Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.9e-68 262.3 127 100.0
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 6.3e-19 97.8 122 48.4
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 3.1e-18 95.5 125 48.8
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 3.4e-17 92.0 97 53.6
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 4.5e-17 91.7 133 45.1
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.3e-16 90.1 135 45.2
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 1.7e-16 89.7 98 50.0
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.7e-16 89.7 80 55.0
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 5.0e-16 88.2 129 45.7
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 5.0e-16 88.2 118 48.3
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 1.4e-15 86.7 97 47.4
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 1.9e-15 86.3 118 40.7
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 4.2e-15 85.1 134 41.8
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 4.2e-15 85.1 79 54.4
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 5.5e-15 84.7 110 48.2
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 5.5e-15 84.7 85 50.6
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 5.5e-15 84.7 123 42.3
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 5.5e-15 84.7 124 42.7
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 7.2e-15 84.3 119 42.0
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 9.4e-15 84.0 123 43.9
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.2e-14 83.6 128 43.8
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 1.6e-14 83.2 93 50.5
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 2.1e-14 82.8 116 44.0
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 2.1e-14 82.8 93 50.5
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 2.7e-14 82.4 124 41.9
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 2.7e-14 82.4 140 42.9
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 2.7e-14 82.4 122 42.6
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 3.6e-14 82.0 122 40.2
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 3.6e-14 82.0 84 51.2
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 6.1e-14 81.3 124 41.1
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 6.1e-14 81.3 114 43.9
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 6.1e-14 81.3 93 50.5
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 7.9e-14 80.9 82 51.2
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 7.9e-14 80.9 137 40.1
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 7.9e-14 80.9 80 51.2
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.0e-13 80.5 119 41.2
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.4e-13 80.1 114 43.0
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.4e-13 80.1 120 41.7
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 1.4e-13 80.1 121 43.0
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 1.8e-13 79.7 78 52.6
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 2.3e-13 79.3 86 50.0
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 2.3e-13 79.3 127 42.5
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 3.0e-13 79.0 113 38.9
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 3.9e-13 78.6 114 43.0
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 3.9e-13 78.6 126 41.3
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 3.9e-13 78.6 116 39.7
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 5.1e-13 78.2 83 47.0
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 5.1e-13 78.2 80 52.5
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 6.7e-13 77.8 86 51.2
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 6.7e-13 77.8 86 51.2
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 6.7e-13 77.8 114 42.1
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 6.7e-13 77.8 114 42.1
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 6.7e-13 77.8 95 46.3
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 8.8e-13 77.4 99 45.5
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.1e-12 77.0 92 42.4
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 1.1e-12 77.0 88 45.5
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.1e-12 77.0 122 41.0
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 1.1e-12 77.0 79 48.1
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.5e-12 76.6 127 38.6
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.5e-12 76.6 103 45.6
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 1.5e-12 76.6 118 41.5
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 1.9e-12 76.3 135 40.0
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.9e-12 76.3 81 53.1
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 2.5e-12 75.9 84 48.8
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 3.3e-12 75.5 98 46.9
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 3.3e-12 75.5 117 38.5
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.3e-12 75.5 121 41.3
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 4.3e-12 75.1 95 41.1
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 4.3e-12 75.1 95 41.1
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 4.3e-12 75.1 83 45.8
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 4.3e-12 75.1 85 48.2
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 4.3e-12 75.1 83 44.6
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 4.3e-12 75.1 84 51.2
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 4.3e-12 75.1 84 50.0
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 5.7e-12 74.7 113 38.9
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 5.7e-12 74.7 79 50.6
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 5.7e-12 74.7 90 51.1
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 5.7e-12 74.7 82 43.9
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 5.7e-12 74.7 78 48.7
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 7.4e-12 74.3 95 41.1
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 9.7e-12 73.9 95 41.1
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 9.7e-12 73.9 88 42.0
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 9.7e-12 73.9 88 42.0
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 9.7e-12 73.9 101 39.6
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.3e-11 73.6 94 43.6
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.3e-11 73.6 87 46.0
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.3e-11 73.6 77 48.1
