Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.8e-131 472.6 251 100.0
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 5.0e-44 182.2 181 54.1
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 1.5e-43 180.6 183 53.0
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 3.2e-43 179.5 182 50.5
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 4.2e-43 179.1 228 44.7
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 4.2e-43 179.1 242 44.6
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.2e-42 177.6 182 52.7
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 1.6e-42 177.2 247 45.7
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 3.6e-42 176.0 173 52.6
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 6.1e-42 175.3 240 44.6
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 1.8e-41 173.7 197 49.2
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 4.0e-41 172.6 174 50.6
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 4.0e-41 172.6 224 44.6
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 5.2e-41 172.2 227 46.3
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 6.7e-41 171.8 209 45.5
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 8.8e-41 171.4 191 49.2
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 8.8e-41 171.4 178 48.9
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 2.6e-40 169.9 168 50.6
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 4.4e-40 169.1 244 41.8
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 4.4e-40 169.1 215 44.2
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 5.7e-40 168.7 169 47.3
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 1.7e-39 167.2 225 44.0
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 3.7e-39 166.0 188 46.3
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 1.1e-38 164.5 251 38.6
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 1.4e-38 164.1 231 40.3
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 1.8e-38 163.7 245 45.7
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 2.4e-38 163.3 249 43.4
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 4.1e-38 162.5 184 45.7
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 5.3e-38 162.2 243 41.2
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 7.0e-38 161.8 236 42.4
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 4.5e-37 159.1 167 50.9
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 1.0e-36 157.9 241 41.1
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 1.3e-36 157.5 161 46.6
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 1.7e-36 157.1 182 45.6
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 2.2e-36 156.8 144 52.1
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 2.9e-36 156.4 246 39.0
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 3.8e-36 156.0 187 46.0
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 3.8e-36 156.0 168 47.6
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 3.8e-36 156.0 251 41.4
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 3.8e-36 156.0 230 43.9
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 5.0e-36 155.6 231 40.7
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 8.5e-36 154.8 244 38.9
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 1.1e-35 154.5 161 49.1
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 1.1e-35 154.5 152 48.7
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 1.5e-35 154.1 206 43.2
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 1.9e-35 153.7 149 50.3
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 1.9e-35 153.7 170 47.1
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 2.5e-35 153.3 241 40.7
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 2.5e-35 153.3 164 47.6
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 2.5e-35 153.3 248 39.1
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 3.2e-35 152.9 248 39.1
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 5.5e-35 152.1 168 45.2
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 5.5e-35 152.1 153 49.7
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 9.4e-35 151.4 235 38.7
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 9.4e-35 151.4 159 45.9
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 8.0e-34 148.3 151 49.7
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 8.0e-34 148.3 168 42.9
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 3.0e-33 146.4 239 41.4
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 5.2e-33 145.6 148 54.1
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 8.8e-33 144.8 241 36.1
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 8.8e-33 144.8 233 38.2
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.3e-31 141.0 250 42.0
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 2.2e-31 140.2 235 39.1
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 2.8e-31 139.8 248 39.9
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 3.7e-31 139.4 179 44.1
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 8.3e-31 138.3 187 43.3
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 3.1e-30 136.3 179 43.6
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 4.1e-30 136.0 183 43.2
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 5.4e-30 135.6 167 43.7
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 1.2e-29 134.4 187 42.8
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 1.2e-29 134.4 187 42.8
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 1.6e-29 134.0 158 46.8
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 1.6e-29 134.0 187 42.8
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 4.5e-29 132.5 248 35.5
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 7.7e-29 131.7 187 42.2
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 4.2e-27 125.9 242 34.7
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 2.3e-25 120.2 153 41.2
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 6.3e-23 112.1 170 37.6
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 6.3e-23 112.1 155 35.5
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 6.3e-23 112.1 159 35.2
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 1.1e-22 111.3 160 38.1
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 1.8e-22 110.5 157 35.0
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 2.4e-22 110.2 155 35.5
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 4.1e-22 109.4 249 37.3
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 7.0e-22 108.6 152 35.5
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 9.2e-22 108.2 142 36.6
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 2.0e-21 107.1 178 36.0
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 2.0e-21 107.1 130 39.2
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.7e-21 106.7 159 33.3
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 5.9e-21 105.5 154 35.7
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 5.9e-21 105.5 157 40.1
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 1.3e-20 104.4 177 35.0
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 2.9e-20 103.2 115 42.6
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 3.8e-20 102.8 171 36.3
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 5.0e-20 102.4 156 36.5
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 6.6e-20 102.1 175 37.1
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.1e-19 101.3 163 34.4
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 1.1e-19 101.3 127 38.6
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 1.1e-19 101.3 158 36.1
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 1.9e-19 100.5 159 35.8
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.9e-19 100.5 151 38.4
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 3.3e-19 99.8 156 38.5
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 5.6e-19 99.0 151 38.4
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 7.3e-19 98.6 186 32.3
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 7.3e-19 98.6 186 32.3
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 7.3e-19 98.6 159 34.6
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 9.5e-19 98.2 166 37.3
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 9.5e-19 98.2 152 36.8
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.2e-18 97.8 170 34.1
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.2e-18 97.8 120 42.5
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 1.6e-18 97.4 149 38.9
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 2.1e-18 97.1 168 35.1
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.8e-18 96.7 167 33.5
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 2.8e-18 96.7 137 39.4
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 2.8e-18 96.7 168 34.5
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 6.1e-18 95.5 152 35.5
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 6.1e-18 95.5 130 36.2
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 6.1e-18 95.5 121 36.4
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 6.1e-18 95.5 209 33.0
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 1.0e-17 94.7 101 43.6
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 3.0e-17 93.2 132 33.3
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.0e-17 92.8 140 35.7
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 5.2e-17 92.4 121 36.4
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 1.2e-16 91.3 70 57.1
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 3.4e-16 89.7 162 32.7
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 4.4e-16 89.4 119 42.9
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 5.7e-16 89.0 158 31.6
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 2.2e-15 87.0 95 40.0
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 6.4e-15 85.5 156 30.1
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 1.1e-14 84.7 155 30.3
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 1.1e-14 84.7 155 30.3
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 1.4e-14 84.3 156 29.5
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.8e-14 84.0 128 33.6
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 2.4e-14 83.6 170 30.0
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 2.4e-14 83.6 121 33.9
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 4.1e-14 82.8 128 32.0
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 4.1e-14 82.8 128 32.0
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 1.6e-13 80.9 152 27.6
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 2.7e-13 80.1 128 31.2
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 2.7e-13 80.1 154 29.2
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 2.7e-13 80.1 154 31.8
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 7.8e-13 78.6 140 32.9
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 2.3e-12 77.0 162 28.4
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 2.3e-12 77.0 162 28.4
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 2.3e-12 77.0 162 28.4
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 3.0e-12 76.6 162 28.4
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 3.0e-12 76.6 162 28.4
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 3.0e-12 76.6 105 39.0
Actinidia08745 Actinidia chinensis HOM05D000074 ORTHO05D006801 3.9e-12 76.3 83 50.6
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 3.9e-12 76.3 162 28.4
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 7.3e-11 72.0 119 33.6
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 3.6e-10 69.7 127 28.3
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 1.8e-09 67.4 87 32.2
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 4.0e-09 66.2 113 34.5
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 7.5e-08 62.0 60 43.3
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 7.5e-08 62.0 128 32.8
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 2.9e-07 60.1 94 30.9
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 6.4e-07 58.9 72 36.1
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 3.2e-06 56.6 115 31.3


User provided reference genes

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