Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 9.9e-311 1069.3 555 100.0
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 1.4e-184 650.2 523 64.6
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 3.3e-181 639.0 527 62.8
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 5.4e-176 621.7 529 63.7
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 3.5e-175 619.0 526 60.6
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 6.7e-174 614.8 536 60.6
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 2.5e-173 612.8 553 60.9
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 8.1e-172 607.8 530 60.2
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 1.8e-171 606.7 548 58.9
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 2.9e-169 599.4 526 60.8
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 1.4e-168 597.0 526 60.6
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 4.6e-167 592.0 530 59.2
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 1.8e-163 580.1 533 57.6
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 6.9e-163 578.2 525 58.7
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 1.5e-162 577.0 527 60.0
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 2.6e-162 576.2 524 57.8
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 7.6e-162 574.7 527 59.6
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 1.3e-161 573.9 519 58.4
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 1.7e-161 573.5 531 58.4
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 6.5e-161 571.6 528 57.4
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 8.4e-161 571.2 527 59.8
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 1.0e-158 564.3 509 56.4
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.0e-158 564.3 544 56.1
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.8e-158 563.5 559 52.8
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 6.3e-156 555.1 537 56.1
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 1.8e-155 553.5 528 56.8
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 1.1e-152 544.3 524 55.3
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 1.1e-152 544.3 532 53.8
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 7.2e-152 541.6 526 54.4
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 9.4e-152 541.2 532 53.6
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 3.9e-150 535.8 526 54.8
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 1.5e-149 533.9 523 54.9
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 1.5e-149 533.9 524 54.0
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 1.9e-149 533.5 530 54.7
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 2.5e-149 533.1 529 53.5
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 1.3e-148 530.8 528 55.9
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 1.7e-148 530.4 524 53.8
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 8.2e-148 528.1 525 51.0
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 1.8e-147 526.9 532 55.1
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 2.4e-147 526.6 524 54.0
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 7.7e-146 521.5 527 52.6
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 3.6e-143 512.7 527 52.0
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 6.1e-143 511.9 552 52.7
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 2.3e-142 510.0 526 52.1
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 5.1e-142 508.8 531 51.2
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 6.7e-142 508.4 526 52.3
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 2.6e-141 506.5 536 52.2
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 3.3e-141 506.1 530 52.8
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 4.4e-141 505.8 516 54.1
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.2e-140 503.4 540 51.7
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.2e-140 503.4 540 51.3
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.7e-140 502.7 542 51.1
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.7e-140 502.7 540 51.3
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 7.0e-139 498.4 537 51.2
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 9.1e-139 498.0 543 51.4
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 2.0e-138 496.9 606 46.7
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.0e-138 496.9 538 51.3
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 5.9e-138 495.4 534 50.4
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 5.9e-138 495.4 498 53.0
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 1.7e-137 493.8 523 50.3
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 3.8e-137 492.7 529 50.7
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 8.5e-137 491.5 529 52.2
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 3.2e-136 489.6 535 50.1
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 5.5e-136 488.8 542 50.9
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 1.2e-135 487.6 537 48.4
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 2.1e-135 486.9 533 49.5
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.7e-135 486.5 557 49.7
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 3.9e-134 482.6 527 51.6
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 6.7e-134 481.9 437 58.4
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 6.7e-134 481.9 533 49.3
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 6.7e-134 481.9 524 51.1
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 8.8e-134 481.5 531 49.5
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 3.7e-132 476.1 532 48.5
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 4.8e-132 475.7 533 48.0
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.8e-131 473.8 532 47.9
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 3.1e-131 473.0 524 51.0
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 4.1e-131 472.6 534 47.2
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.6e-130 470.7 550 48.4
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 3.5e-130 469.5 532 48.3
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 1.0e-129 468.0 529 49.7
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 1.3e-129 467.6 523 48.6
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 4.2e-128 462.6 533 47.8
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 2.7e-127 459.9 526 49.6
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 8.8e-126 454.9 535 46.5
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 2.0e-125 453.8 535 46.9
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 2.0e-125 453.8 535 46.9
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 2.0e-125 453.8 530 46.2
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 2.0e-125 453.8 532 47.0
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 4.4e-125 452.6 535 46.7
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 3.7e-124 449.5 528 49.2
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 6.3e-124 448.7 531 46.5
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 1.6e-122 444.1 534 46.6
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 2.0e-122 443.7 525 48.8
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 1.3e-121 441.0 534 46.3
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 1.7e-121 440.7 525 47.8
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 3.2e-120 436.4 508 48.2
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.2e-117 427.9 549 47.9
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 2.0e-117 427.2 525 45.5
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 1.7e-116 424.1 545 44.6
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 2.8e-116 423.3 675 41.6
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.2e-114 417.9 525 46.3
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 1.6e-114 417.5 389 57.6
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 3.5e-114 416.4 412 54.9
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 1.0e-113 414.8 531 47.3
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 5.0e-113 412.5 429 52.7
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 1.5e-112 411.0 529 44.6
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 2.2e-108 397.1 387 54.3
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 1.2e-101 374.8 517 42.6
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 5.8e-101 372.5 539 40.1
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 7.5e-101 372.1 571 41.7
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 9.5e-96 355.1 471 43.9
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 2.1e-95 354.0 332 55.7
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 1.7e-92 344.4 561 38.1
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 8.3e-92 342.0 561 38.1
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 5.1e-89 332.8 554 36.6
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 2.9e-84 317.0 531 39.7
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 2.4e-83 313.9 529 38.4
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 4.1e-83 313.2 398 46.5
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 3.5e-82 310.1 280 58.2
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 6.0e-82 309.3 344 50.0
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 8.7e-73 278.9 216 65.7
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.4e-70 271.6 347 45.8
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 3.1e-70 270.4 274 52.9
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 2.3e-65 254.2 267 55.4
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 3.1e-62 243.8 441 36.5
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 4.0e-62 243.4 487 36.1
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 6.9e-62 242.7 273 49.8
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.0e-57 228.8 437 35.7
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 1.1e-54 218.8 374 39.0
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 2.5e-43 181.0 140 60.7
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 4.6e-42 176.8 329 36.8
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 7.9e-42 176.0 166 51.8
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 2.9e-36 157.5 151 49.7
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 6.5e-36 156.4 154 50.0
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 2.5e-35 154.5 154 50.0
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 1.6e-34 151.8 211 40.8
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 2.3e-33 147.9 149 49.0
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 1.7e-31 141.7 148 49.3
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 6.9e-30 136.3 246 35.8
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 5.9e-29 133.3 659 24.3
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 3.8e-28 130.6 185 37.8
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 2.5e-27 127.9 532 23.3
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 7.2e-27 126.3 172 44.2
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 4.4e-24 117.1 134 45.5
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 5.0e-20 103.6 185 31.4
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.2e-12 78.2 271 25.8
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 1.4e-09 68.9 91 46.2
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 5.2e-09 67.0 174 31.0
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 1.4e-06 58.9 98 33.7


User provided reference genes

Program Settings