Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 2.5e-74 282.3 180 100.0
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 4.1e-40 168.7 182 62.6
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 2.5e-37 159.5 180 62.2
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 3.6e-28 129.0 168 56.5
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 6.8e-27 124.8 117 74.4
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.0e-26 123.2 112 74.1
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.0e-26 123.2 112 74.1
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 5.7e-26 121.7 115 72.2
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 1.7e-25 120.2 115 71.3
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 1.7e-25 120.2 179 54.2
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 1.7e-25 120.2 153 59.5
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.2e-25 119.8 115 73.9
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 3.7e-25 119.0 134 62.7
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 4.9e-25 118.6 114 73.7
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 6.3e-25 118.2 101 78.2
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 6.3e-25 118.2 115 74.8
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 6.3e-25 118.2 115 67.0
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 6.3e-25 118.2 111 74.8
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 1.1e-24 117.5 174 48.9
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.1e-24 117.5 150 59.3
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 1.8e-24 116.7 100 77.0
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 1.8e-24 116.7 182 50.5
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 3.1e-24 115.9 101 77.2
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 4.1e-24 115.5 112 72.3
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 7.0e-24 114.8 107 74.8
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 7.0e-24 114.8 107 74.8
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 7.0e-24 114.8 107 74.8
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 7.0e-24 114.8 101 78.2
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 9.2e-24 114.4 107 73.8
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 9.2e-24 114.4 114 71.9
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 9.2e-24 114.4 100 79.0
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.2e-23 114.0 101 77.2
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.2e-23 114.0 111 69.4
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 2.0e-23 113.2 101 76.2
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 2.7e-23 112.8 121 63.6
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 3.5e-23 112.5 112 69.6
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 4.5e-23 112.1 96 82.3
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 5.9e-23 111.7 101 76.2
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 5.9e-23 111.7 112 69.6
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 7.8e-23 111.3 103 78.6
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 7.8e-23 111.3 103 78.6
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 7.8e-23 111.3 112 69.6
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 1.0e-22 110.9 101 78.2
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 1.3e-22 110.5 113 65.5
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 1.3e-22 110.5 117 61.5
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 2.3e-22 109.8 101 74.3
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 2.3e-22 109.8 101 74.3
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 2.3e-22 109.8 101 74.3
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 2.3e-22 109.8 107 72.0
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 2.9e-22 109.4 100 78.0
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 5.0e-22 108.6 98 78.6
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 6.6e-22 108.2 111 67.6
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 8.6e-22 107.8 115 67.8
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.5e-21 107.1 103 73.8
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 1.5e-21 107.1 101 66.3
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 3.3e-21 105.9 111 65.8
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 3.3e-21 105.9 106 75.5
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 4.3e-21 105.5 95 76.8
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 7.3e-21 104.8 112 68.8
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 9.5e-21 104.4 101 73.3
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 9.5e-21 104.4 115 71.3
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 9.5e-21 104.4 106 71.7
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.2e-20 104.0 96 77.1
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 1.6e-20 103.6 122 62.3
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.6e-20 103.6 96 76.0
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 1.6e-20 103.6 98 77.6
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 1.6e-20 103.6 98 77.6
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 2.8e-20 102.8 105 71.4
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 3.6e-20 102.4 98 75.5
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 4.7e-20 102.1 104 71.2
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 4.7e-20 102.1 97 76.3
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 6.1e-20 101.7 101 72.3
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 6.1e-20 101.7 101 69.3
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 6.1e-20 101.7 108 73.1
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 1.0e-19 100.9 98 74.5
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 1.0e-19 100.9 98 74.5
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 1.0e-19 100.9 166 49.4
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 1.0e-19 100.9 97 74.2
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 1.4e-19 100.5 102 75.5
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 1.4e-19 100.5 100 72.0
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 1.8e-19 100.1 100 72.0
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.8e-19 100.1 101 63.4
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.8e-19 100.1 101 63.4
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.3e-19 99.8 100 64.0
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.0e-19 99.4 114 64.9
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 4.0e-19 99.0 97 74.2
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 5.2e-19 98.6 113 67.3
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 5.2e-19 98.6 114 57.9
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 5.2e-19 98.6 96 74.0
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 6.8e-19 98.2 114 64.0
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 1.2e-18 97.4 100 73.0
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 1.2e-18 97.4 176 49.4
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 2.0e-18 96.7 102 70.6
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 2.0e-18 96.7 182 48.9
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 2.6e-18 96.3 187 44.4
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 7.5e-18 94.7 86 80.2
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.3e-17 94.0 101 61.4
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 3.7e-17 92.4 109 71.6
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 4.9e-17 92.0 119 60.5
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 6.4e-17 91.7 179 46.4
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 6.4e-17 91.7 134 56.7
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 8.3e-17 91.3 106 71.7
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 1.1e-16 90.9 94 72.3
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.4e-16 90.5 86 72.1
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 1.8e-16 90.1 114 58.8
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 4.1e-16 89.0 97 67.0
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 5.4e-16 88.6 89 64.0
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 5.4e-16 88.6 89 64.0
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 5.4e-16 88.6 89 64.0
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 7.0e-16 88.2 57 73.7
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 9.2e-16 87.8 86 65.1
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 9.2e-16 87.8 86 65.1
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 9.2e-16 87.8 86 65.1
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 9.2e-16 87.8 86 65.1
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 1.2e-15 87.4 86 66.3
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 1.2e-15 87.4 105 55.2
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 3.5e-15 85.9 95 72.6
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 5.9e-15 85.1 86 65.1
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 5.9e-15 85.1 86 65.1
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 7.8e-15 84.7 98 63.3
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.0e-14 84.3 111 59.5
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 2.3e-14 83.2 98 63.3
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.0e-14 82.8 133 51.9
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 3.9e-14 82.4 96 63.5
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 8.6e-14 81.3 173 43.4
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 1.1e-13 80.9 87 63.2
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 1.1e-13 80.9 86 68.6
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 4.3e-13 79.0 92 63.0
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 7.3e-13 78.2 135 54.1
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 1.6e-12 77.0 98 61.2
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 2.8e-12 76.3 116 60.3
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 3.6e-12 75.9 96 50.0
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 2.3e-11 73.2 88 67.0
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.1e-11 72.8 64 76.6
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 6.8e-11 71.6 64 75.0
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.5e-10 70.5 64 75.0
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 2.0e-10 70.1 101 54.5
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 3.4e-10 69.3 64 76.6
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 3.4e-10 69.3 116 57.8
Potri.001G371500 Populus trichocarpa HOM05D004577 ORTHO05D005062 7.5e-10 68.2 174 39.1
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 9.8e-10 67.8 95 61.1
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.3e-09 67.4 91 57.1
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.9e-08 63.5 64 64.1
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 9.2e-08 61.2 63 69.8
AagrBONN_evm.TU.Sc2ySwM_228.3972 Anthoceros agrestis HOM05D004577 ORTHO05D005062 1.0e-06 57.8 94 54.3
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 1.0e-06 57.8 109 45.9
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 1.3e-06 57.4 86 51.2
FvH4_3g42261 Fragaria vesca HOM05D019050 ORTHO05D035443 3.0e-06 56.2 122 46.7
FAN16G1216 Fragaria x ananassa HOM05D019050 ORTHO05D035374 3.0e-06 56.2 122 47.5
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 6.6e-06 55.1 95 49.5


User provided reference genes

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