Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J02648 Eucalyptus grandis HOM05D001014 ORTHO05D000896 4.1e-40 167.5 81 100.0
Eucgr.D02104 Eucalyptus grandis HOM05D001014 ORTHO05D000896 7.8e-23 110.2 68 79.4
Eucgr.E02484 Eucalyptus grandis HOM05D001014 ORTHO05D000896 9.5e-21 103.2 57 87.7
CiPaw.12G049600 Carya illinoinensis HOM05D001014 ORTHO05D000896 1.2e-15 86.3 61 67.2
Prupe.5G064500 Prunus persica HOM05D001014 ORTHO05D000896 3.5e-15 84.7 70 62.9
Cfa012695 Carpinus fangiana HOM05D001014 ORTHO05D000896 1.7e-14 82.4 68 60.3
Haze_07938 Corylus avellana HOM05D001014 ORTHO05D000896 1.7e-14 82.4 68 60.3
Dinv39176 Davidia involucrata HOM05D001014 ORTHO05D000896 3.0e-14 81.6 57 66.7
Lj4g0011640 Lotus japonicus HOM05D001014 ORTHO05D000896 3.9e-14 81.3 65 64.6
Cpa.g.sc89.65 Carica papaya HOM05D001014 ORTHO05D000896 8.6e-14 80.1 72 55.6
CiPaw.11G082600 Carya illinoinensis HOM05D001014 ORTHO05D000896 8.6e-14 80.1 61 62.3
Phvul.003G223000 Phaseolus vulgaris HOM05D001014 ORTHO05D000896 1.5e-13 79.3 60 65.0
VMungo0251G2831 Vigna mungo HOM05D001014 ORTHO05D000896 1.5e-13 79.3 60 65.0
Dinv21667 Davidia involucrata HOM05D001014 ORTHO05D000896 1.9e-13 79.0 57 63.2
TPR.G37584 Trifolium pratense HOM05D001014 ORTHO05D000896 1.9e-13 79.0 58 70.7
Ca_21991_v3 Cicer arietinum L. HOM05D001014 ORTHO05D000896 2.5e-13 78.6 79 53.2
Glyma.05G062500 Glycine max HOM05D001014 ORTHO05D000896 2.5e-13 78.6 69 59.4
Manes.01G084300 Manihot esculenta HOM05D001014 ORTHO05D000896 2.5e-13 78.6 65 63.1
Psat4g073360 Pisum sativum HOM05D001014 ORTHO05D000896 5.6e-13 77.4 65 60.0
Eucgr.E00401 Eucalyptus grandis HOM05D001014 ORTHO05D000896 7.3e-13 77.0 72 61.1
GSVIVG01005818001 Vitis vinifera HOM05D001014 ORTHO05D000896 7.3e-13 77.0 58 63.8
PGR042G2940 Punica granatum HOM05D001014 ORTHO05D000896 9.5e-13 76.6 64 64.1
Glyma.17G144400 Glycine max HOM05D001014 ORTHO05D000896 1.2e-12 76.3 57 66.7
Medtr4g100570 Medicago truncatula HOM05D001014 ORTHO05D000896 1.6e-12 75.9 61 65.6
Manes.02G041700 Manihot esculenta HOM05D001014 ORTHO05D000896 2.8e-12 75.1 64 60.9
arahy.Tifrunner.gnm1.ann1.6XTP94 Arachis hypogaea HOM05D001014 ORTHO05D000896 6.2e-12 73.9 64 59.4
arahy.Tifrunner.gnm1.ann1.FEG3IM Arachis hypogaea HOM05D001014 ORTHO05D000896 6.2e-12 73.9 64 59.4
Ciclev10022000m.g Citrus clementina HOM05D001014 ORTHO05D000896 6.2e-12 73.9 75 53.3
CSS0009086 Camellia sinensis var. sinensis HOM05D001014 ORTHO05D000896 1.1e-11 73.2 57 59.6
Duzib084G1008 Durio zibethinus HOM05D001014 ORTHO05D000896 1.4e-11 72.8 59 64.4
FAN04G0375 Fragaria x ananassa HOM05D001014 ORTHO05D000896 3.1e-11 71.6 60 63.3
