Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J02606 Eucalyptus grandis HOM05D005068 ORTHO05D007561 0.0e+00 1713.4 1074 100.0
Manes.09G018800 Manihot esculenta HOM05D005068 ORTHO05D007561 0.0e+00 1149.0 1068 63.4
PGR102G2847 Punica granatum HOM05D005068 ORTHO05D007561 0.0e+00 1149.0 1041 65.0
CiPaw.01G213900 Carya illinoinensis HOM05D005068 ORTHO05D007561 0.0e+00 1135.2 1075 62.3
TAR628G1511 Trochodendron aralioides HOM05D005068 ORTHO05D007561 0.0e+00 1104.7 1047 61.1
Glyma.07G043700 Glycine max HOM05D005068 ORTHO05D007561 0.0e+00 1091.6 1041 62.7
Sed0003275 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1090.9 1048 61.4
Sed0017975 Sechium edule HOM05D005068 ORTHO05D007561 0.0e+00 1089.7 1042 59.9
QL05p001958 Quercus lobata HOM05D005068 ORTHO05D007561 0.0e+00 1088.6 1081 62.1
GSVIVG01016696001 Vitis vinifera HOM05D005068 ORTHO05D007561 0.0e+00 1088.2 1058 63.8
Phvul.010G125200 Phaseolus vulgaris HOM05D005068 ORTHO05D007561 0.0e+00 1087.0 1040 61.3
Cfa003490 Carpinus fangiana HOM05D005068 ORTHO05D007561 0.0e+00 1083.2 1061 62.7
Gorai.011G056800 Gossypium raimondii HOM05D005068 ORTHO05D007561 0.0e+00 1080.5 1044 63.4
VMungo0331G1431 Vigna mungo HOM05D005068 ORTHO05D007561 0.0e+00 1079.3 1031 62.5
Gohir.D10G053200 Gossypium hirsutum HOM05D005068 ORTHO05D007561 0.0e+00 1076.6 1044 63.1
Lj3g0023295 Lotus japonicus HOM05D005068 ORTHO05D007561 0.0e+00 1075.1 1056 62.7
CSS0009347 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 7.3e-312 1074.3 1071 59.0
CSS0048439 Camellia sinensis var. sinensis HOM05D005068 ORTHO05D007561 1.5e-311 1073.2 1082 58.5
Potri.001G164100 Populus trichocarpa HOM05D005068 ORTHO05D007561 3.7e-311 1071.6 1050 59.4
MELO3C024322.2 Cucumis melo HOM05D005068 ORTHO05D007561 1.2e-309 1066.6 1049 61.8
Gohir.A10G051500 Gossypium hirsutum HOM05D005068 ORTHO05D007561 1.6e-309 1066.2 1041 64.6
MD17G1151100 Malus domestica HOM05D005068 ORTHO05D007561 3.6e-309 1065.1 1052 60.4
arahy.Tifrunner.gnm1.ann1.JS5XG8 Arachis hypogaea HOM05D005068 ORTHO05D007561 2.3e-308 1062.4 1070 59.9
Prupe.3G034700 Prunus persica HOM05D005068 ORTHO05D007561 3.0e-308 1062.0 902 66.4
CANSAT01G1537 Cannabis sativa HOM05D005068 ORTHO05D007561 5.2e-308 1061.2 1045 63.7
Ciclev10024779m.g Citrus clementina HOM05D005068 ORTHO05D007561 6.8e-308 1060.8 904 66.8
CsaV3_7G034120 Cucumis sativus L. HOM05D005068 ORTHO05D007561 6.8e-308 1060.8 1051 59.8
Atru.chr1.4129 Acer truncatum HOM05D005068 ORTHO05D007561 4.4e-307 1058.1 861 67.2
Psat2g016360 Pisum sativum HOM05D005068 ORTHO05D007561 8.3e-306 1053.9 1056 60.5
TWI59G1220 Tripterygium wilfordii HOM05D005068 ORTHO05D007561 8.3e-306 1053.9 1078 59.5
MD09G1175700 Malus domestica HOM05D005068 ORTHO05D007561 4.1e-305 1051.6 1075 58.0
Medtr5g019130 Medicago truncatula HOM05D005068 ORTHO05D007561 5.4e-305 1051.2 1059 59.8
Cc04_g00890 Coffea canephora HOM05D005068 ORTHO05D007561 2.0e-304 1049.3 1039 61.7
Hund18654 Selenicereus undatus HOM05D005068 ORTHO05D007561 2.5e-302 1042.3 1054 60.9
Thecc.06G127400 Theobroma cacao HOM05D005068 ORTHO05D007561 1.1e-300 1036.9 1055 64.0
Lalb_Chr04g0253821 Lupinus albus HOM05D005068 ORTHO05D007561 4.0e-300 1035.0 960 62.1
