Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 5.6e-129 464.5 278 100.0
Haze_00106 Corylus avellana HOM05D004891 ORTHO05D005997 2.4e-79 299.7 288 60.8
CiPaw.05G258300 Carya illinoinensis HOM05D004891 ORTHO05D005997 7.6e-78 294.7 287 61.7
Cfa016358 Carpinus fangiana HOM05D004891 ORTHO05D005997 1.1e-76 290.8 288 59.7
PGR142G0227 Punica granatum HOM05D004891 ORTHO05D005997 1.1e-76 290.8 283 59.0
Potri.015G022900 Populus trichocarpa HOM05D004891 ORTHO05D005997 4.2e-76 288.9 287 59.9
Manes.14G018900 Manihot esculenta HOM05D004891 ORTHO05D005997 1.6e-75 287.0 285 60.0
QL09p011070 Quercus lobata HOM05D004891 ORTHO05D005997 4.6e-75 285.4 285 59.3
Duzib084G0775 Durio zibethinus HOM05D004891 ORTHO05D005997 7.9e-75 284.6 285 58.9
Hma1.2p1_0327F.1_g126710 Hydrangea macrophylla HOM05D004891 ORTHO05D005997 1.0e-74 284.3 290 61.0
Thecc.03G192100 Theobroma cacao HOM05D004891 ORTHO05D005997 5.1e-74 282.0 286 59.1
RcHm_v2.0_Chr1g0380031 Rosa chinensis HOM05D004891 ORTHO05D005997 1.5e-73 280.4 284 58.5
FAN01G2480 Fragaria x ananassa HOM05D004891 ORTHO05D005997 2.5e-73 279.6 292 62.3
COL.COLO4_35665 Corchorus olitorius HOM05D004891 ORTHO05D005997 3.3e-73 279.3 285 57.9
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 3.3e-73 279.3 287 58.5
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 4.3e-73 278.9 286 57.3
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 4.3e-73 278.9 286 57.3
Dinv28341 Davidia involucrata HOM05D004891 ORTHO05D005997 1.6e-72 276.9 289 56.7
Prupe.2G306500 Prunus persica HOM05D004891 ORTHO05D005997 1.6e-72 276.9 285 57.9
GSVIVG01028731001 Vitis vinifera HOM05D004891 ORTHO05D005997 3.7e-72 275.8 291 57.4
FvH4_7g30940 Fragaria vesca HOM05D004891 ORTHO05D005997 6.3e-72 275.0 290 60.0
FAN06G4508 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.8e-71 273.5 290 58.6
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 4.1e-71 272.3 293 57.0
CiPaw.06G007100 Carya illinoinensis HOM05D004891 ORTHO05D005997 4.1e-71 272.3 284 58.8
TAR375G0232 Trochodendron aralioides HOM05D004891 ORTHO05D005997 6.9e-71 271.6 290 57.6
Cpa.g.sc3.45 Carica papaya HOM05D004891 ORTHO05D005997 1.5e-70 270.4 286 56.3
FAN03G3090 Fragaria x ananassa HOM05D004891 ORTHO05D005997 2.0e-70 270.0 302 56.0
Potri.012G032200 Populus trichocarpa HOM05D004891 ORTHO05D005997 1.0e-69 267.7 286 58.0
Actinidia08623 Actinidia chinensis HOM05D004891 ORTHO05D005997 1.7e-69 266.9 290 55.9
MD01G1214600 Malus domestica HOM05D004891 ORTHO05D005997 2.9e-69 266.2 287 58.5
TWI23G0467 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 2.9e-69 266.2 285 56.1
Ciclev10005604m.g Citrus clementina HOM05D004891 ORTHO05D005997 3.8e-69 265.8 290 56.9
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 5.0e-69 265.4 285 55.4
Gohir.A12G252100 Gossypium hirsutum HOM05D004891 ORTHO05D005997 6.5e-69 265.0 285 55.4
Actinidia34190 Actinidia chinensis HOM05D004891 ORTHO05D005997 8.5e-69 264.6 285 55.8
Gorai.008G271100 Gossypium raimondii HOM05D004891 ORTHO05D005997 8.5e-69 264.6 285 54.7
Gohir.D12G253400 Gossypium hirsutum HOM05D004891 ORTHO05D005997 2.5e-68 263.1 285 54.4
FAN06G0473 Fragaria x ananassa HOM05D004891 ORTHO05D005997 4.2e-68 262.3 317 52.7
PSO063G3645 Papaver somniferum HOM05D004891 ORTHO05D005997 5.5e-68 261.9 288 56.6
PSO170G4664 Papaver somniferum HOM05D004891 ORTHO05D005997 5.5e-68 261.9 288 52.8
Lj1g0012174 Lotus japonicus HOM05D004891 ORTHO05D005997 9.4e-68 261.2 291 59.8
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 1.6e-67 260.4 288 54.5
TWI14G0964 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 2.7e-67 259.6 286 55.2
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 6.1e-67 258.5 284 54.2
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 7.9e-67 258.1 284 54.6
Nitab4.5_0000472g0010 Nicotiana tabacum HOM05D004891 ORTHO05D005997 7.9e-67 258.1 289 57.4
