Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00115 Eucalyptus grandis HOM05D004409 ORTHO05D005292 1.3e-63 246.1 118 100.0
Thecc.03G144700 Theobroma cacao HOM05D004409 ORTHO05D005292 5.6e-22 107.8 115 48.7
Atru.chr6.1971 Acer truncatum HOM05D004409 ORTHO05D005292 7.3e-22 107.5 116 49.1
Dinv34530 Davidia involucrata HOM05D004409 ORTHO05D005292 9.6e-22 107.1 115 51.3
GSVIVG01013815001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.3e-21 106.7 89 58.4
Actinidia01026 Actinidia chinensis HOM05D004409 ORTHO05D005292 4.8e-21 104.8 113 50.4
MD07G1239700 Malus domestica HOM05D004409 ORTHO05D005292 6.2e-21 104.4 119 45.4
FvH4_7g26400 Fragaria vesca HOM05D004409 ORTHO05D005292 3.1e-20 102.1 115 47.0
MD07G1239800 Malus domestica HOM05D004409 ORTHO05D005292 3.1e-20 102.1 119 44.5
TWI39G0193 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 5.3e-20 101.3 115 47.8
FAN10G3781 Fragaria x ananassa HOM05D004409 ORTHO05D005292 6.9e-20 100.9 115 45.2
CANSAT56G2887 Cannabis sativa HOM05D004409 ORTHO05D005292 1.2e-19 100.1 107 48.6
Eucgr.K00114 Eucalyptus grandis HOM05D004409 ORTHO05D005292 1.2e-19 100.1 88 54.5
RcHm_v2.0_Chr1g0372951 Rosa chinensis HOM05D004409 ORTHO05D005292 1.5e-19 99.8 114 46.5
Thecc.03G144800 Theobroma cacao HOM05D004409 ORTHO05D005292 1.5e-19 99.8 115 49.6
TWI39G0310 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.5e-19 99.8 115 47.0
TWI39G0462 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.5e-19 99.8 115 46.1
TAR375G0026 Trochodendron aralioides HOM05D004409 ORTHO05D005292 2.0e-19 99.4 105 49.5
GSVIVG01013816001 Vitis vinifera HOM05D004409 ORTHO05D005292 4.5e-19 98.2 89 56.2
PGR142G3629 Punica granatum HOM05D004409 ORTHO05D005292 5.8e-19 97.8 107 50.5
RcHm_v2.0_Chr1g0328171 Rosa chinensis HOM05D004409 ORTHO05D005292 5.8e-19 97.8 108 46.3
GSVIVG01013825001 Vitis vinifera HOM05D004409 ORTHO05D005292 9.9e-19 97.1 119 46.2
Thecc.03G144900 Theobroma cacao HOM05D004409 ORTHO05D005292 1.3e-18 96.7 110 45.5
Hma1.2p1_1014F.1_g247850 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 2.2e-18 95.9 117 47.9
GSVIVG01013894001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.9e-18 95.5 89 52.8
GSVIVG01024506001 Vitis vinifera HOM05D004409 ORTHO05D005292 4.9e-18 94.7 89 53.9
Oeu056339.1 Olea europaea HOM05D004409 ORTHO05D005292 6.4e-18 94.4 108 46.3
RcHm_v2.0_Chr1g0328141 Rosa chinensis HOM05D004409 ORTHO05D005292 6.4e-18 94.4 86 54.7
TAR375G0484 Trochodendron aralioides HOM05D004409 ORTHO05D005292 6.4e-18 94.4 115 45.2
RcHm_v2.0_Chr1g0372991 Rosa chinensis HOM05D004409 ORTHO05D005292 8.4e-18 94.0 86 54.7
FAN01G0604 Fragaria x ananassa HOM05D004409 ORTHO05D005292 1.1e-17 93.6 106 47.2
Sabra03G0054600 Salix brachista HOM05D004409 ORTHO05D005292 1.1e-17 93.6 106 49.1
COL.COLO4_37301 Corchorus olitorius HOM05D004409 ORTHO05D005292 1.4e-17 93.2 115 47.8
Duzib205G0410 Durio zibethinus HOM05D004409 ORTHO05D005292 1.4e-17 93.2 114 44.7
Hma1.2p1_1014F.1_g247840 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.4e-17 93.2 117 45.3
GSVIVG01004835001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.4e-17 93.2 106 46.2
