Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J03100 Eucalyptus grandis HOM05D005915 ORTHO05D007239 1.4e-90 336.7 230 100.0
Dinv23302 Davidia involucrata HOM05D005915 ORTHO05D007239 5.2e-40 168.7 239 45.6
Actinidia25458 Actinidia chinensis HOM05D005915 ORTHO05D007239 2.1e-36 156.8 208 53.4
MD17G1221100 Malus domestica HOM05D005915 ORTHO05D007239 1.0e-35 154.5 175 58.3
Manes.11G064500 Manihot esculenta HOM05D005915 ORTHO05D007239 3.9e-35 152.5 173 57.2
CiPaw.01G253100 Carya illinoinensis HOM05D005915 ORTHO05D007239 5.1e-35 152.1 191 57.6
Duzib235G0368 Durio zibethinus HOM05D005915 ORTHO05D007239 6.6e-35 151.8 149 71.1
QL02p069532 Quercus lobata HOM05D005915 ORTHO05D007239 1.5e-34 150.6 220 49.5
Atru.chr6.915 Acer truncatum HOM05D005915 ORTHO05D007239 9.5e-34 147.9 172 62.2
Nitab4.5_0001454g0070 Nicotiana tabacum HOM05D005915 ORTHO05D007239 1.6e-33 147.1 167 52.1
Nitab4.5_0009423g0020 Nicotiana tabacum HOM05D005915 ORTHO05D007239 6.2e-33 145.2 166 53.6
Gohir.D09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 2.4e-32 143.3 172 61.6
Gorai.006G107100 Gossypium raimondii HOM05D005915 ORTHO05D007239 2.4e-32 143.3 173 62.4
Sopen03g036000 Solanum pennellii HOM05D005915 ORTHO05D007239 3.1e-32 142.9 218 43.1
TWI18G1314 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 4.0e-32 142.5 182 52.7
Prupe.7G069400 Prunus persica HOM05D005915 ORTHO05D007239 5.2e-32 142.1 173 60.7
Sed0026009 Sechium edule HOM05D005915 ORTHO05D007239 6.8e-32 141.7 182 53.3
Gohir.A09G090900 Gossypium hirsutum HOM05D005915 ORTHO05D007239 8.9e-32 141.4 159 62.9
PGR142G0337 Punica granatum HOM05D005915 ORTHO05D007239 8.9e-32 141.4 201 50.7
Solyc03g117090.3 Solanum lycopersicum HOM05D005915 ORTHO05D007239 8.9e-32 141.4 218 42.7
COL.COLO4_26669 Corchorus olitorius HOM05D005915 ORTHO05D007239 1.2e-31 141.0 163 62.6
PGSC0003DMG400014193 Solanum tuberosum HOM05D005915 ORTHO05D007239 1.2e-31 141.0 232 42.7
Rhsim08G0207800 Rhododendron simsii HOM05D005915 ORTHO05D007239 1.5e-31 140.6 200 52.0
MELO3C017835.2 Cucumis melo HOM05D005915 ORTHO05D007239 2.0e-31 140.2 145 60.7
PGR102G1994 Punica granatum HOM05D005915 ORTHO05D007239 2.6e-31 139.8 234 47.4
CANSAT56G1340 Cannabis sativa HOM05D005915 ORTHO05D007239 3.4e-31 139.4 158 59.5
Potri.003G180500 Populus trichocarpa HOM05D005915 ORTHO05D007239 3.4e-31 139.4 154 62.3
CsaV3_4G002020 Cucumis sativus L. HOM05D005915 ORTHO05D007239 4.4e-31 139.0 145 60.7
ClCG07G012140 Citrullus lanatus HOM05D005915 ORTHO05D007239 9.9e-31 137.9 196 49.0