FAN08G3045 Fragaria x ananassa HOM05D001014 ORTHO05D000896 3.1e-11 71.6 60 63.3
FAN13G2782 Fragaria x ananassa HOM05D001014 ORTHO05D000896 3.1e-11 71.6 60 63.3
TAR375G0837 Trochodendron aralioides HOM05D001014 ORTHO05D000896 3.1e-11 71.6 64 57.8
Atru.chr9.1262 Acer truncatum HOM05D001014 ORTHO05D000896 4.0e-11 71.2 61 55.7
FvH4_5g19550 Fragaria vesca HOM05D001014 ORTHO05D000896 4.0e-11 71.2 61 62.3
FAN18G3617 Fragaria x ananassa HOM05D001014 ORTHO05D000896 4.0e-11 71.2 61 62.3
MD06G1054500 Malus domestica HOM05D001014 ORTHO05D000896 6.8e-11 70.5 59 61.0
Hma1.2p1_1136F.1_g260600 Hydrangea macrophylla HOM05D001014 ORTHO05D000896 1.2e-10 69.7 57 59.6
Hma1.2p1_1952F.1_g308810 Hydrangea macrophylla HOM05D001014 ORTHO05D000896 1.2e-10 69.7 57 59.6
RcHm_v2.0_Chr7g0204161 Rosa chinensis HOM05D001014 ORTHO05D000896 1.2e-10 69.7 73 54.8
arahy.Tifrunner.gnm1.ann1.DA53FY Arachis hypogaea HOM05D001014 ORTHO05D000896 1.5e-10 69.3 60 61.7
arahy.Tifrunner.gnm1.ann1.E179ZT Arachis hypogaea HOM05D001014 ORTHO05D000896 1.5e-10 69.3 60 61.7
Sed0000200 Sechium edule HOM05D001014 ORTHO05D000896 3.4e-10 68.2 60 55.0
TAR374G1540 Trochodendron aralioides HOM05D001014 ORTHO05D000896 5.8e-10 67.4 64 54.7
Actinidia31509 Actinidia chinensis HOM05D001014 ORTHO05D000896 7.5e-10 67.0 63 58.7
Sed0000023 Sechium edule HOM05D001014 ORTHO05D000896 9.9e-10 66.6 60 56.7
Thecc.01G392000 Theobroma cacao HOM05D001014 ORTHO05D000896 1.3e-09 66.2 59 57.6
EL10Ac5g12333 Beta vulgaris HOM05D001014 ORTHO05D000896 1.7e-09 65.9 60 53.3
QL12p011206 Quercus lobata HOM05D001014 ORTHO05D000896 1.7e-09 65.9 36 80.6
ClCG01G004270 Citrullus lanatus HOM05D001014 ORTHO05D000896 2.2e-09 65.5 61 59.0
MELO3C005512.2 Cucumis melo HOM05D001014 ORTHO05D000896 2.2e-09 65.5 61 60.7
CsaV3_5G004470 Cucumis sativus L. HOM05D001014 ORTHO05D000896 2.2e-09 65.5 61 60.7
Gohir.A08G167700 Gossypium hirsutum HOM05D001014 ORTHO05D000896 2.2e-09 65.5 58 58.6
Gohir.D08G186500 Gossypium hirsutum HOM05D001014 ORTHO05D000896 2.2e-09 65.5 58 58.6
Gorai.004G196000 Gossypium raimondii HOM05D001014 ORTHO05D000896 2.2e-09 65.5 58 58.6
Actinidia10844 Actinidia chinensis HOM05D001014 ORTHO05D000896 3.7e-09 64.7 63 58.7
COL.COLO4_37108 Corchorus olitorius HOM05D001014 ORTHO05D000896 6.4e-09 63.9 58 56.9
MD04G1061000 Malus domestica HOM05D001014 ORTHO05D000896 6.4e-09 63.9 60 56.7
Migut.H01528 Erythranthe guttata HOM05D001014 ORTHO05D000896 1.1e-08 63.2 64 53.1
THA.LOC104812809 Tarenaya hassleriana HOM05D001014 ORTHO05D000896 1.1e-08 63.2 82 43.9
Thecc.03G247100 Theobroma cacao HOM05D001014 ORTHO05D000896 1.1e-08 63.2 58 56.9
