Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J03009 Eucalyptus grandis HOM05D005672 ORTHO05D003038 1.0e-54 216.5 108 100.0
Eucgr.L03103 Eucalyptus grandis HOM05D005672 ORTHO05D003038 5.9e-34 147.5 109 66.1
Eucgr.J03010 Eucalyptus grandis HOM05D005672 ORTHO05D003038 2.5e-32 142.1 111 64.9
Thecc.06G059000 Theobroma cacao HOM05D005672 ORTHO05D003038 9.1e-27 123.6 107 57.9
Duzib160G0695 Durio zibethinus HOM05D005672 ORTHO05D003038 1.0e-25 120.2 111 54.1
Thecc.06G084400 Theobroma cacao HOM05D005672 ORTHO05D003038 5.0e-25 117.9 105 56.2
Duzib192G0432 Durio zibethinus HOM05D005672 ORTHO05D003038 2.1e-23 112.5 104 51.9
Duzib192G0507 Durio zibethinus HOM05D005672 ORTHO05D003038 2.1e-23 112.5 104 51.9
Duzib192G0711 Durio zibethinus HOM05D005672 ORTHO05D003038 2.1e-23 112.5 104 51.9
Prupe.3G072800 Prunus persica HOM05D005672 ORTHO05D003038 6.7e-22 107.5 107 50.5
Manes.04G122400 Manihot esculenta HOM05D005672 ORTHO05D003038 1.1e-21 106.7 111 49.5
Thecc.06G054500 Theobroma cacao HOM05D005672 ORTHO05D003038 1.1e-21 106.7 103 49.5
Duzib192G0281 Durio zibethinus HOM05D005672 ORTHO05D003038 2.6e-21 105.5 99 50.5
Manes.04G122200 Manihot esculenta HOM05D005672 ORTHO05D003038 5.7e-21 104.4 110 45.5
Thecc.06G084800 Theobroma cacao HOM05D005672 ORTHO05D003038 5.7e-21 104.4 107 48.6
Thecc.06G084700 Theobroma cacao HOM05D005672 ORTHO05D003038 9.7e-21 103.6 109 48.6
Duzib192G0747 Durio zibethinus HOM05D005672 ORTHO05D003038 1.7e-20 102.8 102 49.0
Manes.04G122300 Manihot esculenta HOM05D005672 ORTHO05D003038 2.8e-20 102.1 110 44.5
Sed0001381 Sechium edule HOM05D005672 ORTHO05D003038 6.3e-20 100.9 106 51.9
Prupe.3G072700 Prunus persica HOM05D005672 ORTHO05D003038 1.4e-19 99.8 101 44.6
Prupe.6G180200 Prunus persica HOM05D005672 ORTHO05D003038 1.4e-19 99.8 101 44.6
PGR102G1467 Punica granatum HOM05D005672 ORTHO05D003038 1.4e-19 99.8 122 43.4
Ciclev10027568m.g Citrus clementina HOM05D005672 ORTHO05D003038 9.1e-19 97.1 103 45.6
MD09G1214500 Malus domestica HOM05D005672 ORTHO05D003038 2.0e-18 95.9 115 48.7
Actinidia01798 Actinidia chinensis HOM05D005672 ORTHO05D003038 3.4e-18 95.1 106 41.5
Ciclev10027446m.g Citrus clementina HOM05D005672 ORTHO05D003038 3.4e-18 95.1 111 42.3
FAN05G0478 Fragaria x ananassa HOM05D005672 ORTHO05D003038 4.5e-18 94.7 105 41.9
Manes.04G121900 Manihot esculenta HOM05D005672 ORTHO05D003038 4.5e-18 94.7 111 47.7
Manes.04G122000 Manihot esculenta HOM05D005672 ORTHO05D003038 4.5e-18 94.7 111 47.7
Ciclev10027058m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.7e-17 92.8 78 64.1
Dinv30521 Davidia involucrata HOM05D005672 ORTHO05D003038 2.9e-17 92.0 107 49.5
Manes.04G122100 Manihot esculenta HOM05D005672 ORTHO05D003038 3.8e-17 91.7 111 46.8