FvH4_7g26430 Fragaria vesca HOM05D004409 ORTHO05D005292 1.9e-17 92.8 89 52.8
Potri.003G084000 Populus trichocarpa HOM05D004409 ORTHO05D005292 2.4e-17 92.4 106 50.0
COL.COLO4_37302 Corchorus olitorius HOM05D004409 ORTHO05D005292 4.2e-17 91.7 116 41.4
Dinv28881 Davidia involucrata HOM05D004409 ORTHO05D005292 4.2e-17 91.7 109 47.7
TAR375G0498 Trochodendron aralioides HOM05D004409 ORTHO05D005292 4.2e-17 91.7 111 45.0
TWI60G0543 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 5.4e-17 91.3 107 49.5
Thecc.03G239100 Theobroma cacao HOM05D004409 ORTHO05D005292 7.1e-17 90.9 107 50.5
Gohir.D12G214900 Gossypium hirsutum HOM05D004409 ORTHO05D005292 9.3e-17 90.5 106 49.1
Prupe.7G057100 Prunus persica HOM05D004409 ORTHO05D005292 9.3e-17 90.5 122 40.2
Oeu006074.1 Olea europaea HOM05D004409 ORTHO05D005292 1.2e-16 90.1 102 45.1
PGSC0003DMG400026212 Solanum tuberosum HOM05D004409 ORTHO05D005292 1.2e-16 90.1 108 45.4
TWI39G0819 Tripterygium wilfordii HOM05D004409 ORTHO05D005292 1.2e-16 90.1 113 43.4
Atru.chr9.1197 Acer truncatum HOM05D004409 ORTHO05D005292 1.6e-16 89.7 112 45.5
Gohir.A12G212400 Gossypium hirsutum HOM05D004409 ORTHO05D005292 1.6e-16 89.7 106 48.1
Gorai.008G230500 Gossypium raimondii HOM05D004409 ORTHO05D005292 1.6e-16 89.7 106 48.1
Actinidia31492 Actinidia chinensis HOM05D004409 ORTHO05D005292 2.1e-16 89.4 107 51.4
Cc06_g12260 Coffea canephora HOM05D004409 ORTHO05D005292 2.1e-16 89.4 115 42.6
GSVIVG01004822001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.1e-16 89.4 102 49.0
GSVIVG01004827001 Vitis vinifera HOM05D004409 ORTHO05D005292 2.1e-16 89.4 102 49.0
FAN03G2468 Fragaria x ananassa HOM05D004409 ORTHO05D005292 3.5e-16 88.6 89 49.4
Aqoxy6G00065 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 4.6e-16 88.2 89 52.8
Duzib205G0528 Durio zibethinus HOM05D004409 ORTHO05D005292 4.6e-16 88.2 107 45.8
FAN10G4140 Fragaria x ananassa HOM05D004409 ORTHO05D005292 4.6e-16 88.2 89 51.7
GSVIVG01024502001 Vitis vinifera HOM05D004409 ORTHO05D005292 4.6e-16 88.2 89 51.7
Cpa.g.sc13.213 Carica papaya HOM05D004409 ORTHO05D005292 6.0e-16 87.8 113 40.7
Oeu019420.1 Olea europaea HOM05D004409 ORTHO05D005292 6.0e-16 87.8 108 48.1
ECA240G1407 Erigeron canadensis HOM05D004409 ORTHO05D005292 7.9e-16 87.4 89 56.2
MELO3C014170.2 Cucumis melo HOM05D004409 ORTHO05D005292 1.0e-15 87.0 110 45.5
Migut.H01907 Erythranthe guttata HOM05D004409 ORTHO05D005292 1.0e-15 87.0 111 38.7
CsaV3_3G004710 Cucumis sativus L. HOM05D004409 ORTHO05D005292 1.3e-15 86.7 109 44.0
TAR636G0884 Trochodendron aralioides HOM05D004409 ORTHO05D005292 1.3e-15 86.7 120 43.3
Ciclev10022946m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.8e-15 86.3 100 49.0
DCAR_003519 Daucus carota HOM05D004409 ORTHO05D005292 1.8e-15 86.3 87 51.7
MD07G1239500 Malus domestica HOM05D004409 ORTHO05D005292 2.3e-15 85.9 88 48.9
Migut.H01906 Erythranthe guttata HOM05D004409 ORTHO05D005292 3.9e-15 85.1 105 38.1
Actinidia10866 Actinidia chinensis HOM05D004409 ORTHO05D005292 5.1e-15 84.7 107 46.7
