Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J02983 Eucalyptus grandis HOM05D006417 ORTHO05D008113 4.4e-27 124.0 68 100.0
BcaC05g25455 Brassica carinata HOM05D006417 ORTHO05D008113 3.4e-19 97.8 60 88.3
BcaC05g25459 Brassica carinata HOM05D006417 ORTHO05D008113 3.4e-19 97.8 60 88.3
BolC5t30076H Brassica oleracea HOM05D006417 ORTHO05D008113 3.4e-19 97.8 60 88.3
BcaC07g38776 Brassica carinata HOM05D006417 ORTHO05D008113 4.4e-19 97.4 60 88.3
BcaC07g41515 Brassica carinata HOM05D006417 ORTHO05D008113 4.4e-19 97.4 60 88.3
A06p11260 Brassica napus HOM05D006417 ORTHO05D008113 4.4e-19 97.4 60 88.3
A08p31670 Brassica napus HOM05D006417 ORTHO05D008113 4.4e-19 97.4 60 88.3
A09p61510 Brassica napus HOM05D006417 ORTHO05D008113 4.4e-19 97.4 60 88.3
C08p45090 Brassica napus HOM05D006417 ORTHO05D008113 4.4e-19 97.4 60 88.3
BolC8t52055H Brassica oleracea HOM05D006417 ORTHO05D008113 4.4e-19 97.4 60 88.3
BraA06t24306Z Brassica rapa HOM05D006417 ORTHO05D008113 4.4e-19 97.4 60 88.3
BraA09t41524Z Brassica rapa HOM05D006417 ORTHO05D008113 4.4e-19 97.4 60 88.3
CARHR015790 Cardamine hirsuta HOM05D006417 ORTHO05D008113 4.4e-19 97.4 60 88.3
Ciclev10026914m.g Citrus clementina HOM05D006417 ORTHO05D008113 4.4e-19 97.4 60 90.0
DCAR_023056 Daucus carota HOM05D006417 ORTHO05D008113 4.4e-19 97.4 60 90.0
Lj5A59T64 Lonicera japonica HOM05D006417 ORTHO05D008113 4.4e-19 97.4 60 90.0
Sp1g13580 Schrenkiella parvula HOM05D006417 ORTHO05D008113 4.4e-19 97.4 60 88.3
Aqoxy7G01686 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 5.7e-19 97.1 60 88.3
AL1G27360 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 5.7e-19 97.1 60 88.3
AT1G15270 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 5.7e-19 97.1 60 88.3
Carub.0001s1503 Capsella rubella HOM05D006417 ORTHO05D008113 5.7e-19 97.1 60 88.3
FAN14G4157 Fragaria x ananassa HOM05D006417 ORTHO05D008113 5.7e-19 97.1 60 88.3
BcaB03g13069 Brassica carinata HOM05D006417 ORTHO05D008113 7.5e-19 96.7 60 86.7
Aa31LG4G200 Aethionema arabicum HOM05D006417 ORTHO05D008113 9.7e-19 96.3 60 86.7
MD17G1194100 Malus domestica HOM05D006417 ORTHO05D008113 9.7e-19 96.3 60 90.0
Gohir.A09G082600 Gossypium hirsutum HOM05D006417 ORTHO05D008113 1.3e-18 95.9 60 86.7
FAN02G0035 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.7e-18 95.5 60 86.7
RcHm_v2.0_Chr2g0138111 Rosa chinensis HOM05D006417 ORTHO05D008113 1.7e-18 95.5 60 86.7
TAR626G0232 Trochodendron aralioides HOM05D006417 ORTHO05D008113 1.7e-18 95.5 60 86.7
Gohir.D09G082500 Gossypium hirsutum HOM05D006417 ORTHO05D008113 2.8e-18 94.7 60 85.0