Duzib205G1606 Durio zibethinus HOM05D001014 ORTHO05D000896 1.4e-08 62.8 59 59.3
HanXRQChr06g0164471 Helianthus annuus HOM05D001014 ORTHO05D000896 1.4e-08 62.8 71 46.5
Dinv44078 Davidia involucrata HOM05D001014 ORTHO05D000896 1.9e-08 62.4 65 52.3
Rhsim07G0115300 Rhododendron simsii HOM05D001014 ORTHO05D000896 1.9e-08 62.4 71 49.3
PSO063G3393 Papaver somniferum HOM05D001014 ORTHO05D000896 2.4e-08 62.0 58 55.2
PSO782G1093 Papaver somniferum HOM05D001014 ORTHO05D000896 2.4e-08 62.0 58 55.2
Duzib068G0391 Durio zibethinus HOM05D001014 ORTHO05D000896 3.2e-08 61.6 59 57.6
Duzib133G1174 Durio zibethinus HOM05D001014 ORTHO05D000896 3.2e-08 61.6 60 58.3
SGA_v2.0_scaffold49G18273 Striga asiatica HOM05D001014 ORTHO05D000896 3.2e-08 61.6 83 48.2
DCAR_025074 Daucus carota HOM05D001014 ORTHO05D000896 5.4e-08 60.8 94 34.0
Dinv43638 Davidia involucrata HOM05D001014 ORTHO05D000896 5.4e-08 60.8 65 49.2
BcaC09g50470 Brassica carinata HOM05D001014 ORTHO05D000896 7.1e-08 60.5 75 40.0
CSS0035616 Camellia sinensis var. sinensis HOM05D001014 ORTHO05D000896 7.1e-08 60.5 56 58.9
SGA_v2.0_scaffold159G37701 Striga asiatica HOM05D001014 ORTHO05D000896 7.1e-08 60.5 72 52.8
MSTRG.12128 Avicennia marina HOM05D001014 ORTHO05D000896 1.2e-07 59.7 61 52.5
AL7G37220 Arabidopsis lyrata HOM05D001014 ORTHO05D000896 1.6e-07 59.3 64 45.3
Duzib138G0015 Durio zibethinus HOM05D001014 ORTHO05D000896 1.6e-07 59.3 107 37.4
Oeu040700.1 Olea europaea HOM05D001014 ORTHO05D000896 1.6e-07 59.3 47 53.2
Solyc08g078310.3 Solanum lycopersicum HOM05D001014 ORTHO05D000896 1.6e-07 59.3 46 58.7
Sopen08g026810 Solanum pennellii HOM05D001014 ORTHO05D000896 1.6e-07 59.3 46 58.7
PGSC0003DMG400026238 Solanum tuberosum HOM05D001014 ORTHO05D000896 1.6e-07 59.3 46 58.7
Cc08_g12060 Coffea canephora HOM05D001014 ORTHO05D000896 2.1e-07 58.9 81 43.2
Peaxi162Scf00346g01015 Petunia axillaris HOM05D001014 ORTHO05D000896 2.1e-07 58.9 40 65.0
TWI81G0723 Tripterygium wilfordii HOM05D001014 ORTHO05D000896 2.1e-07 58.9 74 44.6
AL5G42660 Arabidopsis lyrata HOM05D001014 ORTHO05D000896 3.5e-07 58.2 70 45.7
Oeu028310.1 Olea europaea HOM05D001014 ORTHO05D000896 3.5e-07 58.2 47 48.9
HPP92_008195 Vanilla planifolia HOM05D001014 ORTHO05D000896 3.5e-07 58.2 83 42.2
BcaC07g42782 Brassica carinata HOM05D001014 ORTHO05D000896 4.6e-07 57.8 103 35.9
BcaC07g42783 Brassica carinata HOM05D001014 ORTHO05D000896 4.6e-07 57.8 103 35.9
Carub.0007s2398 Capsella rubella HOM05D001014 ORTHO05D000896 4.6e-07 57.8 64 43.8
HanXRQChr03g0088951 Helianthus annuus HOM05D001014 ORTHO05D000896 4.6e-07 57.8 43 60.5
Hma1.2p1_0729F.1_g209500 Hydrangea macrophylla HOM05D001014 ORTHO05D000896 4.6e-07 57.8 79 46.8