FAN06G5092 Fragaria x ananassa HOM05D004409 ORTHO05D005292 5.1e-15 84.7 85 51.8
EL10Ac1g00121 Beta vulgaris HOM05D004409 ORTHO05D005292 6.7e-15 84.3 117 43.6
DCAR_005587 Daucus carota HOM05D004409 ORTHO05D005292 8.7e-15 84.0 105 40.0
Aqoxy3G02644 Aquilegia oxysepala HOM05D004409 ORTHO05D005292 1.1e-14 83.6 107 43.9
CANSAT56G0658 Cannabis sativa HOM05D004409 ORTHO05D005292 1.5e-14 83.2 103 47.6
Ciclev10030379m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.5e-14 83.2 87 49.4
Atru.chr9.1196 Acer truncatum HOM05D004409 ORTHO05D005292 1.9e-14 82.8 89 47.2
MSTRG.27238 Avicennia marina HOM05D004409 ORTHO05D005292 1.9e-14 82.8 88 46.6
CSS0044628 Camellia sinensis var. sinensis HOM05D004409 ORTHO05D005292 1.9e-14 82.8 89 50.6
Manes.01G089900 Manihot esculenta HOM05D004409 ORTHO05D005292 1.9e-14 82.8 124 41.9
Nitab4.5_0000185g0190 Nicotiana tabacum HOM05D004409 ORTHO05D005292 1.9e-14 82.8 113 43.4
FAN17G1151 Fragaria x ananassa HOM05D004409 ORTHO05D005292 2.5e-14 82.4 90 47.8
CANSAT56G4079 Cannabis sativa HOM05D004409 ORTHO05D005292 3.3e-14 82.0 90 50.0
COL.COLO4_06685 Corchorus olitorius HOM05D004409 ORTHO05D005292 3.3e-14 82.0 91 49.5
COL.COLO4_32251 Corchorus olitorius HOM05D004409 ORTHO05D005292 4.3e-14 81.6 112 42.9
THA.LOC104809923 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 4.3e-14 81.6 101 43.6
CsaV3_3G002240 Cucumis sativus L. HOM05D004409 ORTHO05D005292 5.6e-14 81.3 109 39.4
MELO3C013895.2 Cucumis melo HOM05D004409 ORTHO05D005292 7.4e-14 80.9 102 42.2
GSVIVG01004836001 Vitis vinifera HOM05D004409 ORTHO05D005292 7.4e-14 80.9 116 39.7
CAN.G572.17 Capsicum annuum HOM05D004409 ORTHO05D005292 9.6e-14 80.5 106 44.3
Ciclev10022894m.g Citrus clementina HOM05D004409 ORTHO05D005292 9.6e-14 80.5 87 48.3
Duzib068G1042 Durio zibethinus HOM05D004409 ORTHO05D005292 9.6e-14 80.5 107 41.1
Peaxi162Scf00102g00085 Petunia axillaris HOM05D004409 ORTHO05D005292 9.6e-14 80.5 105 46.7
CANSAT56G2756 Cannabis sativa HOM05D004409 ORTHO05D005292 1.3e-13 80.1 90 48.9
Hund27103 Selenicereus undatus HOM05D004409 ORTHO05D005292 1.6e-13 79.7 120 37.5
CANSAT21G0737 Cannabis sativa HOM05D004409 ORTHO05D005292 2.1e-13 79.3 109 44.0
Dinv25140 Davidia involucrata HOM05D004409 ORTHO05D005292 2.1e-13 79.3 89 48.3
SGA_v2.0_scaffold91G28102 Striga asiatica HOM05D004409 ORTHO05D005292 2.1e-13 79.3 83 48.2
Thecc.07G180600 Theobroma cacao HOM05D004409 ORTHO05D005292 2.1e-13 79.3 111 42.3
TAR375G0880 Trochodendron aralioides HOM05D004409 ORTHO05D005292 2.1e-13 79.3 97 44.3
CANSAT21G0033 Cannabis sativa HOM05D004409 ORTHO05D005292 2.8e-13 79.0 115 42.6
HanXRQChr13g0419061 Helianthus annuus HOM05D004409 ORTHO05D005292 3.7e-13 78.6 103 42.7
GSVIVG01004832001 Vitis vinifera HOM05D004409 ORTHO05D005292 3.7e-13 78.6 89 46.1
DCAR_008327 Daucus carota HOM05D004409 ORTHO05D005292 4.8e-13 78.2 87 47.1
Lsat_1_v5_gn_6_94501 Lactuca sativa HOM05D004409 ORTHO05D005292 4.8e-13 78.2 105 44.8
Prupe.5G054600 Prunus persica HOM05D004409 ORTHO05D005292 4.8e-13 78.2 122 40.2
QL12p008592 Quercus lobata HOM05D004409 ORTHO05D005292 4.8e-13 78.2 111 42.3