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 1.0e-66 257.7 286 55.2
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 1.4e-66 257.3 286 58.0
Nitab4.5_0000473g0100 Nicotiana tabacum HOM05D004891 ORTHO05D005997 1.4e-66 257.3 289 57.4
ClCG05G008660 Citrullus lanatus HOM05D004891 ORTHO05D005997 1.8e-66 256.9 285 53.7
Glyma.14G123700 Glycine max HOM05D004891 ORTHO05D005997 1.8e-66 256.9 288 52.8
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 3.9e-66 255.8 289 54.7
VMungo0647G1360 Vigna mungo HOM05D004891 ORTHO05D005997 1.1e-65 254.2 284 54.2
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 2.5e-65 253.1 294 53.1
Rhsim03G0198300 Rhododendron simsii HOM05D004891 ORTHO05D005997 3.3e-65 252.7 292 56.5
PGSC0003DMG400009098 Solanum tuberosum HOM05D004891 ORTHO05D005997 4.3e-65 252.3 289 56.4
CsaV3_3G021850 Cucumis sativus L. HOM05D004891 ORTHO05D005997 5.7e-65 251.9 285 56.5
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 7.4e-65 251.5 289 54.7
MELO3C006974.2 Cucumis melo HOM05D004891 ORTHO05D005997 9.7e-65 251.1 285 56.5
Cc02_g01930 Coffea canephora HOM05D004891 ORTHO05D005997 1.3e-64 250.8 298 53.4
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 3.7e-64 249.2 291 53.6
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 3.7e-64 249.2 287 53.7
MBI06_g22405_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D005997 4.8e-64 248.8 291 52.6
Sopen03g003400 Solanum pennellii HOM05D004891 ORTHO05D005997 8.2e-64 248.1 289 56.1
Thhalv10014380m.g Eutrema salsugineum HOM05D004891 ORTHO05D005997 1.1e-63 247.7 285 50.5
Manes.06G156500 Manihot esculenta HOM05D004891 ORTHO05D005997 1.4e-63 247.3 285 54.0
Sopen03g003460 Solanum pennellii HOM05D004891 ORTHO05D005997 2.4e-63 246.5 289 55.7
CAN.G108.22 Capsicum annuum HOM05D004891 ORTHO05D005997 1.2e-62 244.2 290 54.1
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 2.6e-62 243.0 241 57.3
Carub.0008s1346 Capsella rubella HOM05D004891 ORTHO05D005997 3.4e-62 242.7 287 51.6
SalBow2G0402 Salvia bowleyana HOM05D004891 ORTHO05D005997 3.4e-62 242.7 286 53.8
Oeu037109.1 Olea europaea HOM05D004891 ORTHO05D005997 5.9e-62 241.9 290 52.1
Aa31LG3G9250 Aethionema arabicum HOM05D004891 ORTHO05D005997 7.7e-62 241.5 284 50.4
Sabra12G0021600 Salix brachista HOM05D004891 ORTHO05D005997 1.0e-61 241.1 349 45.6
Sabra15G0017200 Salix brachista HOM05D004891 ORTHO05D005997 1.7e-61 240.4 353 46.7
Sp6g15430 Schrenkiella parvula HOM05D004891 ORTHO05D005997 8.5e-61 238.0 286 50.0
AT5G53280 Arabidopsis thaliana HOM05D004891 ORTHO05D005997 1.9e-60 236.9 285 48.8
AL8G27930 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 2.5e-60 236.5 285 49.1
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 3.2e-60 236.1 285 52.6
CARHR266320 Cardamine hirsuta HOM05D004891 ORTHO05D005997 1.2e-59 234.2 285 49.8
EL10Ac3g05352 Beta vulgaris HOM05D004891 ORTHO05D005997 2.1e-59 233.4 282 50.7
BcaB08g35688 Brassica carinata HOM05D004891 ORTHO05D005997 2.1e-59 233.4 285 48.4
Aqoxy5G04112 Aquilegia oxysepala HOM05D004891 ORTHO05D005997 2.7e-59 233.0 289 57.4
MSTRG.8493 Avicennia marina HOM05D004891 ORTHO05D005997 4.7e-59 232.3 290 52.1
Lj3A911G21 Lonicera japonica HOM05D004891 ORTHO05D005997 4.7e-59 232.3 331 47.4
ECA238G3691 Erigeron canadensis HOM05D004891 ORTHO05D005997 6.1e-59 231.9 290 50.3
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 1.0e-58 231.1 285 52.3
BcaB01g04239 Brassica carinata HOM05D004891 ORTHO05D005997 1.8e-58 230.3 289 51.6
Lsat_1_v5_gn_2_134260 Lactuca sativa HOM05D004891 ORTHO05D005997 2.3e-58 229.9 286 51.4
Sed0021890 Sechium edule HOM05D004891 ORTHO05D005997 3.9e-58 229.2 283 48.4
AUR62031485 Chenopodium quinoa HOM05D004891 ORTHO05D005997 3.3e-57 226.1 289 49.1
Oeu024464.1 Olea europaea HOM05D004891 ORTHO05D005997 3.3e-57 226.1 290 50.7
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 5.7e-57 225.3 288 51.7