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 2.8e-18 94.7 59 84.7
FAN05G1876 Fragaria x ananassa HOM05D006417 ORTHO05D008113 3.7e-18 94.4 60 85.0
SalBow2G2995 Salvia bowleyana HOM05D006417 ORTHO05D008113 3.7e-18 94.4 60 86.7
Zm00001eb225700 Zea mays HOM05D006417 ORTHO05D008113 3.7e-18 94.4 60 90.0
Thecc.06G089800 Theobroma cacao HOM05D006417 ORTHO05D008113 4.8e-18 94.0 60 85.0
ATR0724G030 Amborella trichopoda HOM05D006417 ORTHO05D008113 6.3e-18 93.6 60 83.3
Lj3g0004039 Lotus japonicus HOM05D006417 ORTHO05D008113 6.3e-18 93.6 60 85.0
Lalb_Chr01g0012721 Lupinus albus HOM05D006417 ORTHO05D008113 6.3e-18 93.6 60 85.0
Oeu063955.1 Olea europaea HOM05D006417 ORTHO05D008113 8.3e-18 93.2 60 88.3
Aqoxy7G03790 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 1.1e-17 92.8 60 85.0
Glyma.08G206000 Glycine max HOM05D006417 ORTHO05D008113 1.1e-17 92.8 60 85.0
MBI06_g06678_MAGBIO Magnolia biondii HOM05D006417 ORTHO05D008113 1.1e-17 92.8 60 81.7
Prupe.3G069900 Prunus persica HOM05D006417 ORTHO05D008113 1.1e-17 92.8 60 83.3
RcHm_v2.0_Chr2g0106421 Rosa chinensis HOM05D006417 ORTHO05D008113 1.1e-17 92.8 60 86.7
Glyma.07G005600 Glycine max HOM05D006417 ORTHO05D008113 1.4e-17 92.4 60 85.0
Hma1.2p1_2039F.1_g312170 Hydrangea macrophylla HOM05D006417 ORTHO05D008113 1.4e-17 92.4 58 84.5
Medtr4g012800 Medicago truncatula HOM05D006417 ORTHO05D008113 1.4e-17 92.4 60 83.3
Phvul.010G150000 Phaseolus vulgaris HOM05D006417 ORTHO05D008113 1.4e-17 92.4 60 85.0
Psat7g250440 Pisum sativum HOM05D006417 ORTHO05D008113 1.4e-17 92.4 60 83.3
CSS0028003 Camellia sinensis var. sinensis HOM05D006417 ORTHO05D008113 1.8e-17 92.0 59 84.7
Migut.I00879 Erythranthe guttata HOM05D006417 ORTHO05D008113 1.8e-17 92.0 67 76.1
FAN09G4522 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.8e-17 92.0 60 83.3
CANSAT56G0242 Cannabis sativa HOM05D006417 ORTHO05D008113 2.4e-17 91.7 60 83.3
Migut.D01026 Erythranthe guttata HOM05D006417 ORTHO05D008113 2.4e-17 91.7 60 86.7
Cc04_g03270 Coffea canephora HOM05D006417 ORTHO05D008113 3.1e-17 91.3 59 89.8
COL.COLO4_30395 Corchorus olitorius HOM05D006417 ORTHO05D008113 4.1e-17 90.9 60 85.0
ClCG05G003220 Citrullus lanatus HOM05D006417 ORTHO05D008113 5.3e-17 90.5 60 81.7
Manes.04G124600 Manihot esculenta HOM05D006417 ORTHO05D008113 7.0e-17 90.1 69 76.8
Potri.001G181800 Populus trichocarpa HOM05D006417 ORTHO05D008113 7.0e-17 90.1 60 81.7
Sed0026778 Sechium edule HOM05D006417 ORTHO05D008113 7.0e-17 90.1 60 81.7
CARHR091200 Cardamine hirsuta HOM05D006417 ORTHO05D008113 9.1e-17 89.7 60 81.7
