Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 0.0e+00 1400.2 726 100.0
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 4.0e-227 792.0 727 61.1
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 2.4e-224 782.7 722 60.4
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 8.9e-219 764.2 761 57.2
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 1.9e-216 756.5 722 59.7
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 2.0e-215 753.1 726 58.8
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 3.0e-214 749.2 722 58.4
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 8.6e-214 747.7 727 58.9
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 1.8e-211 740.0 721 58.9
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 4.0e-211 738.8 723 57.3
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 6.8e-211 738.0 723 57.7
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.2e-210 737.3 739 56.7
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 4.4e-210 735.3 722 58.0
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 4.9e-209 731.9 723 56.8
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 4.9e-209 731.9 692 59.1
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 1.4e-208 730.3 724 57.7
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.4e-208 730.3 720 57.8
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 9.2e-208 727.6 721 57.3
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 1.3e-206 723.8 730 56.8
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 3.9e-206 722.2 727 58.3
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 8.6e-206 721.1 718 57.1
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 1.5e-205 720.3 725 56.8
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.9e-205 719.9 724 56.5
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 5.6e-205 718.4 692 59.0
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 9.5e-205 717.6 691 59.0
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 3.1e-203 712.6 726 55.8
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 8.4e-201 704.5 744 55.5
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 1.9e-200 703.4 761 53.7
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 2.4e-200 703.0 761 53.9
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 7.1e-200 701.4 724 56.6
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 1.3e-198 697.2 721 55.6
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 3.0e-198 696.0 727 55.6
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 2.8e-196 689.5 725 56.1
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 1.4e-195 687.2 777 52.6
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 8.9e-195 684.5 732 54.5
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.6e-194 682.9 747 53.7
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 4.4e-194 682.2 691 56.9
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 5.8e-194 681.8 708 57.1
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 2.9e-193 679.5 746 53.4
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 9.3e-192 674.5 738 54.9
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 3.5e-191 672.5 738 54.3
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 1.3e-190 670.6 713 55.7
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 3.0e-190 669.5 785 52.0
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 5.1e-190 668.7 784 52.7
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 5.6e-189 665.2 799 50.8
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 7.3e-189 664.8 785 51.5
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 1.3e-188 664.1 778 53.2
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 1.8e-187 660.2 728 54.4
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 2.4e-187 659.8 805 50.8
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 6.9e-187 658.3 796 50.9
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 9.0e-187 657.9 745 52.8
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 1.5e-186 657.1 605 59.3
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 4.4e-186 655.6 777 51.9
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 2.9e-185 652.9 725 53.5
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 4.9e-185 652.1 789 50.3
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 1.1e-184 651.0 796 49.7
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 4.2e-184 649.0 787 50.6
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 3.9e-182 642.5 744 50.3
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 1.1e-181 641.0 808 49.0
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 1.5e-181 640.6 784 49.6
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.9e-181 640.2 739 52.2
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 2.8e-180 636.3 722 53.9
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.1e-179 634.4 754 52.4
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 4.0e-179 632.5 749 51.8
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 6.9e-179 631.7 693 54.5
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 6.9e-179 631.7 723 53.1
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 6.9e-179 631.7 742 52.2
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 1.2e-178 630.9 754 50.4
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 1.5e-178 630.6 724 52.1
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 9.9e-178 627.9 697 54.4
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 3.2e-176 622.9 724 52.2
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 1.2e-175 620.9 735 50.5
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 4.6e-175 619.0 720 51.7
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 1.0e-174 617.8 730 51.5
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 2.3e-174 616.7 721 50.6
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 6.7e-174 615.1 685 53.6
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.1e-173 614.4 762 48.7
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 1.1e-173 614.4 729 51.6
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 1.9e-173 613.6 693 52.8
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 2.1e-172 610.1 612 55.9
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 4.8e-172 609.0 731 51.3
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.4e-171 607.4 722 51.1
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 3.1e-171 606.3 794 48.1
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 3.1e-171 606.3 717 51.0
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 2.0e-170 603.6 722 50.8
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 2.0e-170 603.6 719 51.9
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 3.4e-170 602.8 723 51.2
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 1.0e-169 601.3 722 49.9
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 1.0e-169 601.3 722 50.8
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.3e-169 600.9 721 51.2
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 1.3e-169 600.9 739 49.7
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 1.1e-168 597.8 723 50.2
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 1.6e-167 594.0 722 50.8
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 7.9e-167 591.7 723 50.2
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 1.0e-166 591.3 733 48.6
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 4.3e-165 585.9 724 50.6
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 5.7e-165 585.5 729 49.7
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 7.4e-165 585.1 547 58.9
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 1.4e-163 580.9 776 48.1
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 1.5e-162 577.4 789 45.8
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 1.9e-160 570.5 712 49.9
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 4.2e-160 569.3 579 54.2
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 5.5e-160 568.9 722 48.6
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 2.3e-158 563.5 706 49.0
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 2.8e-156 556.6 700 51.0
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 2.4e-155 553.5 752 46.7
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 6.9e-155 552.0 808 45.4
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 4.2e-152 542.7 669 49.5
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 5.0e-145 519.2 542 52.6
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 3.0e-142 510.0 681 48.0
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 9.1e-139 498.4 700 47.9
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 3.8e-137 493.0 405 63.2
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 1.2e-133 481.5 824 40.4
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 1.4e-131 474.6 829 39.8
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 1.8e-131 474.2 805 40.1
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.5e-125 454.5 708 43.2
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 2.4e-115 420.6 479 50.9
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 9.2e-115 418.7 728 39.3
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.2e-114 418.3 404 55.9
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.0e-102 378.6 731 37.5
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 9.5e-96 355.5 700 37.1
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 8.1e-87 325.9 444 44.4
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.0e-85 321.2 635 38.4
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 2.1e-74 284.6 480 39.4
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 6.6e-73 279.6 520 40.6
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.1e-70 272.3 448 39.1
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.3e-70 270.0 443 39.5
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 1.5e-69 268.5 643 36.2
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.4e-67 261.2 410 37.6
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.4e-67 260.0 440 37.0
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.2e-66 258.8 451 37.0
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.2e-66 258.8 451 37.0
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.3e-64 250.8 644 32.1
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.6e-63 248.4 256 53.5
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.0e-62 243.8 436 37.6
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 2.4e-59 234.6 407 41.3
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 6.2e-55 219.9 304 46.4
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 9.7e-40 169.5 203 49.8
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 7.7e-37 159.8 160 51.2
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.9e-35 155.2 405 32.6
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.5e-24 119.0 415 31.8
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 5.5e-19 100.5 71 67.6
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 2.5e-11 75.1 75 52.0
Actinidia08821 Actinidia chinensis HOM05D004705 ORTHO05D005595 4.2e-11 74.3 338 27.8
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 1.7e-07 62.4 49 63.3
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.2e-07 62.0 72 44.4
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 3.7e-07 61.2 34 73.5
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 9.1e-06 56.6 81 40.7


User provided reference genes

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