Actinidia14259 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.1e-16 90.1 105 41.0
Actinidia32765 Actinidia chinensis HOM05D005672 ORTHO05D003038 4.2e-16 88.2 106 38.7
Atru.chr1.3244 Acer truncatum HOM05D005672 ORTHO05D003038 9.4e-16 87.0 86 48.8
Prupe.3G072900 Prunus persica HOM05D005672 ORTHO05D003038 9.4e-16 87.0 116 44.0
Actinidia02490 Actinidia chinensis HOM05D005672 ORTHO05D003038 1.2e-15 86.7 110 40.9
Prupe.3G073800 Prunus persica HOM05D005672 ORTHO05D003038 1.2e-15 86.7 104 43.3
PGR031G0360 Punica granatum HOM05D005672 ORTHO05D003038 2.7e-15 85.5 113 46.9
PGR031G3744 Punica granatum HOM05D005672 ORTHO05D003038 2.7e-15 85.5 113 46.9
TAR624G0127 Trochodendron aralioides HOM05D005672 ORTHO05D003038 1.0e-14 83.6 88 47.7
Cc04_g03540 Coffea canephora HOM05D005672 ORTHO05D003038 1.8e-14 82.8 107 39.3
Ciclev10026803m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.3e-14 82.4 106 49.1
Peaxi162Scf00015g00326 Petunia axillaris HOM05D005672 ORTHO05D003038 2.3e-14 82.4 114 37.7
MD17G1196900 Malus domestica HOM05D005672 ORTHO05D003038 3.0e-14 82.0 109 40.4
PSO339G2623 Papaver somniferum HOM05D007482 ORTHO05D003038 3.0e-14 82.0 105 41.0
Duzib192G0991 Durio zibethinus HOM05D005672 ORTHO05D003038 5.2e-14 81.3 104 38.5
FvH4_6g30990 Fragaria vesca HOM05D005672 ORTHO05D003038 6.7e-14 80.9 105 46.7
Gohir.A09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 8.8e-14 80.5 119 39.5
Gohir.D09G083500 Gossypium hirsutum HOM05D005672 ORTHO05D003038 8.8e-14 80.5 119 39.5
PSO648G0129 Papaver somniferum HOM05D007482 ORTHO05D003038 8.8e-14 80.5 104 40.4
Gorai.006G099100 Gossypium raimondii HOM05D005672 ORTHO05D003038 1.1e-13 80.1 119 39.5
Nn8g39244 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.1e-13 80.1 98 41.8
PSO339G1026 Papaver somniferum HOM05D007482 ORTHO05D003038 1.5e-13 79.7 104 40.4
Duzib235G0754 Durio zibethinus HOM05D005672 ORTHO05D003038 2.0e-13 79.3 115 34.8
COL.COLO4_30353 Corchorus olitorius HOM05D005672 ORTHO05D003038 4.4e-13 78.2 69 52.2
CsaV3_7G033060 Cucumis sativus L. HOM05D005672 ORTHO05D003038 4.4e-13 78.2 111 37.8
Prupe.3G072600 Prunus persica HOM05D005672 ORTHO05D003038 4.4e-13 78.2 101 40.6
PGR031G0657 Punica granatum HOM05D005672 ORTHO05D003038 4.4e-13 78.2 113 44.2
Gorai.006G099200 Gossypium raimondii HOM05D005672 ORTHO05D003038 5.7e-13 77.8 105 42.9
PSO339G4707 Papaver somniferum HOM05D007482 ORTHO05D003038 5.7e-13 77.8 104 40.4
Gohir.D09G083600 Gossypium hirsutum HOM05D005672 ORTHO05D003038 7.4e-13 77.4 105 42.9
Dinv30519 Davidia involucrata HOM05D005672 ORTHO05D003038 9.7e-13 77.0 123 37.4
Oeu006796.1 Olea europaea HOM05D005672 ORTHO05D003038 1.3e-12 76.6 106 37.7
PSO782G2157 Papaver somniferum HOM05D005672 ORTHO05D003038 1.7e-12 76.3 114 37.7
QL05p025003 Quercus lobata HOM05D005672 ORTHO05D003038 1.7e-12 76.3 87 42.5
