Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 7.2e-157 557.4 318 100.0
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 1.5e-85 320.5 249 73.5
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 6.2e-84 315.1 265 68.3
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 4.0e-83 312.4 257 72.0
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.2e-82 310.8 257 70.0
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 3.4e-82 309.3 258 70.2
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 1.0e-81 307.8 257 70.8
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 1.3e-81 307.4 257 70.4
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 1.7e-81 307.0 260 71.2
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 8.4e-81 304.7 253 68.8
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 1.4e-80 303.9 257 69.6
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 3.2e-80 302.8 262 68.3
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 7.9e-79 298.1 252 69.8
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.8e-78 297.0 257 68.1
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 3.0e-78 296.2 257 68.1
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 3.9e-78 295.8 262 66.8
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 8.7e-78 294.7 257 69.3
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 3.3e-77 292.7 254 67.7
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 3.3e-77 292.7 252 68.3
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 4.3e-77 292.4 257 68.1
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 8.2e-76 288.1 257 68.1
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 1.1e-75 287.7 256 68.0
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 1.1e-75 287.7 253 68.0
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.1e-75 286.2 257 65.8
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 4.1e-75 285.8 257 65.8
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 9.0e-75 284.6 257 65.8
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 4.5e-74 282.3 254 66.9
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 4.5e-74 282.3 254 65.0
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 5.9e-74 282.0 253 66.4
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 7.7e-74 281.6 257 65.4
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 7.7e-74 281.6 287 61.7
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 1.7e-73 280.4 252 67.9
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.7e-73 280.4 292 59.6
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 2.2e-73 280.0 252 67.9
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 2.9e-73 279.6 260 65.0
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 6.5e-73 278.5 253 64.8
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 8.5e-73 278.1 260 66.5
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 1.1e-72 277.7 258 65.1
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 2.5e-72 276.6 254 66.5
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 2.5e-72 276.6 260 62.7
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 3.2e-72 276.2 257 63.4
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 3.2e-72 276.2 262 63.4
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 5.5e-72 275.4 268 63.1
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 9.4e-72 274.6 254 66.9
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 9.4e-72 274.6 259 64.5
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 1.6e-71 273.9 263 63.9
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.6e-71 273.9 251 65.7
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 2.1e-71 273.5 259 65.3
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.1e-71 273.5 259 64.1
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 2.7e-71 273.1 262 62.6
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 3.6e-71 272.7 253 63.6
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 1.0e-70 271.2 251 66.1
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.0e-70 271.2 253 65.6
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 1.4e-70 270.8 249 66.3
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 3.0e-70 269.6 251 65.7
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.0e-70 269.6 259 63.7
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 3.9e-70 269.2 255 61.2
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 5.1e-70 268.9 264 61.7
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 6.7e-70 268.5 257 64.2
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 1.1e-69 267.7 253 65.6
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 1.5e-69 267.3 253 63.2
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 1.5e-69 267.3 263 61.2
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 2.0e-69 266.9 252 64.3
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 2.0e-69 266.9 253 63.6
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 4.3e-69 265.8 253 64.0
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 5.7e-69 265.4 259 62.5
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 5.7e-69 265.4 244 62.7
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 1.3e-68 264.2 247 63.6
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 1.3e-68 264.2 252 63.5
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 3.7e-68 262.7 243 65.0
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 8.2e-68 261.5 261 64.0
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 8.2e-68 261.5 259 62.2
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 2.4e-67 260.0 255 63.5
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 2.4e-67 260.0 261 63.6
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 3.1e-67 259.6 218 69.3
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 6.9e-67 258.5 244 63.9
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 9.1e-67 258.1 246 63.0
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 1.5e-66 257.3 255 62.7
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 1.5e-66 257.3 247 62.8
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 3.4e-66 256.1 246 63.8
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 4.5e-66 255.8 247 61.5
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 1.3e-65 254.2 241 62.2
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 2.2e-65 253.4 247 63.2
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 2.9e-65 253.1 162 85.2
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 5.0e-65 252.3 258 61.2
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 6.5e-65 251.9 243 62.1
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 6.5e-65 251.9 229 67.7
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 1.4e-64 250.8 253 60.5
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 1.9e-64 250.4 250 63.6
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.9e-64 250.4 251 62.9
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 3.2e-64 249.6 298 55.7
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 7.2e-64 248.4 250 62.0
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 1.2e-63 247.7 249 63.1
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 1.6e-63 247.3 252 62.3
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 2.1e-63 246.9 252 61.9
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 7.9e-63 245.0 257 61.5
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 2.3e-62 243.4 260 59.6
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 8.8e-62 241.5 251 59.8
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 1.5e-61 240.7 247 61.1
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.5e-61 240.7 161 80.7
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 1.5e-61 240.7 246 61.8
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 7.4e-61 238.4 153 85.6
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 2.8e-60 236.5 247 60.3
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 2.8e-60 236.5 250 60.0
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 1.1e-59 234.6 255 56.5
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 1.4e-59 234.2 256 59.0
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 4.1e-59 232.6 261 58.6
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 4.1e-59 232.6 255 56.1
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 9.1e-59 231.5 311 50.8
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 2.6e-58 229.9 373 45.0
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 8.8e-54 214.9 224 60.7
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 9.7e-53 211.5 193 68.4
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 6.3e-52 208.8 261 53.3
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 1.4e-51 207.6 260 51.9
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 1.1e-48 198.0 217 59.4
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 5.2e-46 189.1 284 45.4
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 1.1e-43 181.4 247 47.4
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 1.6e-42 177.6 220 55.0
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 5.9e-42 175.6 247 49.8
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 2.0e-37 160.6 195 55.4
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 7.5e-37 158.7 102 84.3
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 1.3e-36 157.9 271 47.2
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 6.3e-36 155.6 279 40.9
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 7.0e-35 152.1 99 81.8
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 4.5e-34 149.4 181 55.2
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 1.0e-33 148.3 137 62.8
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 2.9e-33 146.7 175 56.0
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 1.5e-32 144.4 172 53.5
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 2.6e-29 133.7 207 48.3
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 1.3e-28 131.3 178 52.2
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 4.4e-21 106.3 105 61.0
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 2.4e-19 100.5 224 43.3
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 2.4e-19 100.5 143 51.7
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 5.4e-19 99.4 126 44.4
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 7.0e-19 99.0 65 80.0
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 4.3e-16 89.7 65 72.3
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 6.8e-14 82.4 56 78.6
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 3.7e-12 76.6 64 64.1
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.1e-11 75.1 54 70.4
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.2e-10 71.6 40 82.5
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 4.6e-10 69.7 84 50.0
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 3.0e-09 67.0 99 47.5
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 3.9e-09 66.6 130 41.5
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 1.9e-08 64.3 170 35.9


User provided reference genes

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