Sp7g16740 Schrenkiella parvula HOM05D001014 ORTHO05D000896 4.6e-07 57.8 64 43.8
Thhalv10026175m.g Eutrema salsugineum HOM05D001014 ORTHO05D000896 6.0e-07 57.4 76 39.5
Gohir.A08G059400 Gossypium hirsutum HOM05D001014 ORTHO05D000896 6.0e-07 57.4 59 50.8
Gohir.D08G068600 Gossypium hirsutum HOM05D001014 ORTHO05D000896 6.0e-07 57.4 59 50.8
Gorai.004G071800 Gossypium raimondii HOM05D001014 ORTHO05D000896 6.0e-07 57.4 59 50.8
Prupe.2G125500 Prunus persica HOM05D001014 ORTHO05D000896 6.0e-07 57.4 47 59.6
Rhsim07G0034400 Rhododendron simsii HOM05D001014 ORTHO05D000896 6.0e-07 57.4 65 46.2
SalBow7G1348 Salvia bowleyana HOM05D001014 ORTHO05D000896 6.0e-07 57.4 60 48.3
SalBow7G1696 Salvia bowleyana HOM05D001014 ORTHO05D000896 6.0e-07 57.4 60 48.3
HPP92_023130 Vanilla planifolia HOM05D001014 ORTHO05D000896 6.0e-07 57.4 70 41.4
Gohir.A11G076700 Gossypium hirsutum HOM05D001014 ORTHO05D000896 7.8e-07 57.0 43 60.5
Cpa.g.sc101.33 Carica papaya HOM05D001014 ORTHO05D000896 1.0e-06 56.6 60 51.7
DCAR_006846 Daucus carota HOM05D001014 ORTHO05D000896 1.0e-06 56.6 84 34.5
BcaC07g40560 Brassica carinata HOM05D001014 ORTHO05D000896 1.3e-06 56.2 105 35.2
A09p52690 Brassica napus HOM05D001504 ORTHO05D001394 1.3e-06 56.2 105 35.2
C08p35390 Brassica napus HOM05D001504 ORTHO05D001394 1.3e-06 56.2 105 35.2
BolC8t51132H Brassica oleracea HOM05D001504 ORTHO05D001394 1.3e-06 56.2 105 35.2
BraA09t40698Z Brassica rapa HOM05D001014 ORTHO05D000896 1.3e-06 56.2 105 35.2
Migut.N01754 Erythranthe guttata HOM05D001014 ORTHO05D000896 1.3e-06 56.2 57 49.1
Hma1.2p1_1740F.1_g300031 Hydrangea macrophylla HOM05D001014 ORTHO05D000896 1.3e-06 56.2 41 65.9
Lalb_Chr05g0221111 Lupinus albus HOM05D001014 ORTHO05D000896 1.3e-06 56.2 46 58.7
Nitab4.5_0004337g0030 Nicotiana tabacum HOM05D001014 ORTHO05D000896 1.3e-06 56.2 62 46.8
Oeu063223.1 Olea europaea HOM05D001014 ORTHO05D000896 1.3e-06 56.2 47 51.1
AT3G60410 Arabidopsis thaliana HOM05D001014 ORTHO05D000896 1.7e-06 55.8 69 44.9
A01p19910 Brassica napus HOM05D001014 ORTHO05D000896 1.7e-06 55.8 59 44.1
BraA01t01917Z Brassica rapa HOM05D001014 ORTHO05D000896 1.7e-06 55.8 59 44.1
ECA240G0260 Erigeron canadensis HOM05D001014 ORTHO05D000896 1.7e-06 55.8 39 64.1
Nn4g23898 Nelumbo nucifera HOM05D001014 ORTHO05D000896 1.7e-06 55.8 77 45.5
Sp5g02810 Schrenkiella parvula HOM05D001014 ORTHO05D000896 1.7e-06 55.8 70 44.3
MSTRG.4923 Avicennia marina HOM05D001014 ORTHO05D000896 2.3e-06 55.5 61 49.2
vmacro13482 Vaccinium macrocarpon HOM05D001014 ORTHO05D000896 2.3e-06 55.5 70 45.7
MSTRG.14667 Avicennia marina HOM05D001014 ORTHO05D000896 3.0e-06 55.1 55 49.1