Cpa.g.sc25.173 Carica papaya HOM05D005068 ORTHO05D007561 6.8e-300 1034.2 1094 57.7
Glyma.16G012100 Glycine max HOM05D005068 ORTHO05D007561 2.0e-299 1032.7 1047 61.5
CAN.G790.67 Capsicum annuum HOM05D005068 ORTHO05D007561 1.7e-298 1029.6 1047 57.7
Solyc03g123530.4 Solanum lycopersicum HOM05D005068 ORTHO05D007561 2.9e-298 1028.9 1042 58.3
Medtr4g119670 Medicago truncatula HOM05D005068 ORTHO05D007561 4.9e-298 1028.1 1018 60.2
Nitab4.5_0003981g0040 Nicotiana tabacum HOM05D005068 ORTHO05D007561 4.6e-296 1021.5 1031 59.5
FAN05G3041 Fragaria x ananassa HOM05D005068 ORTHO05D007561 6.0e-296 1021.1 1018 60.0
Nitab4.5_0009947g0020 Nicotiana tabacum HOM05D005068 ORTHO05D007561 2.3e-295 1019.2 888 63.1
Sabra01G0128700 Salix brachista HOM05D005068 ORTHO05D007561 2.3e-295 1019.2 1053 59.9
TPR.G16658 Trifolium pratense HOM05D005068 ORTHO05D007561 3.0e-295 1018.8 1068 59.0
Aqoxy1G00349 Aquilegia oxysepala HOM05D005068 ORTHO05D007561 5.0e-295 1018.1 1044 57.2
FAN14G5424 Fragaria x ananassa HOM05D005068 ORTHO05D007561 1.5e-294 1016.5 1036 59.6
THA.LOC104808063 Tarenaya hassleriana HOM05D005068 ORTHO05D007561 9.5e-294 1013.8 896 65.3
FvH4_6g35460 Fragaria vesca HOM05D005068 ORTHO05D007561 6.2e-293 1011.1 1028 59.6
Haze_16103 Corylus avellana HOM05D005068 ORTHO05D007561 1.1e-292 1010.4 1194 55.3
RcHm_v2.0_Chr2g0147011 Rosa chinensis HOM05D005068 ORTHO05D007561 4.0e-292 1008.4 1022 58.2
Peaxi162Scf00038g02247 Petunia axillaris HOM05D005068 ORTHO05D007561 2.7e-288 995.7 1038 57.5
Sp5g27520 Schrenkiella parvula HOM05D005068 ORTHO05D007561 4.6e-288 995.0 906 61.8
AL2G32110 Arabidopsis lyrata HOM05D005068 ORTHO05D007561 3.0e-287 992.3 913 61.7
EL10Ac7g16459 Beta vulgaris HOM05D005068 ORTHO05D007561 5.1e-287 991.5 1096 56.8
PSO384G5027 Papaver somniferum HOM05D005068 ORTHO05D007561 5.1e-287 991.5 1072 57.1
AUR62009935 Chenopodium quinoa HOM05D005068 ORTHO05D007561 6.6e-287 991.1 1037 57.8
Sopen03g041300 Solanum pennellii HOM05D005068 ORTHO05D007561 8.6e-287 990.7 1060 58.2
PSO339G5314 Papaver somniferum HOM05D005068 ORTHO05D007561 1.1e-286 990.3 1075 58.6
Ca_23422_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 1.9e-286 989.6 1062 57.3
Lsat_1_v5_gn_5_136720 Lactuca sativa HOM05D005068 ORTHO05D007561 7.3e-286 987.6 1036 58.1
AT1G72440 Arabidopsis thaliana HOM05D005068 ORTHO05D007561 1.2e-285 986.9 906 61.3
HanXRQChr12g0360151 Helianthus annuus HOM05D005068 ORTHO05D007561 1.2e-285 986.9 1016 59.7
ECA234G0903 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.6e-285 986.5 1026 58.5
Oeu000383.1 Olea europaea HOM05D005068 ORTHO05D007561 1.8e-284 983.0 1050 55.0
Ca_30848_v3 Cicer arietinum L. HOM05D005068 ORTHO05D007561 3.1e-284 982.2 879 61.2
Carub.0002s1929 Capsella rubella HOM05D005068 ORTHO05D007561 1.3e-282 976.9 910 61.3
MSTRG.22527 Avicennia marina HOM05D005068 ORTHO05D007561 1.2e-280 970.3 1051 55.9
Lj5A31T61 Lonicera japonica HOM05D005068 ORTHO05D007561 1.1e-278 963.8 865 61.6
Thhalv10018056m.g Eutrema salsugineum HOM05D005068 ORTHO05D007561 1.5e-278 963.4 911 60.3
arahy.Tifrunner.gnm1.ann1.X03KN2 Arachis hypogaea HOM05D005068 ORTHO05D007561 4.3e-278 961.8 914 59.6