Hund11687 Selenicereus undatus HOM05D004891 ORTHO05D005997 5.7e-57 225.3 282 50.4
Actinidia03156 Actinidia chinensis HOM05D004891 ORTHO05D005997 7.4e-57 224.9 289 57.1
Hund11688 Selenicereus undatus HOM05D004891 ORTHO05D005997 2.8e-56 223.0 285 50.2
C03p17830 Brassica napus HOM05D004891 ORTHO05D005997 3.7e-56 222.6 283 48.8
BolC3t14190H Brassica oleracea HOM05D004891 ORTHO05D005997 3.7e-56 222.6 283 48.8
A03p15250 Brassica napus HOM05D004891 ORTHO05D005997 2.6e-54 216.5 285 48.1
BraA03t10818Z Brassica rapa HOM05D004891 ORTHO05D005997 5.9e-54 215.3 285 48.4
A10p10800 Brassica napus HOM05D004891 ORTHO05D005997 1.0e-53 214.5 286 47.9
CDE10G0607 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 2.9e-53 213.0 292 48.6
BcaC01g06235 Brassica carinata HOM05D004891 ORTHO05D005997 1.1e-52 211.1 252 49.2
BraA10t43162Z Brassica rapa HOM05D004891 ORTHO05D005997 1.4e-52 210.7 286 47.6
BcaC04g20477 Brassica carinata HOM05D004891 ORTHO05D005997 2.5e-52 209.9 284 47.2
C09p43070 Brassica napus HOM05D004891 ORTHO05D005997 2.5e-52 209.9 284 47.2
BolC9t57178H Brassica oleracea HOM05D004891 ORTHO05D005997 2.5e-52 209.9 284 47.2
HPP92_024018 Vanilla planifolia HOM05D004891 ORTHO05D005997 4.2e-52 209.1 288 46.5
Hund04825 Selenicereus undatus HOM05D004891 ORTHO05D005997 1.6e-51 207.2 283 48.4
Sed0007260 Sechium edule HOM05D004891 ORTHO05D005997 2.7e-51 206.5 283 45.6
Ah.07g206050 Amaranthus hybridus HOM05D004891 ORTHO05D005997 1.8e-50 203.8 282 45.7
Actinidia34193 Actinidia chinensis HOM05D004891 ORTHO05D005997 3.0e-50 203.0 284 46.5
CDE10G1089 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 1.5e-49 200.7 290 46.6
Dinv35303 Davidia involucrata HOM05D004891 ORTHO05D005997 2.6e-49 199.9 190 61.1
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 3.7e-48 196.1 284 47.5
TAR374G1584 Trochodendron aralioides HOM05D004891 ORTHO05D005997 9.1e-47 191.4 171 64.9
ATR1093G054 Amborella trichopoda HOM05D004891 ORTHO05D005997 1.2e-46 191.0 299 43.5
Lj1C1012T12 Lonicera japonica HOM05D004891 ORTHO05D005997 1.3e-45 187.6 283 47.0
vmacro06579 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 3.6e-43 179.5 472 33.5
Zm00001eb237900 Zea mays HOM05D004891 ORTHO05D005997 3.7e-40 169.5 229 49.8
vmacro23247 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 1.4e-39 167.5 503 31.4
CSS0025805 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 4.1e-39 166.0 174 59.8
Peaxi162Scf00904g00326 Petunia axillaris HOM05D004891 ORTHO05D005997 1.7e-37 160.6 146 63.7
Solyc03g007500.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 3.8e-37 159.5 145 64.1
Solyc03g007440.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 2.5e-36 156.8 145 63.4
unitig_736.g22889 Utricularia gibba HOM05D004891 ORTHO05D005997 5.5e-36 155.6 284 41.9
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 8.0e-35 151.8 214 48.1
Os01g0224200 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 1.8e-34 150.6 292 38.0
MSTRG.23354 Avicennia marina HOM05D004891 ORTHO05D005997 4.5e-30 136.0 175 49.7
Atru.chr1.279 Acer truncatum HOM05D004891 ORTHO05D005997 5.9e-30 135.6 130 59.2
AUR62021048 Chenopodium quinoa HOM05D004891 ORTHO05D005997 5.9e-30 135.6 175 48.6
Zm00001eb203870 Zea mays HOM05D004891 ORTHO05D005997 1.0e-29 134.8 281 34.9
Os06g0506000 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 5.0e-29 132.5 231 39.4
DCAR_014529 Daucus carota HOM05D004891 ORTHO05D005997 3.6e-27 126.3 176 47.2
Zm00001eb338960 Zea mays HOM05D004891 ORTHO05D005997 8.9e-26 121.7 289 37.7
Thecc.01G303500 Theobroma cacao HOM05D004891 ORTHO05D005997 6.3e-24 115.5 86 72.1
Oeu036883.1 Olea europaea HOM05D004891 ORTHO05D005997 2.0e-22 110.5 170 44.7
MSTRG.62 Avicennia marina HOM05D004891 ORTHO05D005997 8.6e-21 105.1 115 55.7
CDE02G0860 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 9.5e-20 101.7 284 30.3