Peaxi162Scf00034g00611 Petunia axillaris HOM05D006417 ORTHO05D008113 9.1e-17 89.7 60 85.0
AT3G16040 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 1.2e-16 89.4 60 80.0
CsaV3_3G010850 Cucumis sativus L. HOM05D006417 ORTHO05D008113 1.2e-16 89.4 60 80.0
Atru.chr1.3302 Acer truncatum HOM05D006417 ORTHO05D008113 1.6e-16 89.0 60 78.3
Aa31LG8G3190 Aethionema arabicum HOM05D006417 ORTHO05D008113 1.6e-16 89.0 60 80.0
C08p17070 Brassica napus HOM05D006417 ORTHO05D008113 1.6e-16 89.0 55 85.5
BolC8t49333H Brassica oleracea HOM05D006417 ORTHO05D008113 1.6e-16 89.0 55 85.5
ClCG02G009660 Citrullus lanatus HOM05D006417 ORTHO05D008113 1.6e-16 89.0 60 80.0
Dinv38039 Davidia involucrata HOM05D006417 ORTHO05D008113 1.6e-16 89.0 60 85.0
PGSC0003DMG400007579 Solanum tuberosum HOM05D006417 ORTHO05D008113 1.6e-16 89.0 60 85.0
CiPaw.01G238100 Carya illinoinensis HOM05D006417 ORTHO05D008113 2.0e-16 88.6 60 86.7
Haze_16401 Corylus avellana HOM05D006417 ORTHO05D008113 2.0e-16 88.6 60 85.0
Thhalv10022282m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 2.0e-16 88.6 60 80.0
Hund06616 Selenicereus undatus HOM05D006417 ORTHO05D008113 2.0e-16 88.6 60 83.3
Sc12g0009320 Simmondsia chinensis HOM05D006417 ORTHO05D008113 2.0e-16 88.6 60 85.0
Solyc12g043160.3 Solanum lycopersicum HOM05D006417 ORTHO05D008113 2.0e-16 88.6 60 85.0
unitig_27.g25076 Utricularia gibba HOM05D006417 ORTHO05D008113 2.0e-16 88.6 60 81.7
AL3G28690 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 2.7e-16 88.2 60 78.3
AL810U10020 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 2.7e-16 88.2 60 78.3
CAN.G144.3 Capsicum annuum HOM05D006417 ORTHO05D008113 3.5e-16 87.8 66 77.3
Sed0004760 Sechium edule HOM05D006417 ORTHO05D008113 3.5e-16 87.8 60 78.3
Cpa.g.sc41.8 Carica papaya HOM05D006417 ORTHO05D008113 5.9e-16 87.0 66 77.3
FAN26G3442 Fragaria x ananassa HOM05D006417 ORTHO05D008113 5.9e-16 87.0 60 85.0
HanXRQChr12g0376701 Helianthus annuus HOM05D006417 ORTHO05D008113 5.9e-16 87.0 60 85.0
GSVIVG01017091001 Vitis vinifera HOM05D006417 ORTHO05D008113 5.9e-16 87.0 61 82.0
Carub.0003s1577 Capsella rubella HOM05D006417 ORTHO05D008113 7.7e-16 86.7 60 76.7
Glyma.20G047300 Glycine max HOM05D006417 ORTHO05D008113 7.7e-16 86.7 60 80.0
Gorai.006G098200 Gossypium raimondii HOM05D006417 ORTHO05D008113 7.7e-16 86.7 70 72.9
CiPaw.02G150500 Carya illinoinensis HOM05D006417 ORTHO05D008113 1.3e-15 85.9 60 83.3
HanXRQChr04g0096081 Helianthus annuus HOM05D006417 ORTHO05D008113 1.3e-15 85.9 60 83.3
A05p33430 Brassica napus HOM05D006417 ORTHO05D008113 1.7e-15 85.5 60 76.7
C05p50430 Brassica napus HOM05D006417 ORTHO05D008113 1.7e-15 85.5 60 76.7