Dinv28880 Davidia involucrata HOM05D001887 ORTHO05D003756 8.1e-13 77.4 103 39.8
Peaxi162Scf00391g00715 Petunia axillaris HOM05D004409 ORTHO05D005292 8.1e-13 77.4 88 45.5
Ciclev10033339m.g Citrus clementina HOM05D004409 ORTHO05D005292 1.4e-12 76.6 88 46.6
COL.COLO4_21695 Corchorus olitorius HOM05D004409 ORTHO05D005292 2.4e-12 75.9 89 44.9
Gohir.D13G124300 Gossypium hirsutum HOM05D004409 ORTHO05D005292 2.4e-12 75.9 104 41.3
HanXRQChr03g0089681 Helianthus annuus HOM05D004409 ORTHO05D005292 2.4e-12 75.9 103 42.7
HanXRQChr03g0089691 Helianthus annuus HOM05D004409 ORTHO05D005292 2.4e-12 75.9 111 38.7
Sed0027041 Sechium edule HOM05D004409 ORTHO05D005292 2.4e-12 75.9 90 44.4
Cfa012333 Carpinus fangiana HOM05D004409 ORTHO05D005292 5.3e-12 74.7 99 43.4
ATR1136G211 Amborella trichopoda HOM05D004409 ORTHO05D005292 6.9e-12 74.3 106 41.5
ClCG10G002150 Citrullus lanatus HOM05D004409 ORTHO05D005292 6.9e-12 74.3 102 39.2
CAN.G845.22 Capsicum annuum HOM05D004409 ORTHO05D005292 1.2e-11 73.6 105 40.0
ECA240G0589 Erigeron canadensis HOM05D004409 ORTHO05D005292 1.2e-11 73.6 102 42.2
Hma1.2p1_1014F.1_g247830 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 1.2e-11 73.6 96 44.8
GSVIVG01004838001 Vitis vinifera HOM05D004409 ORTHO05D005292 1.2e-11 73.6 87 41.4
Cc08_g11210 Coffea canephora HOM05D004409 ORTHO05D005292 1.5e-11 73.2 103 41.7
HanXRQChr13g0419051 Helianthus annuus HOM05D004409 ORTHO05D005292 1.5e-11 73.2 100 42.0
Cfa012334 Carpinus fangiana HOM05D004409 ORTHO05D005292 2.0e-11 72.8 103 41.7
Duzib068G0789 Durio zibethinus HOM05D004409 ORTHO05D005292 2.0e-11 72.8 91 47.3
Hma1.2p1_3159F.1_g333389 Hydrangea macrophylla HOM05D004409 ORTHO05D005292 2.6e-11 72.4 103 42.7
PGR042G3450 Punica granatum HOM05D004409 ORTHO05D005292 2.2e-10 69.3 96 41.7
Actinidia25914 Actinidia chinensis HOM05D004409 ORTHO05D005292 2.9e-10 68.9 125 34.4
HanXRQChr13g0418291 Helianthus annuus HOM05D004409 ORTHO05D005292 2.9e-10 68.9 89 42.7
Migut.J00932 Erythranthe guttata HOM05D004409 ORTHO05D005292 3.8e-10 68.6 81 43.2
Aa31LG9G14800 Aethionema arabicum HOM05D004409 ORTHO05D005292 6.4e-10 67.8 106 36.8
Thecc.08G189000 Theobroma cacao HOM05D004409 ORTHO05D005292 6.4e-10 67.8 104 38.5
Lsat_1_v5_gn_6_94401 Lactuca sativa HOM05D004409 ORTHO05D005292 1.4e-09 66.6 83 43.4
Carub.0006s2782 Capsella rubella HOM05D004409 ORTHO05D005292 4.2e-09 65.1 105 33.3
ECA240G4009 Erigeron canadensis HOM05D004409 ORTHO05D005292 4.2e-09 65.1 85 47.1
ATR1136G026 Amborella trichopoda HOM05D004409 ORTHO05D005292 7.1e-09 64.3 94 39.4
THA.LOC104816486 Tarenaya hassleriana HOM05D004409 ORTHO05D005292 2.1e-08 62.8 103 36.9
ATR0745G048 Amborella trichopoda HOM05D004409 ORTHO05D005292 2.7e-08 62.4 83 33.7
ATR1136G215 Amborella trichopoda HOM05D004409 ORTHO05D005292 2.3e-07 59.3 97 37.1
Haze_08359 Corylus avellana HOM05D004409 ORTHO05D005292 5.1e-07 58.2 100 37.0
Gorai.013G138900 Gossypium raimondii HOM05D004409 ORTHO05D005292 2.5e-06 55.8 70 44.3
Dinv34529 Davidia involucrata HOM05D004409 ORTHO05D005292 7.4e-06 54.3 44 54.5


User provided reference genes

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