A07p34750 Brassica napus HOM05D001014 ORTHO05D000896 3.0e-06 55.1 83 36.1
BraA07t31093Z Brassica rapa HOM05D001014 ORTHO05D000896 3.0e-06 55.1 83 37.3
Gorai.007G086800 Gossypium raimondii HOM05D001014 ORTHO05D000896 3.0e-06 55.1 107 33.6
Lj9P559T19 Lonicera japonica HOM05D001014 ORTHO05D000896 3.0e-06 55.1 92 37.0
Nitab4.5_0001590g0080 Nicotiana tabacum HOM05D001014 ORTHO05D000896 3.0e-06 55.1 62 45.2
Actinidia40392 Actinidia chinensis HOM05D001014 ORTHO05D000896 3.9e-06 54.7 43 58.1
Aa31LG10G14510 Aethionema arabicum HOM05D001014 ORTHO05D000896 3.9e-06 54.7 61 45.9
MSTRG.17141 Avicennia marina HOM05D001014 ORTHO05D000896 3.9e-06 54.7 55 47.3
BcaB03g15817 Brassica carinata HOM05D001014 ORTHO05D000896 3.9e-06 54.7 80 38.8
C06p41660 Brassica napus HOM05D001014 ORTHO05D000896 3.9e-06 54.7 80 38.8
C07p48750 Brassica napus HOM05D001014 ORTHO05D000896 3.9e-06 54.7 78 35.9
BolC6t39260H Brassica oleracea HOM05D001014 ORTHO05D000896 3.9e-06 54.7 80 38.8
Gohir.D11G081100 Gossypium hirsutum HOM05D001014 ORTHO05D000896 3.9e-06 54.7 107 33.6
Oeu035670.1 Olea europaea HOM05D001014 ORTHO05D000896 3.9e-06 54.7 105 35.2
A03p50440 Brassica napus HOM05D001014 ORTHO05D000896 5.1e-06 54.3 78 35.9
BraA03t14134Z Brassica rapa HOM05D001014 ORTHO05D000896 5.1e-06 54.3 78 35.9
Carub.0005s2714 Capsella rubella HOM05D001014 ORTHO05D000896 5.1e-06 54.3 71 43.7
Haze_00622 Corylus avellana HOM05D001014 ORTHO05D000896 5.1e-06 54.3 61 45.9
Nn3g17894 Nelumbo nucifera HOM05D001014 ORTHO05D000896 5.1e-06 54.3 75 44.0
TAR374G1372 Trochodendron aralioides HOM05D001014 ORTHO05D000896 5.1e-06 54.3 75 42.7
unitig_749.g13633 Utricularia gibba HOM05D001014 ORTHO05D007637 5.1e-06 54.3 87 41.4
BcaNung03463 Brassica carinata HOM05D001014 ORTHO05D000896 6.6e-06 53.9 74 37.8
BolC7t45383H Brassica oleracea HOM05D001014 ORTHO05D000896 6.6e-06 53.9 78 34.6
SGA_v2.0_scaffold116G32304 Striga asiatica HOM05D001014 ORTHO05D000896 6.6e-06 53.9 47 55.3
TAR622G0562 Trochodendron aralioides HOM05D001014 ORTHO05D000896 6.6e-06 53.9 64 46.9
Aa31LG6G190 Aethionema arabicum HOM05D001014 ORTHO05D000896 8.6e-06 53.5 66 45.5
AT4G17440 Arabidopsis thaliana HOM05D001014 ORTHO05D000896 8.6e-06 53.5 64 40.6
Thhalv10006081m.g Eutrema salsugineum HOM05D001014 ORTHO05D000896 8.6e-06 53.5 62 45.2
Lalb_Chr16g0386591 Lupinus albus HOM05D001014 ORTHO05D000896 8.6e-06 53.5 61 49.2
Manes.01G271700 Manihot esculenta HOM05D001014 ORTHO05D000896 8.6e-06 53.5 41 58.5
Manes.05G052800 Manihot esculenta HOM05D001014 ORTHO05D000896 8.6e-06 53.5 64 46.9


User provided reference genes

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