Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 1.0e-246 856.3 424 100.0
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 5.5e-144 515.0 417 64.3
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 1.6e-143 513.5 420 65.0
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 4.6e-143 511.9 396 66.4
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 2.4e-139 499.6 326 75.5
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 5.9e-138 495.0 368 68.2
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 1.7e-137 493.4 331 72.8
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 2.1e-135 486.5 400 62.0
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 2.7e-135 486.1 318 73.9
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 2.7e-135 486.1 348 69.0
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 4.7e-135 485.3 321 72.0
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 1.0e-134 484.2 320 74.4
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 1.0e-134 484.2 361 66.2
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.4e-134 483.8 399 61.2
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 1.8e-134 483.4 322 73.9
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 5.1e-134 481.9 328 72.3
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 2.6e-133 479.6 331 72.8
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 4.4e-133 478.8 323 73.1
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 1.7e-132 476.9 329 71.7
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 1.7e-132 476.9 330 70.9
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 6.3e-132 474.9 377 64.5
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 9.1e-131 471.1 316 73.4
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.2e-130 470.7 316 70.3
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 2.0e-130 469.9 371 63.9
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 5.9e-130 468.4 315 70.5
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 7.7e-130 468.0 318 69.8
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 7.7e-130 468.0 339 70.2
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 1.0e-129 467.6 324 70.1
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 3.8e-129 465.7 344 68.3
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 5.0e-129 465.3 324 70.4
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 5.0e-129 465.3 324 70.4
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 5.0e-129 465.3 327 68.8
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 8.5e-129 464.5 338 68.9
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 8.5e-129 464.5 375 63.5
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 1.4e-128 463.8 323 68.7
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.4e-128 463.8 316 69.0
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 3.2e-128 462.6 307 73.3
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 3.2e-128 462.6 375 63.5
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 4.2e-128 462.2 341 68.9
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 4.2e-128 462.2 334 69.8
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 4.2e-128 462.2 335 69.6
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 4.2e-128 462.2 332 69.6
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 5.5e-128 461.8 323 68.4
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 5.5e-128 461.8 323 68.4
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 9.4e-128 461.1 357 65.3
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 1.2e-127 460.7 322 69.3
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 2.7e-127 459.5 323 68.4
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 3.6e-127 459.1 261 81.6
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 2.3e-126 456.4 315 68.6
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 3.0e-126 456.1 374 63.6
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.9e-126 455.7 309 69.6
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 5.2e-126 455.3 324 68.5
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 5.2e-126 455.3 324 68.5
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 6.7e-126 454.9 316 69.0
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 1.5e-125 453.8 397 59.7
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 3.3e-125 452.6 407 61.2
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 5.7e-125 451.8 327 69.7
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 7.4e-125 451.4 375 61.9
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 9.7e-125 451.1 327 67.9
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 2.8e-124 449.5 331 69.2
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 2.8e-124 449.5 332 66.9
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 6.3e-124 448.4 341 65.4
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 1.4e-123 447.2 328 65.9
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 1.8e-123 446.8 368 61.1
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 3.5e-122 442.6 327 67.3
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 4.5e-122 442.2 329 67.2
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 5.9e-122 441.8 337 65.3
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 2.9e-121 439.5 323 67.2
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 3.8e-121 439.1 302 70.9
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.1e-120 437.6 329 63.2
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 1.9e-120 436.8 325 64.6
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 4.2e-120 435.6 345 62.9
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 9.4e-120 434.5 244 82.4
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 8.0e-119 431.4 351 63.8
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 1.4e-118 430.6 330 66.7
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.8e-118 430.3 352 62.2
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 2.3e-118 429.9 347 64.6
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 7.5e-117 424.9 315 67.0
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 1.1e-115 421.0 322 65.5
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 4.1e-115 419.1 366 60.4
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 7.0e-115 418.3 381 58.3
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 9.1e-115 417.9 365 58.6
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 9.4e-112 407.9 357 60.2
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 2.1e-111 406.8 318 65.7
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 8.0e-111 404.8 313 64.2
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 3.7e-108 396.0 336 60.4
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 5.9e-106 388.7 371 57.1
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 4.2e-104 382.5 319 62.4
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 2.8e-103 379.8 299 65.6
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 3.0e-102 376.3 325 62.5
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 1.2e-101 374.4 273 64.8
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 5.4e-99 365.5 236 71.6
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 8.6e-97 358.2 192 83.9
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 9.5e-96 354.8 230 72.2
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 5.8e-93 345.5 258 64.7
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 3.7e-92 342.8 249 66.3
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 7.8e-90 335.1 345 51.9
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 3.1e-86 323.2 193 79.3
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 6.8e-86 322.0 367 48.5
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 9.8e-85 318.2 273 57.1
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 8.6e-81 305.1 330 54.5
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 4.0e-78 296.2 342 44.4
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 2.4e-75 287.0 273 51.6
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 8.4e-68 261.9 196 61.2
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 9.2e-67 258.5 227 54.6
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 3.8e-60 236.5 123 85.4
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 3.0e-57 226.9 285 46.7
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 4.3e-56 223.0 118 79.7
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 2.6e-53 213.8 182 61.5
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 6.4e-52 209.1 178 59.6
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 2.4e-51 207.2 114 86.0
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 1.1e-48 198.4 200 55.5
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 4.3e-48 196.4 112 82.1
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.1e-39 167.5 173 54.9
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 3.7e-39 166.8 270 39.3
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 7.6e-37 159.1 94 77.7
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.3e-36 158.3 174 52.9
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 1.6e-34 151.4 197 41.1
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 4.6e-26 123.2 61 85.2
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 3.9e-25 120.2 386 27.2
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 3.3e-24 117.1 98 63.3
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 1.3e-23 115.2 73 75.3
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 2.8e-23 114.0 61 91.8
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.4e-22 110.9 205 38.5
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 5.3e-22 109.8 63 84.1
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 4.5e-21 106.7 55 76.4
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.7e-20 104.8 196 38.8
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.9e-20 104.0 235 36.2
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 2.3e-17 94.4 182 36.8
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 3.0e-17 94.0 78 59.0
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 2.2e-15 87.8 115 42.6
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 1.0e-12 79.0 223 30.9
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 2.9e-12 77.4 54 70.4
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 6.1e-10 69.7 42 78.6
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 3.9e-09 67.0 49 65.3


User provided reference genes

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