TPR.G17738 Trifolium pratense HOM05D005915 ORTHO05D007239 9.9e-31 137.9 176 57.4
Ciclev10026473m.g Citrus clementina HOM05D005915 ORTHO05D007239 2.2e-30 136.7 177 58.8
TWI12G0041 Tripterygium wilfordii HOM05D005915 ORTHO05D007239 2.2e-30 136.7 159 57.2
MSTRG.4689 Avicennia marina HOM05D005915 ORTHO05D007239 2.9e-30 136.3 186 51.1
vmacro19042 Vaccinium macrocarpon HOM05D005915 ORTHO05D007239 2.9e-30 136.3 149 63.8
Phvul.010G159800 Phaseolus vulgaris HOM05D005915 ORTHO05D007239 6.4e-30 135.2 162 61.7
VMungo0331G1031 Vigna mungo HOM05D005915 ORTHO05D007239 6.4e-30 135.2 150 63.3
Glyma.08G216900 Glycine max HOM05D005915 ORTHO05D007239 4.2e-29 132.5 168 58.3
TPR.G38763 Trifolium pratense HOM05D005915 ORTHO05D007239 4.2e-29 132.5 176 56.8
Psat7g259880 Pisum sativum HOM05D005915 ORTHO05D007239 5.4e-29 132.1 174 60.3
THA.LOC104812439 Tarenaya hassleriana HOM05D005915 ORTHO05D007239 9.2e-29 131.3 165 55.8
Ca_20554_v3 Cicer arietinum L. HOM05D005915 ORTHO05D007239 1.6e-28 130.6 172 52.3
Lj3g0003301 Lotus japonicus HOM05D005915 ORTHO05D007239 2.1e-28 130.2 145 62.1
FvH4_5g29190 Fragaria vesca HOM05D005915 ORTHO05D007239 2.7e-28 129.8 164 55.5
Thecc.06G038900 Theobroma cacao HOM05D005915 ORTHO05D007239 3.5e-28 129.4 75 80.0
SGA_v2.0_scaffold89G27484 Striga asiatica HOM05D005915 ORTHO05D007239 4.6e-28 129.0 172 50.0
arahy.Tifrunner.gnm1.ann1.2L8LZM Arachis hypogaea HOM05D005915 ORTHO05D007239 7.8e-28 128.3 148 60.8
PSO063G1890 Papaver somniferum HOM05D005915 ORTHO05D007239 1.7e-27 127.1 126 56.3
arahy.Tifrunner.gnm1.ann1.DN9Y4W Arachis hypogaea HOM05D005915 ORTHO05D007239 3.0e-27 126.3 148 59.5
Oeu033656.3 Olea europaea HOM05D005915 ORTHO05D007239 3.9e-27 125.9 168 48.2
Lsat_1_v5_gn_4_85741 Lactuca sativa HOM05D005915 ORTHO05D007239 5.1e-27 125.6 118 58.5
HPP92_016367 Vanilla planifolia HOM05D005915 ORTHO05D007239 5.1e-27 125.6 181 50.8
Nn2g12284 Nelumbo nucifera HOM05D005915 ORTHO05D007239 6.6e-27 125.2 185 45.9
Medtr8g060830 Medicago truncatula HOM05D005915 ORTHO05D007239 1.1e-26 124.4 188 56.9
Potri.001G047700 Populus trichocarpa HOM05D005915 ORTHO05D007239 1.1e-26 124.4 184 56.5
SHI11251 Sapria himalayana HOM05D005915 ORTHO05D007239 1.5e-26 124.0 161 47.8
TAR633G0597 Trochodendron aralioides HOM05D005915 ORTHO05D007239 1.5e-26 124.0 170 48.2
HanXRQChr04g0107231 Helianthus annuus HOM05D005915 ORTHO05D007239 1.9e-26 123.6 121 54.5
Migut.D01097 Erythranthe guttata HOM05D005915 ORTHO05D007239 2.5e-26 123.2 133 51.9
Medtr4g006550 Medicago truncatula HOM05D005915 ORTHO05D007239 5.6e-26 122.1 188 56.4