Atru.chr1.3245 Acer truncatum HOM05D005672 ORTHO05D003038 3.7e-12 75.1 104 41.3
Sed0008395 Sechium edule HOM05D005672 ORTHO05D003038 6.3e-12 74.3 115 36.5
ClCG09G002230 Citrullus lanatus HOM05D005672 ORTHO05D003038 1.1e-11 73.6 110 37.3
Nn8g39246 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.1e-11 73.6 102 45.1
vmacro18924 Vaccinium macrocarpon HOM05D005672 ORTHO05D003038 1.1e-11 73.6 115 39.1
PSO339G0096 Papaver somniferum HOM05D007482 ORTHO05D003038 1.4e-11 73.2 107 39.3
MELO3C030573.2 Cucumis melo HOM05D005672 ORTHO05D003038 2.4e-11 72.4 105 41.0
THA.LOC104823573 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 4.1e-11 71.6 106 35.8
AT1G12663 Arabidopsis thaliana HOM05D007482 ORTHO05D003038 5.3e-11 71.2 107 33.6
PSO630G0001 Papaver somniferum HOM05D007482 ORTHO05D003038 7.0e-11 70.9 94 39.4
THA.LOC104823572 Tarenaya hassleriana HOM05D007482 ORTHO05D003038 7.0e-11 70.9 102 40.2
AL1G24130 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.2e-10 70.1 108 33.3
BcaC05g25121 Brassica carinata HOM05D007482 ORTHO05D003038 1.2e-10 70.1 111 35.1
Migut.I00857 Erythranthe guttata HOM05D005672 ORTHO05D003038 1.2e-10 70.1 105 34.3
Nn2g11778 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.2e-10 70.1 99 39.4
Nn8g39243 Nelumbo nucifera HOM05D005672 ORTHO05D003038 1.2e-10 70.1 67 46.3
Ciclev10026944m.g Citrus clementina HOM05D005672 ORTHO05D003038 2.0e-10 69.3 101 43.6
HanXRQChr10g0314951 Helianthus annuus HOM05D005672 ORTHO05D003038 2.0e-10 69.3 107 35.5
Nn8g39241 Nelumbo nucifera HOM05D005672 ORTHO05D003038 2.0e-10 69.3 98 39.8
Prupe.3G073000 Prunus persica HOM05D005672 ORTHO05D003038 2.0e-10 69.3 111 36.9
Gohir.A09G083700 Gossypium hirsutum HOM05D005672 ORTHO05D003038 2.6e-10 68.9 69 46.4
SalBow2G2205 Salvia bowleyana HOM05D005672 ORTHO05D003038 2.6e-10 68.9 105 35.2
PGSC0003DMG400016538 Solanum tuberosum HOM05D005672 ORTHO05D003038 2.6e-10 68.9 124 33.9
Sopen06g025030 Solanum pennellii HOM05D005672 ORTHO05D003038 3.5e-10 68.6 122 32.8
CAN.G395.17 Capsicum annuum HOM05D005672 ORTHO05D003038 5.9e-10 67.8 121 32.2
Nn8g39245 Nelumbo nucifera HOM05D005672 ORTHO05D003038 5.9e-10 67.8 107 33.6
Solyc06g066750.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 5.9e-10 67.8 122 32.8
MSTRG.22696 Avicennia marina HOM05D005672 ORTHO05D003038 7.7e-10 67.4 109 34.9
CSS0026145 Camellia sinensis var. sinensis HOM05D005672 ORTHO05D003038 7.7e-10 67.4 62 51.6
Hund25654 Selenicereus undatus HOM05D005672 ORTHO05D003038 7.7e-10 67.4 104 31.7
HanXRQChr14g0455911 Helianthus annuus HOM05D005672 ORTHO05D003038 1.3e-09 66.6 106 36.8
BcaC05g25122 Brassica carinata HOM05D007482 ORTHO05D003038 1.7e-09 66.2 107 33.6
Lsat_1_v5_gn_5_129980 Lactuca sativa HOM05D005672 ORTHO05D003038 1.7e-09 66.2 116 35.3