BcaB03g14995 Brassica carinata HOM05D005068 ORTHO05D007561 9.6e-278 960.7 894 62.4
ClCG09G001250 Citrullus lanatus HOM05D005068 ORTHO05D007561 9.6e-278 960.7 1049 57.0
SalBow6G5915 Salvia bowleyana HOM05D005068 ORTHO05D007561 9.6e-278 960.7 894 62.0
Peaxi162Scf00535g00325 Petunia axillaris HOM05D005068 ORTHO05D007561 3.1e-276 955.7 1050 55.0
CARHR065370 Cardamine hirsuta HOM05D005068 ORTHO05D007561 6.9e-276 954.5 1047 58.6
FAN09G4827 Fragaria x ananassa HOM05D005068 ORTHO05D007561 6.9e-276 954.5 1041 58.9
BcaC08g46695 Brassica carinata HOM05D005068 ORTHO05D007561 5.8e-275 951.4 890 62.4
AUR62001432 Chenopodium quinoa HOM05D005068 ORTHO05D007561 3.8e-274 948.7 1058 53.4
C06p46800 Brassica napus HOM05D005068 ORTHO05D007561 1.6e-272 943.3 1027 57.8
DCAR_026429 Daucus carota HOM05D005068 ORTHO05D007561 2.1e-272 943.0 898 58.8
BolC6t39723H Brassica oleracea HOM05D005068 ORTHO05D007561 4.6e-272 941.8 1036 57.4
Rhsim08G0242500 Rhododendron simsii HOM05D005068 ORTHO05D007561 2.6e-267 926.0 1028 56.7
Aa31LG4G2770 Aethionema arabicum HOM05D005068 ORTHO05D007561 1.9e-265 919.8 917 60.4
unitig_26.g8921 Utricularia gibba HOM05D005068 ORTHO05D007561 4.6e-264 915.2 1046 55.6
CDE05G0629 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 3.0e-263 912.5 849 57.8
BraA07t31420Z Brassica rapa HOM05D005068 ORTHO05D007561 1.1e-262 910.6 893 60.5
Nn8g38536 Nelumbo nucifera HOM05D005068 ORTHO05D007561 4.3e-262 908.7 1049 53.3
MBI13_g01677_MAGBIO Magnolia biondii HOM05D005068 ORTHO05D007561 3.0e-255 885.9 896 57.4
HPP92_014041 Vanilla planifolia HOM05D005068 ORTHO05D007561 2.6e-251 872.8 1052 51.0
ATR0317G028 Amborella trichopoda HOM05D005068 ORTHO05D007561 1.3e-250 870.5 909 56.7
vmacro15071 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.5e-249 866.3 869 57.5
Os09g0116400 Oryza sativa ssp. japonica HOM05D005068 ORTHO05D007561 6.0e-248 861.7 1062 48.2
Zm00001eb008900 Zea mays HOM05D005068 ORTHO05D007561 3.8e-242 842.4 921 52.6
Actinidia21819 Actinidia chinensis HOM05D005068 ORTHO05D007561 6.5e-242 841.6 717 63.2
SGA_v2.0_scaffold71G23904 Striga asiatica HOM05D005068 ORTHO05D007561 1.5e-235 820.5 895 55.5
Nitab4.5_0007072g0030 Nicotiana tabacum HOM05D005068 ORTHO05D007561 4.2e-233 812.4 816 59.4
SEGI_35987 Sequoiadendron giganteum HOM05D005068 ORTHO05D007561 7.7e-227 791.6 886 51.9
COL.COLO4_30833 Corchorus olitorius HOM05D005068 ORTHO05D007561 4.5e-219 765.8 591 69.4
vmacro14086 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 1.4e-215 754.2 608 66.4
TAR383G0209 Trochodendron aralioides HOM05D005068 ORTHO05D007561 4.2e-209 732.6 714 60.2
FAN02G4153 Fragaria x ananassa HOM05D005068 ORTHO05D007561 5.9e-203 712.2 617 63.4
SHI38508 Sapria himalayana HOM05D005068 ORTHO05D007561 3.5e-195 686.4 848 48.7
Migut.I01119 Erythranthe guttata HOM05D005068 ORTHO05D007561 7.8e-195 685.3 854 48.8
AagrBONN_evm.TU.Sc2ySwM_228.3616 Anthoceros agrestis HOM05D005068 ORTHO05D007561 3.3e-193 679.9 951 44.1
Pp3c8_7540 Physcomitrium patens HOM05D005068 ORTHO05D007561 1.8e-183 647.5 955 43.0
Mapoly0001s0039 Marchantia polymorpha HOM05D005068 ORTHO05D007561 1.3e-178 631.3 897 43.9
A07p38620 Brassica napus HOM05D005068 ORTHO05D007561 1.2e-174 618.2 561 63.3