RcHm_v2.0_Chr7g0221831 Rosa chinensis HOM05D005915 ORTHO05D007239 5.6e-26 122.1 141 59.6
Sabra01G0033000 Salix brachista HOM05D005915 ORTHO05D007239 7.3e-26 121.7 195 53.3
BcaC08g45335 Brassica carinata HOM05D005915 ORTHO05D007239 3.6e-25 119.4 159 48.4
BolC6t38110H Brassica oleracea HOM05D005915 ORTHO05D007239 3.6e-25 119.4 159 48.4
C06p29450 Brassica napus HOM05D005915 ORTHO05D007239 4.8e-25 119.0 159 49.7
Aqoxy7G03485 Aquilegia oxysepala HOM05D005915 ORTHO05D007239 6.2e-25 118.6 169 50.3
Sc12g0008470 Simmondsia chinensis HOM05D005915 ORTHO05D007239 6.2e-25 118.6 165 53.9
CSS0040460 Camellia sinensis var. sinensis HOM05D005915 ORTHO05D007239 8.1e-25 118.2 165 56.4
PSO782G5373 Papaver somniferum HOM05D005915 ORTHO05D007239 1.8e-24 117.1 181 43.6
BolC6t40396H Brassica oleracea HOM05D005915 ORTHO05D007239 2.4e-24 116.7 165 49.1
Nitab4.5_0004330g0010 Nicotiana tabacum HOM05D005915 ORTHO05D007239 2.4e-24 116.7 114 71.1
BraA07t30325Z Brassica rapa HOM05D005915 ORTHO05D007239 4.0e-24 115.9 157 45.9
Sp5g35050 Schrenkiella parvula HOM05D005915 ORTHO05D007239 4.0e-24 115.9 159 51.6
BraA07t32004Z Brassica rapa HOM05D005915 ORTHO05D007239 5.3e-24 115.5 164 50.0
A07p44990 Brassica napus HOM05D005915 ORTHO05D007239 9.0e-24 114.8 164 50.0
unitig_736.g22803 Utricularia gibba HOM05D005915 ORTHO05D007239 9.0e-24 114.8 157 49.0
Ah.05g171200 Amaranthus hybridus HOM05D005915 ORTHO05D007239 1.2e-23 114.4 123 59.3
Aa31LG4G980 Aethionema arabicum HOM05D005915 ORTHO05D007239 1.5e-23 114.0 169 50.9
A07p26820 Brassica napus HOM05D005915 ORTHO05D007239 1.5e-23 114.0 159 48.4
Carub.0002s2685 Capsella rubella HOM05D005915 ORTHO05D007239 1.5e-23 114.0 170 47.6
ECA232G2243 Erigeron canadensis HOM05D005915 ORTHO05D007239 1.5e-23 114.0 163 44.8
C06p53780 Brassica napus HOM05D005915 ORTHO05D007239 2.6e-23 113.2 155 51.0
EL10As5g23598 Beta vulgaris HOM05D005915 ORTHO05D007239 7.6e-23 111.7 119 52.9
BcaC08g47553 Brassica carinata HOM05D005915 ORTHO05D007239 1.7e-22 110.5 154 51.9
AT1G80700 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 2.2e-22 110.2 164 47.6
BcaB02g07251 Brassica carinata HOM05D005915 ORTHO05D007239 2.2e-22 110.2 157 49.0
PSO339G3366 Papaver somniferum HOM05D005915 ORTHO05D007239 2.9e-22 109.8 129 58.9
Zm00001eb174980 Zea mays HOM05D005915 ORTHO05D007239 6.4e-22 108.6 163 54.6
AUR62022762 Chenopodium quinoa HOM05D005915 ORTHO05D007239 1.1e-21 107.8 154 57.1
Thhalv10019105m.g Eutrema salsugineum HOM05D005915 ORTHO05D007239 1.1e-21 107.8 156 51.3
