Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 1.7e-255 885.6 464 100.0
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 1.6e-226 789.3 449 92.0
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 4.8e-226 787.7 449 92.2
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 6.3e-226 787.3 442 93.0
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 3.1e-225 785.0 449 91.1
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 6.9e-225 783.9 449 91.3
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 9.0e-225 783.5 449 91.5
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 9.0e-225 783.5 457 90.4
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 9.0e-225 783.5 449 91.3
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 1.5e-224 782.7 449 91.5
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 3.4e-224 781.6 449 91.1
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 5.9e-224 780.8 449 90.6
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 1.3e-223 779.6 449 90.6
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 2.9e-223 778.5 449 91.5
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 5.0e-223 777.7 442 92.1
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 1.1e-222 776.5 442 91.9
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 2.1e-221 772.3 460 88.0
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 2.1e-221 772.3 442 91.2
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 2.7e-221 771.9 442 91.2
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 3.6e-221 771.5 442 91.4
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.6e-221 771.2 449 91.1
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 3.0e-220 768.5 449 89.1
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 3.9e-220 768.1 449 88.9
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 5.1e-220 767.7 449 89.8
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 2.0e-219 765.8 449 88.6
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 2.5e-219 765.4 441 91.4
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 4.3e-219 764.6 449 89.3
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 5.7e-219 764.2 449 90.2
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 9.7e-219 763.5 449 89.1
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 9.7e-219 763.5 450 88.4
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 9.7e-219 763.5 449 89.5
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 1.3e-218 763.1 449 88.2
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 1.7e-218 762.7 449 90.0
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 3.7e-218 761.5 449 88.9
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 3.7e-218 761.5 486 83.5
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 4.8e-218 761.1 449 90.0
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 1.1e-217 760.0 449 88.6
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 1.1e-217 760.0 449 88.6
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 1.4e-217 759.6 449 88.2
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 1.4e-217 759.6 449 88.2
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 2.4e-217 758.8 449 88.4
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 2.4e-217 758.8 464 87.1
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 4.1e-217 758.1 448 89.5
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 6.9e-217 757.3 450 88.4
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 9.1e-217 756.9 450 88.4
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 1.5e-216 756.1 442 89.6
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 2.0e-216 755.7 443 89.2
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 3.4e-216 755.0 442 90.5
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 5.9e-216 754.2 485 82.7
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 5.0e-215 751.1 489 83.2
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 6.5e-215 750.7 449 88.2
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 3.2e-214 748.4 448 87.1
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 9.4e-214 746.9 442 88.0
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 2.1e-213 745.7 448 87.9
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 4.7e-213 744.6 450 87.1
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 8.8e-212 740.3 450 86.7
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 6.3e-210 734.2 525 77.1
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.8e-209 732.6 452 85.0
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 2.6e-208 728.8 449 84.6
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 5.9e-208 727.6 452 85.0
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.0e-207 726.9 452 84.3
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 1.3e-207 726.5 421 91.4
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 2.2e-207 725.7 449 84.2
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 3.8e-207 724.9 449 84.6
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 3.8e-207 724.9 452 83.8
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 1.1e-206 723.4 449 84.0
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 2.5e-206 722.2 449 84.2
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 3.2e-206 721.8 452 83.6
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 3.2e-206 721.8 452 83.6
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 3.2e-206 721.8 452 83.6
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 4.2e-206 721.5 464 82.3
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 9.4e-206 720.3 452 83.6
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 9.4e-206 720.3 452 83.4
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 9.4e-206 720.3 449 84.2
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 2.1e-205 719.2 443 86.9
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 5.2e-204 714.5 449 83.1
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.1e-203 713.4 449 84.4
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.0e-203 712.6 449 83.5
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 1.3e-202 709.9 450 83.3
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 1.3e-202 709.9 450 83.3
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 2.8e-202 708.8 449 84.0
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 3.7e-202 708.4 397 92.7
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 3.7e-202 708.4 464 82.8
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.8e-201 706.1 443 85.8
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 7.0e-201 704.1 451 82.9
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 2.0e-200 702.6 480 78.3
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 5.9e-200 701.0 473 79.3
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 3.7e-194 681.8 472 77.8
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 4.5e-192 674.9 398 89.4
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 1.0e-188 663.7 383 89.8
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 1.0e-183 647.1 450 79.1
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 5.0e-183 644.8 398 85.9
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 5.0e-183 644.8 398 85.9
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 9.5e-182 640.6 398 86.4
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 9.5e-182 640.6 449 73.3
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 9.8e-179 630.6 441 78.5
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 4.6e-176 621.7 403 82.1
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 5.9e-176 621.3 449 77.1
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 1.5e-171 606.7 340 94.4
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 3.4e-163 578.9 365 85.5
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 8.3e-162 574.3 453 66.9
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 1.4e-161 573.5 332 90.1
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 3.2e-161 572.4 353 85.3
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 7.8e-160 567.8 324 93.5
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 1.9e-158 563.1 369 82.4
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 6.8e-156 554.7 447 61.7
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 1.4e-153 547.0 449 67.3
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 5.1e-135 485.3 308 85.7
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 1.6e-128 463.8 324 78.4
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 8.7e-127 458.0 292 80.5
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 2.5e-121 439.9 345 70.4
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 5.9e-115 418.7 246 90.2
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 6.5e-90 335.5 312 64.1
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 9.4e-81 305.1 302 57.9
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 1.1e-76 291.6 497 37.6
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 1.5e-73 281.2 155 89.0
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 5.2e-71 272.7 153 87.6
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 5.2e-71 272.7 294 55.4
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 6.8e-71 272.3 222 70.7
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 6.3e-69 265.8 160 88.1
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 2.9e-66 256.9 188 61.7
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 3.5e-59 233.4 138 89.9
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 1.3e-58 231.5 195 69.7
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.1e-57 228.4 407 41.0
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 3.4e-54 216.9 119 95.8
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 7.3e-49 199.1 338 37.0
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 3.4e-46 190.3 111 91.0
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 9.8e-46 188.7 453 31.6
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 4.6e-43 179.9 111 86.5
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 6.8e-39 166.0 91 92.3
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 2.8e-32 144.1 87 81.6
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 6.2e-32 142.9 76 92.1
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 6.2e-32 142.9 78 85.9
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 2.4e-28 131.0 71 90.1
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 1.0e-26 125.6 81 81.5
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 1.3e-24 118.6 99 67.7
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 4.5e-22 110.2 57 87.7
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 6.4e-21 106.3 57 87.7
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.4e-15 88.6 57 84.2
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 1.8e-15 88.2 52 86.5
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.2e-14 85.5 52 86.5
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 4.5e-14 83.6 45 95.6
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 7.6e-14 82.8 60 76.7
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 2.2e-13 81.3 74 62.2
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 4.9e-13 80.1 44 90.9
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 6.4e-13 79.7 46 93.5
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 6.4e-13 79.7 52 82.7
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.4e-12 77.8 54 75.9
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 2.4e-12 77.8 52 78.8
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 3.4e-06 57.4 33 87.9


User provided reference genes

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