BcaB08g34260 Brassica carinata HOM05D007482 ORTHO05D003038 2.9e-09 65.5 112 34.8
Sp1g11250 Schrenkiella parvula HOM05D007482 ORTHO05D003038 2.9e-09 65.5 113 33.6
ClCG09G002270 Citrullus lanatus HOM05D005672 ORTHO05D003038 3.8e-09 65.1 95 33.7
Nn8g39240 Nelumbo nucifera HOM05D005672 ORTHO05D003038 3.8e-09 65.1 103 32.0
Duzib192G0249 Durio zibethinus HOM05D005672 ORTHO05D003038 6.5e-09 64.3 73 49.3
Nitab4.5_0000351g0210 Nicotiana tabacum HOM05D005672 ORTHO05D003038 6.5e-09 64.3 127 31.5
ECA234G3627 Erigeron canadensis HOM05D005672 ORTHO05D003038 8.5e-09 63.9 101 35.6
Nn8g39242 Nelumbo nucifera HOM05D005672 ORTHO05D003038 8.5e-09 63.9 68 42.6
CAN.G438.58 Capsicum annuum HOM05D005672 ORTHO05D003038 1.1e-08 63.5 115 38.3
Duzib235G0878 Durio zibethinus HOM05D005672 ORTHO05D003038 1.1e-08 63.5 99 33.3
Solyc03g120290.3 Solanum lycopersicum HOM05D005672 ORTHO05D003038 1.1e-08 63.5 112 36.6
Ciclev10027444m.g Citrus clementina HOM05D005672 ORTHO05D003038 1.5e-08 63.2 105 40.0
Sed0004960 Sechium edule HOM05D005672 ORTHO05D003038 1.9e-08 62.8 111 31.5
Sp1g11270 Schrenkiella parvula HOM05D007482 ORTHO05D003038 2.5e-08 62.4 116 32.8
CARHR012960 Cardamine hirsuta HOM05D007482 ORTHO05D003038 3.2e-08 62.0 122 32.8
DCAR_016224 Daucus carota HOM05D005672 ORTHO05D003038 3.2e-08 62.0 113 31.0
Thhalv10023017m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 3.2e-08 62.0 64 42.2
ECA232G2097 Erigeron canadensis HOM05D005672 ORTHO05D003038 4.2e-08 61.6 87 34.5
Nitab4.5_0002327g0030 Nicotiana tabacum HOM05D005672 ORTHO05D003038 4.2e-08 61.6 119 32.8
Sed0015260 Sechium edule HOM05D005672 ORTHO05D003038 4.2e-08 61.6 111 35.1
C08p47210 Brassica napus HOM05D007482 ORTHO05D003038 5.5e-08 61.2 48 50.0
BcaC01g02807 Brassica carinata HOM05D007482 ORTHO05D003038 7.2e-08 60.8 112 33.0
C03p60060 Brassica napus HOM05D007482 ORTHO05D003038 7.2e-08 60.8 112 33.0
A06p09020 Brassica napus HOM05D007482 ORTHO05D003038 9.4e-08 60.5 107 31.8
BraA06t24091Z Brassica rapa HOM05D007482 ORTHO05D003038 9.4e-08 60.5 107 31.8
Carub.0001s1235 Capsella rubella HOM05D007482 ORTHO05D003038 1.2e-07 60.1 109 33.9
CARHR012970 Cardamine hirsuta HOM05D007482 ORTHO05D003038 1.2e-07 60.1 112 33.9
Duzib235G1402 Durio zibethinus HOM05D005672 ORTHO05D003038 1.2e-07 60.1 44 50.0
BcaB08g34258 Brassica carinata HOM05D007482 ORTHO05D003038 1.6e-07 59.7 126 28.6
C08p47200 Brassica napus HOM05D007482 ORTHO05D003038 1.6e-07 59.7 120 29.2
A06p32510 Brassica napus HOM05D007482 ORTHO05D003038 2.1e-07 59.3 112 33.0
C05p10620 Brassica napus HOM05D007482 ORTHO05D003038 2.1e-07 59.3 107 32.7
BolC5t29804H Brassica oleracea HOM05D007482 ORTHO05D003038 2.1e-07 59.3 107 32.7
C05p44560 Brassica napus HOM05D007482 ORTHO05D003038 3.6e-07 58.5 110 30.9