Dinv37834 Davidia involucrata HOM05D005068 ORTHO05D007561 4.3e-169 599.7 503 65.2
Sc12g0010810 Simmondsia chinensis HOM05D005068 ORTHO05D007561 5.8e-166 589.3 739 50.9
ECA234G3781 Erigeron canadensis HOM05D005068 ORTHO05D007561 2.3e-154 550.8 902 43.1
CBR_g4353 Chara braunii HOM05D005068 ORTHO05D007561 1.8e-143 514.6 997 35.6
CDE11G1047 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 1.5e-142 511.5 647 48.2
PGSC0003DMG400009145 Solanum tuberosum HOM05D005068 ORTHO05D007561 1.3e-141 508.4 577 55.1
SMO356G0436 Selaginella moellendorffii HOM05D005068 ORTHO05D007561 1.9e-137 494.6 836 39.1
Dinv37835 Davidia involucrata HOM05D005068 ORTHO05D007561 2.2e-125 454.5 357 68.9
Cre10.g459600 Chlamydomonas reinhardtii HOM05D005068 ORTHO05D007561 6.3e-104 383.3 972 34.9
CDE11G0362 Ceratophyllum demersum HOM05D005068 ORTHO05D007561 9.4e-100 369.4 372 55.1
Haze_25369 Corylus avellana HOM05D005068 ORTHO05D007561 6.5e-93 346.7 659 39.5
TAR383G0400 Trochodendron aralioides HOM05D005068 ORTHO05D007561 4.4e-89 334.0 317 56.8
PRCOL_00007240 Prasinoderma coloniale HOM05D005068 ORTHO05D007561 2.9e-80 304.7 606 40.3
SHI25215 Sapria himalayana HOM05D005068 ORTHO05D007561 4.0e-74 284.3 414 43.2
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 2.4e-71 275.0 731 31.3
Cc00_g06320 Coffea canephora HOM05D005068 ORTHO05D007561 2.3e-61 241.9 218 59.2
Psat7g194920 Pisum sativum HOM05D005068 ORTHO05D030493 4.6e-54 217.6 207 61.4
FAN23G2170 Fragaria x ananassa HOM05D005068 ORTHO05D007561 5.1e-53 214.2 179 62.6
vmacro14085 Vaccinium macrocarpon HOM05D005068 ORTHO05D007561 2.6e-49 201.8 249 51.8
MSTRG.13912 Avicennia marina HOM05D005068 ORTHO05D019833 2.6e-41 175.3 101 83.2
Psat7g194960 Pisum sativum HOM05D005068 ORTHO05D030493 1.1e-31 143.3 158 53.8
Hund18058 Selenicereus undatus HOM05D005068 ORTHO05D030493 1.1e-31 143.3 158 54.4
Psat4g066440 Pisum sativum HOM05D005068 ORTHO05D030493 1.1e-28 133.3 90 76.7
HanXRQChr04g0122031 Helianthus annuus HOM05D005068 ORTHO05D007561 1.3e-27 129.8 132 55.3
Zm00001eb239840 Zea mays HOM05D001561 ORTHO05D001715 3.7e-19 101.7 79 60.8
COL.COLO4_30832 Corchorus olitorius HOM05D005068 ORTHO05D014954 5.3e-18 97.8 51 92.2
Sc16g0005100 Simmondsia chinensis HOM05D005068 ORTHO05D014954 5.3e-18 97.8 57 78.9
ECA233G2064 Erigeron canadensis HOM05D005068 ORTHO05D007561 1.0e-16 93.6 90 55.6
Lj5C31T11 Lonicera japonica HOM05D005068 ORTHO05D019833 2.3e-13 82.4 234 38.9
vmacro15070 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.1e-10 73.6 221 42.1
vmacro14087 Vaccinium macrocarpon HOM05D005068 ORTHO05D019833 1.5e-09 69.7 36 88.9
C04p42190 Brassica napus HOM05D014151 ORTHO05D014954 5.5e-07 61.2 45 62.2
C09p50490 Brassica napus HOM05D014151 ORTHO05D014954 5.5e-07 61.2 45 62.2
Sc16g0005210 Simmondsia chinensis HOM05D005068 ORTHO05D019833 1.2e-06 60.1 223 35.4
C03p21460 Brassica napus HOM05D014151 ORTHO05D014954 2.1e-06 59.3 45 60.0
BolC3t14532H Brassica oleracea HOM05D014151 ORTHO05D014954 2.1e-06 59.3 45 60.0
BcaC09g47952 Brassica carinata HOM05D014151 ORTHO05D014954 4.6e-06 58.2 45 57.8


User provided reference genes

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