AagrBONN_evm.TU.Sc2ySwM_117.2290 Anthoceros agrestis HOM05D006417 ORTHO05D008113 2.9e-15 84.7 60 76.7
Lsat_1_v5_gn_5_130340 Lactuca sativa HOM05D006417 ORTHO05D008113 2.9e-15 84.7 60 81.7
Lj3g0012949 Lotus japonicus HOM05D006417 ORTHO05D008113 3.8e-15 84.3 61 80.3
EL10Ac9g22008 Beta vulgaris HOM05D006417 ORTHO05D008113 6.5e-15 83.6 60 78.3
Nn2g11755 Nelumbo nucifera HOM05D006417 ORTHO05D008113 8.5e-15 83.2 61 78.7
Thhalv10009202m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 1.1e-14 82.8 88 60.2
Pp3c23_11500 Physcomitrium patens HOM05D006417 ORTHO05D008113 1.5e-14 82.4 59 78.0
Sp3g14390 Schrenkiella parvula HOM05D006417 ORTHO05D008113 2.5e-14 81.6 60 75.0
SalBow2G0478 Salvia bowleyana HOM05D008308 ORTHO05D008113 3.2e-14 81.3 53 83.0
BcaC05g28917 Brassica carinata HOM05D006417 ORTHO05D008113 5.5e-14 80.5 58 75.9
Pp3c24_10010 Physcomitrium patens HOM05D006417 ORTHO05D008113 5.5e-14 80.5 59 76.3
Mapoly0091s0070 Marchantia polymorpha HOM05D006417 ORTHO05D008113 1.2e-13 79.3 57 75.4
arahy.Tifrunner.gnm1.ann1.6441EL Arachis hypogaea HOM05D006417 ORTHO05D008113 1.6e-13 79.0 85 60.0
SGA_v2.0_scaffold37G14829 Striga asiatica HOM05D006417 ORTHO05D008113 1.6e-13 79.0 58 75.9
DCAR_002649 Daucus carota HOM05D006417 ORTHO05D008113 2.1e-13 78.6 60 76.7
BcaNung06587 Brassica carinata HOM05D006417 ORTHO05D008113 4.7e-13 77.4 55 76.4
FAN19G1924 Fragaria x ananassa HOM05D006417 ORTHO05D008113 6.1e-13 77.0 49 85.7
FvH4_1g16510 Fragaria vesca HOM05D006417 ORTHO05D008113 8.0e-13 76.6 49 85.7
DCAR_007563 Daucus carota HOM05D006417 ORTHO05D008113 1.0e-12 76.3 60 75.0
DCAR_026325 Daucus carota HOM05D006417 ORTHO05D008113 1.0e-12 76.3 60 75.0
Glyma.14G136351 Glycine max HOM05D006417 ORTHO05D008113 3.4e-11 71.2 55 72.7
ECA247G1523 Erigeron canadensis HOM05D001142 ORTHO05D004628 9.8e-11 69.7 50 80.0
Lsat_1_v5_gn_1_35180 Lactuca sativa HOM05D006417 ORTHO05D008113 1.3e-10 69.3 54 74.1
Nitab4.5_0004241g0020 Nicotiana tabacum HOM05D006417 ORTHO05D008113 1.3e-10 69.3 60 70.0
Cre10.g438600 Chlamydomonas reinhardtii HOM05D006417 ORTHO05D008113 3.7e-10 67.8 57 68.4
ClCG11G012700 Citrullus lanatus HOM05D006417 ORTHO05D008113 4.1e-09 64.3 68 58.8
Lalb_Chr04g0262751 Lupinus albus HOM05D006417 ORTHO05D008113 2.0e-08 62.0 40 87.5
Nitab4.5_0002859g0060 Nicotiana tabacum HOM05D006417 ORTHO05D008113 3.5e-08 61.2 60 63.3
BraA08t35089Z Brassica rapa HOM05D006417 ORTHO05D008113 4.5e-08 60.8 42 81.0
ClCG09G002080 Citrullus lanatus HOM05D000001 ORTHO05D000003 2.3e-07 58.5 40 82.5


User provided reference genes

Program Settings