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 1.3e-11 73.6 81 51.9
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 1.3e-11 73.6 79 49.4
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.3e-11 73.6 79 53.2
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 2.2e-11 72.8 94 46.8
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 2.2e-11 72.8 88 42.0
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 2.2e-11 72.8 88 42.0
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 2.2e-11 72.8 118 39.0
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.2e-11 72.8 95 44.2
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.8e-11 72.4 87 47.1
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 2.8e-11 72.4 79 50.6
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 2.8e-11 72.4 130 36.9
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 2.8e-11 72.4 127 38.6
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 3.7e-11 72.0 84 45.2
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.7e-11 72.0 120 40.8
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 3.7e-11 72.0 136 40.4
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 6.3e-11 71.2 85 49.4
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 6.3e-11 71.2 82 50.0
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.3e-11 71.2 79 50.6
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 8.2e-11 70.9 98 39.8
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 8.2e-11 70.9 80 43.8
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 8.2e-11 70.9 77 44.2
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 8.2e-11 70.9 101 43.6
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 8.2e-11 70.9 85 45.9
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 8.2e-11 70.9 100 45.0
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.1e-10 70.5 87 47.1
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.4e-10 70.1 80 52.5
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.4e-10 70.1 80 50.0
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 1.8e-10 69.7 109 36.7
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 1.8e-10 69.7 109 36.7
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 1.8e-10 69.7 107 39.3
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.8e-10 69.7 120 35.0
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.4e-10 69.3 82 46.3
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 3.1e-10 68.9 98 39.8
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 4.1e-10 68.6 109 35.8
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 4.1e-10 68.6 80 40.0
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 4.1e-10 68.6 99 36.4
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 4.1e-10 68.6 79 41.8
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 5.3e-10 68.2 82 46.3
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.9e-10 67.8 103 39.8
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.9e-10 67.8 103 39.8
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.9e-10 67.8 103 39.8
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.9e-10 67.8 103 39.8
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 6.9e-10 67.8 99 37.4
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 9.1e-10 67.4 81 45.7
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.2e-09 67.0 79 48.1
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.2e-09 67.0 78 44.9
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.2e-09 67.0 84 46.4
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 1.5e-09 66.6 92 39.1
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 1.5e-09 66.6 78 50.0
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 2.0e-09 66.2 79 50.6
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 4.5e-09 65.1 80 47.5
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 4.5e-09 65.1 80 45.0
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 5.9e-09 64.7 77 46.8
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 5.9e-09 64.7 78 47.4
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 7.7e-09 64.3 79 46.8
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 7.7e-09 64.3 90 40.0
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 7.7e-09 64.3 106 38.7
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.7e-09 64.3 75 42.7
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 7.7e-09 64.3 80 42.5
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 7.7e-09 64.3 78 47.4
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 1.0e-08 63.9 81 45.7
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 1.0e-08 63.9 94 38.3
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 1.0e-08 63.9 100 42.0
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.3e-08 63.5 84 47.6
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.7e-08 63.2 84 42.9
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.7e-08 63.2 128 39.1
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 3.8e-08 62.0 82 43.9
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 5.0e-08 61.6 77 45.5
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 6.5e-08 61.2 43 65.1
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 6.5e-08 61.2 108 36.1
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 1.1e-07 60.5 83 41.0
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.4e-07 60.1 104 40.4
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.9e-07 59.7 80 40.0
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 2.5e-07 59.3 83 42.2
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.2e-07 58.9 79 46.8
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 3.2e-07 58.9 134 35.8
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 4.2e-07 58.5 86 41.9
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 4.2e-07 58.5 100 38.0
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 7.2e-07 57.8 101 41.6
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 1.6e-06 56.6 76 42.1
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 1.6e-06 56.6 81 40.7
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.1e-06 56.2 119 36.1
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.7e-06 55.8 77 40.3
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 2.7e-06 55.8 79 40.5
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 3.6e-06 55.5 80 42.5
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 4.7e-06 55.1 82 43.9
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.1e-06 54.7 80 40.0


User provided reference genes

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