BolC8t52260H Brassica oleracea HOM05D007482 ORTHO05D003038 3.6e-07 58.5 48 47.9
MELO3C023361.2 Cucumis melo HOM05D005672 ORTHO05D003038 3.6e-07 58.5 99 34.3
Thhalv10009322m.g Eutrema salsugineum HOM05D007482 ORTHO05D003038 3.6e-07 58.5 100 32.0
Sopen03g039180 Solanum pennellii HOM05D005672 ORTHO05D003038 4.7e-07 58.2 115 37.4
C08p47190 Brassica napus HOM05D007482 ORTHO05D003038 6.1e-07 57.8 117 28.2
AL1G24160 Arabidopsis lyrata HOM05D007482 ORTHO05D003038 1.0e-06 57.0 106 31.1
BolC5t33183H Brassica oleracea HOM05D007482 ORTHO05D003038 1.0e-06 57.0 110 30.9
Carub.0001s1239 Capsella rubella HOM05D007482 ORTHO05D003038 1.0e-06 57.0 76 36.8
BcaB08g34259 Brassica carinata HOM05D007482 ORTHO05D003038 1.4e-06 56.6 112 33.0
A09p63710 Brassica napus HOM05D007482 ORTHO05D003038 1.4e-06 56.6 48 45.8
A09p63720 Brassica napus HOM05D007482 ORTHO05D003038 1.4e-06 56.6 112 32.1
C08p47220 Brassica napus HOM05D007482 ORTHO05D003038 1.4e-06 56.6 112 33.0
BolC8t52261H Brassica oleracea HOM05D007482 ORTHO05D003038 1.4e-06 56.6 112 33.0
BraA09t41719Z Brassica rapa HOM05D007482 ORTHO05D003038 1.4e-06 56.6 48 45.8
BraA09t41720Z Brassica rapa HOM05D007482 ORTHO05D003038 1.4e-06 56.6 112 32.1
Atru.chr1.3239 Acer truncatum HOM05D005672 ORTHO05D003038 1.8e-06 56.2 111 37.8
Prupe.3G073200 Prunus persica HOM05D005672 ORTHO05D003038 1.8e-06 56.2 115 33.0
BolC8t52262H Brassica oleracea HOM05D007482 ORTHO05D003038 2.3e-06 55.8 108 34.3
BraA09t41718Z Brassica rapa HOM05D007482 ORTHO05D003038 2.3e-06 55.8 121 27.3
Carub.0001s1236 Capsella rubella HOM05D007482 ORTHO05D003038 2.3e-06 55.8 50 48.0
CARHR012950 Cardamine hirsuta HOM05D007482 ORTHO05D003038 2.3e-06 55.8 107 30.8
A09p63700 Brassica napus HOM05D007482 ORTHO05D003038 4.0e-06 55.1 121 26.4
Carub.0004s0495 Capsella rubella HOM05D007482 ORTHO05D003038 4.0e-06 55.1 125 32.0
Potri.003G056450 Populus trichocarpa HOM05D005672 ORTHO05D003038 4.0e-06 55.1 91 36.3
Aqoxy7G01810 Aquilegia oxysepala HOM05D005672 ORTHO05D003038 5.2e-06 54.7 111 29.7
BcaB08g34257 Brassica carinata HOM05D007482 ORTHO05D003038 5.2e-06 54.7 113 29.2
BcaC05g28380 Brassica carinata HOM05D007482 ORTHO05D003038 5.2e-06 54.7 106 31.1
C05p30030 Brassica napus HOM05D007482 ORTHO05D003038 5.2e-06 54.7 129 25.6
BolC5t31740H Brassica oleracea HOM05D007482 ORTHO05D003038 5.2e-06 54.7 129 25.6
CARHR012980 Cardamine hirsuta HOM05D007482 ORTHO05D003038 5.2e-06 54.7 39 56.4
BraA05t21798Z Brassica rapa HOM05D007482 ORTHO05D003038 6.7e-06 54.3 110 30.0
MELO3C023363.2 Cucumis melo HOM05D005672 ORTHO05D003038 6.7e-06 54.3 64 40.6
BraA09t41717Z Brassica rapa HOM05D007482 ORTHO05D003038 8.8e-06 53.9 40 52.5


User provided reference genes

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