Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 3.7e-47 191.4 113 100.0
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 4.3e-27 124.8 112 71.4
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.6e-26 122.9 112 70.5
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 7.8e-21 104.0 94 66.0
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.3e-20 103.2 94 63.8
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.3e-20 103.2 94 63.8
Eucgr.K00529 Eucalyptus grandis HOM05D003381 ORTHO05D003880 5.0e-20 101.3 95 73.7
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.5e-19 99.8 94 61.7
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 7.3e-19 97.4 97 62.9
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 9.5e-19 97.1 98 64.3
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 1.2e-18 96.7 91 64.8
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 1.1e-17 93.6 98 61.2
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 1.4e-17 93.2 101 59.4
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.8e-17 92.8 104 61.5
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 3.1e-17 92.0 109 56.0
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 3.1e-17 92.0 95 64.2
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 4.0e-17 91.7 87 64.4
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 4.0e-17 91.7 87 64.4
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 4.0e-17 91.7 94 59.6
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 4.0e-17 91.7 107 57.9
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 4.0e-17 91.7 116 53.4
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 5.2e-17 91.3 92 64.1
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 1.2e-16 90.1 100 60.0
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 1.5e-16 89.7 91 59.3
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 1.5e-16 89.7 96 59.4
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 2.0e-16 89.4 86 62.8
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 2.0e-16 89.4 96 59.4
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 2.0e-16 89.4 120 53.3
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 2.6e-16 89.0 99 58.6
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 4.4e-16 88.2 86 64.0
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 5.8e-16 87.8 91 61.5
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 7.5e-16 87.4 89 65.2
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 7.5e-16 87.4 104 53.8
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 1.7e-15 86.3 86 65.1
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 1.7e-15 86.3 105 58.1
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.7e-15 86.3 107 57.9
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 2.2e-15 85.9 87 63.2
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.9e-15 85.5 110 53.6
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.9e-15 85.5 105 58.1
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 2.9e-15 85.5 100 57.0
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 3.7e-15 85.1 82 63.4
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 3.7e-15 85.1 82 63.4
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 3.7e-15 85.1 101 58.4
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.7e-15 85.1 102 54.9
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 4.9e-15 84.7 82 63.4
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.1e-14 83.6 86 62.8
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 1.1e-14 83.6 86 61.6
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 1.1e-14 83.6 86 62.8
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 1.1e-14 83.6 107 53.3
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 1.1e-14 83.6 107 55.1
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 1.1e-14 83.6 92 59.8
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.1e-14 83.6 103 52.4
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.4e-14 83.2 107 55.1
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 1.4e-14 83.2 87 60.9
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 1.4e-14 83.2 82 63.4
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 1.9e-14 82.8 89 60.7
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 1.9e-14 82.8 89 60.7
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 1.9e-14 82.8 114 51.8
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 2.4e-14 82.4 105 58.1
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 2.4e-14 82.4 83 61.4
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 3.2e-14 82.0 108 55.6
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 3.2e-14 82.0 87 62.1
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 4.1e-14 81.6 92 59.8
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 4.1e-14 81.6 95 60.0
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 4.1e-14 81.6 115 54.8
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 5.4e-14 81.3 83 61.4
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 5.4e-14 81.3 87 60.9
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 7.0e-14 80.9 89 58.4
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 7.0e-14 80.9 121 50.4
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 7.0e-14 80.9 82 61.0
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 7.0e-14 80.9 92 57.6
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 9.2e-14 80.5 93 54.8
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 9.2e-14 80.5 92 58.7
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.6e-13 79.7 90 58.9
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 1.6e-13 79.7 86 62.8
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 2.7e-13 79.0 118 48.3
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 2.7e-13 79.0 108 56.5
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 3.5e-13 78.6 78 64.1
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 4.6e-13 78.2 95 60.0
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 6.0e-13 77.8 92 57.6
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 7.8e-13 77.4 76 64.5
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 7.8e-13 77.4 96 56.2
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 7.8e-13 77.4 82 58.5
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.0e-12 77.0 94 52.1
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.0e-12 77.0 108 54.6
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 1.3e-12 76.6 91 54.9
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.7e-12 76.3 118 48.3
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 1.7e-12 76.3 96 53.1
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 2.3e-12 75.9 88 58.0
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 2.3e-12 75.9 114 50.0
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 2.3e-12 75.9 90 56.7
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 3.0e-12 75.5 74 62.2
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 3.0e-12 75.5 90 56.7
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 5.0e-12 74.7 84 57.1
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 6.6e-12 74.3 108 52.8
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 8.6e-12 73.9 105 52.4
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 8.6e-12 73.9 108 52.8
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 8.6e-12 73.9 86 57.0
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 1.1e-11 73.6 80 60.0
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.5e-11 73.2 96 54.2
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.5e-11 73.2 96 54.2
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 2.5e-11 72.4 104 54.8
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 2.5e-11 72.4 88 56.8
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 3.3e-11 72.0 82 53.7
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 4.3e-11 71.6 68 63.2
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 4.3e-11 71.6 96 54.2
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 4.3e-11 71.6 118 46.6
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 4.3e-11 71.6 82 57.3
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 5.6e-11 71.2 97 52.6
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 7.3e-11 70.9 74 62.2
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 7.3e-11 70.9 77 57.1
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 9.5e-11 70.5 77 59.7
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 1.2e-10 70.1 65 63.1
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 3.6e-10 68.6 70 58.6
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 4.7e-10 68.2 87 55.2
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 6.2e-10 67.8 111 49.5
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 8.1e-10 67.4 79 55.7
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 8.1e-10 67.4 88 51.1
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 4.0e-09 65.1 88 54.5
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 5.2e-09 64.7 112 45.5
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 5.2e-09 64.7 100 48.0
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 6.8e-09 64.3 59 64.4
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.2e-08 63.5 113 49.6
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 2.6e-08 62.4 117 43.6
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 3.4e-08 62.0 52 67.3
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 3.4e-08 62.0 101 47.5
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 3.4e-08 62.0 94 45.7
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 4.4e-08 61.6 84 54.8
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 1.3e-07 60.1 91 49.5
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 1.3e-07 60.1 85 48.2
CDE04G0378 Ceratophyllum demersum HOM05D003381 ORTHO05D003880 2.2e-07 59.3 60 58.3
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 2.2e-07 59.3 115 44.3
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 2.2e-07 59.3 104 48.1
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 2.9e-07 58.9 106 45.3
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 4.9e-07 58.2 89 47.2
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 6.4e-07 57.8 87 48.3
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 8.3e-07 57.4 100 46.0
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 8.3e-07 57.4 82 52.4
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 1.1e-06 57.0 53 66.0


User provided reference genes

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