AL8G27980 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 8.0e-19 98.6 146 41.1
Oeu036884.1 Olea europaea HOM05D004891 ORTHO05D005997 2.6e-17 93.6 111 52.3
TAR629G2914 Trochodendron aralioides HOM05D004891 ORTHO05D005997 1.3e-16 91.3 176 39.2
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 2.7e-14 83.6 170 35.3
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.6e-14 82.8 160 33.8
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 1.0e-13 81.6 161 36.6
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 3.3e-12 76.6 296 29.1
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.3e-12 76.6 160 34.4
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 9.5e-12 75.1 71 54.9
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 9.5e-12 75.1 101 43.6
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.4e-10 71.2 82 45.1
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.8e-10 70.9 91 47.3
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.1e-10 70.1 71 50.7
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 3.1e-10 70.1 85 45.9
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 8.9e-10 68.6 167 30.5
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 1.5e-09 67.8 76 47.4
Sabra10G0105200 Salix brachista HOM05D004891 ORTHO05D005997 5.8e-09 65.9 53 66.0
Sabra15G0071500 Salix brachista HOM05D004891 ORTHO05D005997 5.8e-09 65.9 53 66.0
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 2.2e-08 63.9 73 47.9
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 2.2e-08 63.9 136 36.8
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 4.9e-08 62.8 78 47.4
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 4.9e-08 62.8 163 31.9
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 8.3e-08 62.0 78 44.9
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.4e-07 61.2 72 44.4
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 2.4e-07 60.5 80 45.0
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 2.4e-07 60.5 191 29.8
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 4.1e-07 59.7 128 36.7
Sabra12G0063200 Salix brachista HOM05D004891 ORTHO05D005997 4.1e-07 59.7 80 48.8
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 7.1e-07 58.9 130 34.6
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 7.1e-07 58.9 92 39.1
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 9.2e-07 58.5 164 31.7
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 9.2e-07 58.5 74 44.6
Zm00001eb192840 Zea mays HOM05D004891 ORTHO05D005997 1.2e-06 58.2 115 37.4
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.6e-06 57.8 129 37.2
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.1e-06 57.4 92 37.0
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 2.7e-06 57.0 79 41.8
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 2.7e-06 57.0 125 35.2
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 2.7e-06 57.0 74 45.9
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 3.5e-06 56.6 135 33.3
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 4.6e-06 56.2 75 44.0
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 4.6e-06 56.2 79 43.0
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 4.6e-06 56.2 125 35.2
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 6.0e-06 55.8 79 39.2
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 7.8e-06 55.5 74 40.5
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 7.8e-06 55.5 79 43.0
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 7.8e-06 55.5 167 31.1
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 7.8e-06 55.5 79 43.0
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 7.8e-06 55.5 72 43.1
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 7.8e-06 55.5 82 37.8


User provided reference genes

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