AL2G40740 Arabidopsis lyrata HOM05D005915 ORTHO05D007239 1.4e-21 107.5 159 49.1
AT1G80980 Arabidopsis thaliana HOM05D005915 ORTHO05D007239 1.4e-21 107.5 160 48.1
HanXRQChr09g0274531 Helianthus annuus HOM05D005915 ORTHO05D007239 1.4e-21 107.5 62 77.4
Lalb_Chr01g0012181 Lupinus albus HOM05D005915 ORTHO05D007239 2.4e-21 106.7 215 47.9
AUR62027568 Chenopodium quinoa HOM05D005915 ORTHO05D007239 3.2e-21 106.3 135 63.0
Oeu008050.2 Olea europaea HOM05D005915 ORTHO05D007239 4.2e-21 105.9 150 47.3
ATR1120G130 Amborella trichopoda HOM05D005915 ORTHO05D007239 5.4e-21 105.5 137 62.0
SalBow6G5910 Salvia bowleyana HOM05D005915 ORTHO05D007239 9.3e-21 104.8 69 69.6
Os08g0278100 Oryza sativa ssp. japonica HOM05D005915 ORTHO05D007239 2.1e-20 103.6 166 53.6
Hund00452 Selenicereus undatus HOM05D005915 ORTHO05D007239 3.0e-19 99.8 196 45.9
GSVIVG01017559001 Vitis vinifera HOM05D005915 ORTHO05D007239 5.1e-19 99.0 140 58.6
Dinv21397 Davidia involucrata HOM05D005915 ORTHO05D007239 2.1e-17 93.6 201 42.8
SEGI_14387 Sequoiadendron giganteum HOM05D005915 ORTHO05D007239 2.1e-17 93.6 148 42.6
CDE05G3202 Ceratophyllum demersum HOM05D005915 ORTHO05D007239 2.4e-16 90.1 96 67.7
FAN18G1559 Fragaria x ananassa HOM05D005915 ORTHO05D007239 4.0e-16 89.4 149 49.7
Cc04_g04930 Coffea canephora HOM05D005915 ORTHO05D007239 1.5e-15 87.4 137 46.7
Mapoly0140s0034 Marchantia polymorpha HOM05D005915 ORTHO05D007239 4.5e-15 85.9 61 63.9
Peaxi162Scf00332g00322 Petunia axillaris HOM05D005915 ORTHO05D007239 5.8e-15 85.5 168 38.1
Prupe.1G199000 Prunus persica HOM05D005915 ORTHO05D007239 6.4e-14 82.0 123 56.1
Cpa.g.sc0.147 Carica papaya HOM05D005915 ORTHO05D007239 9.3e-13 78.2 94 52.1
FAN08G0623 Fragaria x ananassa HOM05D005915 ORTHO05D007239 2.3e-11 73.6 227 35.7
Glyma.07G025532 Glycine max HOM05D005915 ORTHO05D007239 1.1e-10 71.2 45 64.4
Pp3c9_20610 Physcomitrium patens HOM05D005915 ORTHO05D007239 1.9e-10 70.5 156 32.7
QL05p035112 Quercus lobata HOM05D005915 ORTHO05D007239 9.6e-10 68.2 34 94.1
Haze_16650 Corylus avellana HOM05D005915 ORTHO05D007239 1.1e-08 64.7 51 54.9
CARHR073810 Cardamine hirsuta HOM05D005915 ORTHO05D007239 1.5e-07 60.8 46 52.2
CBR_g23038 Chara braunii HOM05D005915 ORTHO05D007239 1.5e-07 60.8 66 45.5
TAR625G0588 Trochodendron aralioides HOM05D005915 ORTHO05D007239 2.0e-07 60.5 37 75.7
BolC3t13327H Brassica oleracea HOM05D005915 ORTHO05D007239 7.6e-07 58.5 101 37.6
Actinidia25450 Actinidia chinensis HOM05D005915 ORTHO05D007239 1.0e-06 58.2 37 64.9


User provided reference genes

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