 7.0e-14 80.9 89 57.3
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 9.1e-14 80.5 93 54.8
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 9.1e-14 80.5 99 55.6
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 1.2e-13 80.1 98 60.2
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 2.0e-13 79.3 90 57.8
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 3.5e-13 78.6 80 63.8
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 3.5e-13 78.6 88 65.9
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 4.5e-13 78.2 87 56.3
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 4.5e-13 78.2 99 64.6
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 5.9e-13 77.8 93 51.6
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 5.9e-13 77.8 86 53.5
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 7.7e-13 77.4 92 55.4
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.0e-12 77.0 92 54.3
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.0e-12 77.0 90 56.7
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.0e-12 77.0 89 60.7
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 1.0e-12 77.0 90 56.7
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 1.0e-12 77.0 82 56.1
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.0e-12 77.0 82 57.3
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 1.3e-12 76.6 80 68.8
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 1.3e-12 76.6 97 53.6
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.3e-12 76.6 89 55.1
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 1.3e-12 76.6 98 56.1
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 1.7e-12 76.3 94 53.2
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 2.2e-12 75.9 77 59.7
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 2.2e-12 75.9 83 55.4
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 2.9e-12 75.5 98 62.2
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 2.9e-12 75.5 93 52.7
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 3.8e-12 75.1 64 70.3
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.8e-12 75.1 94 60.6
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.8e-12 75.1 98 52.0
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 5.0e-12 74.7 101 57.4
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 5.0e-12 74.7 86 57.0
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 6.5e-12 74.3 82 56.1
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 8.5e-12 73.9 76 67.1
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.1e-11 73.6 101 56.4
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.1e-11 73.6 101 56.4
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 1.1e-11 73.6 85 62.4
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.9e-11 72.8 89 58.4
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.9e-11 72.8 89 58.4
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 1.9e-11 72.8 95 60.0
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 1.9e-11 72.8 101 48.5
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 2.5e-11 72.4 82 52.4
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 2.5e-11 72.4 89 61.8
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 2.5e-11 72.4 89 52.8
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 3.2e-11 72.0 99 59.6
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 4.2e-11 71.6 62 66.1
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 4.2e-11 71.6 83 62.7
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 4.2e-11 71.6 99 57.6
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 9.4e-11 70.5 88 63.6
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 9.4e-11 70.5 84 53.6
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 9.4e-11 70.5 71 70.4
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.2e-10 70.1 98 56.1
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 1.6e-10 69.7 82 50.0
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 1.6e-10 69.7 80 53.8
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 2.1e-10 69.3 78 53.8
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 2.7e-10 68.9 94 58.5
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 2.7e-10 68.9 86 51.2
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 3.6e-10 68.6 90 50.0
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 4.7e-10 68.2 74 55.4
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 4.7e-10 68.2 90 50.0
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 8.0e-10 67.4 82 53.7
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 1.4e-09 66.6 56 69.6
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.4e-09 66.6 59 62.7
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 1.8e-09 66.2 79 51.9
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 1.8e-09 66.2 110 59.1
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 5.2e-09 64.7 77 50.6
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 8.8e-09 63.9 90 55.6
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 8.8e-09 63.9 51 70.6
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 1.5e-08 63.2 87 58.6
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 2.0e-08 62.8 89 61.8
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.6e-08 62.4 77 50.6
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 3.4e-08 62.0 97 46.4
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 7.5e-08 60.8 89 44.9
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 9.8e-08 60.5 84 57.1
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 2.2e-07 59.3 93 47.3
CiPaw.06G038100 Carya illinoinensis HOM05D003381 ORTHO05D003880 4.8e-07 58.2 105 57.1
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 4.8e-07 58.2 85 44.7
CDE04G0378 Ceratophyllum demersum HOM05D003381 ORTHO05D003880 1.1e-06 57.0 60 51.7
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 1.8e-06 56.2 53 64.2
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 2.4e-06 55.8 83 47.0
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 4.1e-06 55.1 80 48.8
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 5.4e-06 54.7 80 48.8
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 9.1e-06 53.9 95 44.2


User provided reference genes

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