Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 6.5e-154 547.4 276 100.0
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 3.1e-95 352.4 276 64.5
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 1.5e-94 350.1 278 62.6
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 5.8e-94 348.2 281 61.9
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 5.4e-92 341.7 277 62.1
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 2.7e-91 339.3 284 63.0
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 7.8e-91 337.8 278 62.6
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 7.8e-91 337.8 286 62.9
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 3.0e-90 335.9 281 63.7
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 1.1e-89 334.0 274 60.6
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 2.5e-89 332.8 280 63.2
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 4.3e-89 332.0 283 62.9
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 1.2e-88 330.5 274 59.9
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 1.2e-88 330.5 280 62.9
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 2.1e-88 329.7 279 62.7
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 2.8e-88 329.3 284 58.5
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 6.2e-88 328.2 279 60.9
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 6.2e-88 328.2 277 60.3
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 8.1e-88 327.8 286 59.1
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.1e-87 327.4 274 59.1
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.1e-87 327.4 274 59.1
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 1.4e-87 327.0 279 58.8
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 2.6e-86 322.8 280 59.6
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 4.4e-86 322.0 280 60.7
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 4.4e-86 322.0 291 58.8
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 9.9e-86 320.9 277 59.6
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 2.9e-85 319.3 279 58.1
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 3.8e-85 318.9 279 58.1
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 1.4e-84 317.0 274 58.4
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 2.4e-84 316.2 278 56.8
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 7.1e-84 314.7 280 57.5
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 1.2e-83 313.9 289 58.5
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 4.6e-83 312.0 285 56.5
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 4.6e-83 312.0 274 58.4
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 4.6e-83 312.0 291 57.7
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 7.8e-83 311.2 287 58.5
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.0e-82 310.8 291 57.7
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 1.0e-82 310.8 278 57.9
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 3.9e-82 308.9 274 60.9
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 3.9e-82 308.9 274 61.3
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 5.1e-82 308.5 274 61.3
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 5.1e-82 308.5 278 56.5
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 5.1e-82 308.5 277 56.7
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 6.6e-82 308.1 287 57.8
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 8.7e-82 307.8 274 60.9
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 8.7e-82 307.8 274 60.9
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 8.7e-82 307.8 277 59.6
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 8.7e-82 307.8 277 60.3
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 1.9e-81 306.6 275 60.4
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 2.5e-81 306.2 273 57.9
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 4.3e-81 305.4 274 59.5
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 1.2e-80 303.9 282 56.4
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 1.2e-80 303.9 278 59.0
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 1.2e-80 303.9 278 59.4
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 2.8e-80 302.8 279 55.2
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 4.7e-80 302.0 280 57.5
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 4.7e-80 302.0 285 54.7
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 4.7e-80 302.0 274 58.8
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 6.2e-80 301.6 288 54.2
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 6.2e-80 301.6 274 58.8
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 6.2e-80 301.6 276 59.1
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 8.1e-80 301.2 274 58.4
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 8.1e-80 301.2 275 56.4
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 1.8e-79 300.1 274 58.8
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 3.1e-79 299.3 274 58.4
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 3.1e-79 299.3 274 58.8
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 3.1e-79 299.3 275 56.4
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 3.1e-79 299.3 279 54.8
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 4.0e-79 298.9 304 53.9
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 6.9e-79 298.1 274 58.4
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.9e-79 298.1 274 58.4
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 1.5e-78 297.0 276 56.2
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 1.5e-78 297.0 274 58.8
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 2.0e-78 296.6 274 58.0
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 2.0e-78 296.6 334 48.2
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 4.4e-78 295.4 274 57.3
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 5.8e-78 295.0 269 55.8
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 7.6e-78 294.7 286 54.9
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 1.3e-77 293.9 286 53.5
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 2.2e-77 293.1 274 58.0
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 8.4e-77 291.2 280 56.4
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 1.1e-76 290.8 283 55.5
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 1.9e-76 290.0 231 63.6
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.9e-76 290.0 278 55.8
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 4.2e-76 288.9 261 59.4
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 5.4e-76 288.5 289 54.0
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 5.4e-76 288.5 288 54.5
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 9.3e-76 287.7 288 53.5
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 3.5e-75 285.8 246 62.2
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 4.6e-75 285.4 300 53.0
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 4.6e-75 285.4 274 55.8
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 1.0e-74 284.3 279 54.8
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 5.1e-74 282.0 211 67.3
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 5.1e-74 282.0 300 54.7
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 6.6e-74 281.6 280 54.3
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 1.9e-73 280.0 200 69.5
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 2.5e-73 279.6 277 54.9
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 3.3e-73 279.3 289 52.6
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 7.3e-73 278.1 286 52.8
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 1.6e-72 276.9 211 64.0
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 4.5e-70 268.9 229 60.3
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 2.2e-69 266.5 299 50.5
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 4.9e-69 265.4 280 52.5
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 6.4e-69 265.0 232 59.9
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 8.4e-69 264.6 263 54.8
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 1.2e-67 260.8 186 68.3
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 1.3e-66 257.3 194 64.4
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 1.8e-66 256.9 271 50.6
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 2.3e-66 256.5 213 58.7
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 3.9e-66 255.8 224 59.8
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 5.1e-66 255.4 226 59.3
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 1.1e-65 254.2 287 48.8
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 1.9e-65 253.4 278 51.4
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 4.3e-65 252.3 185 68.1
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 7.4e-65 251.5 235 53.2
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 3.1e-63 246.1 211 58.8
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 3.4e-62 242.7 277 47.3
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 7.1e-60 235.0 211 57.8
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.0e-59 231.9 261 49.4
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 7.9e-59 231.5 232 52.6
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 7.9e-59 231.5 191 60.2
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 2.4e-55 219.9 211 55.9
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.7e-53 213.8 232 50.4
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 7.9e-51 204.9 240 45.4
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 2.5e-49 199.9 281 39.9
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.5e-46 190.7 162 56.8
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 3.6e-43 179.5 196 50.5
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 5.1e-42 175.6 196 51.0
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 5.9e-38 162.2 339 32.7
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 8.5e-37 158.3 198 46.5
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 1.7e-32 144.1 117 63.2
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 8.2e-32 141.7 115 64.3
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 3.1e-31 139.8 116 60.3
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 7.0e-31 138.7 108 64.8
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 9.1e-31 138.3 115 59.1
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 3.0e-26 123.2 272 30.5
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 2.3e-18 97.1 89 55.1
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 4.4e-17 92.8 188 28.2
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 1.7e-16 90.9 130 43.1
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 2.2e-16 90.5 121 44.6
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 8.3e-16 88.6 85 50.6
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 1.4e-15 87.8 280 31.1
Duzib192G1079 Durio zibethinus HOM05D004903 ORTHO05D005849 9.1e-15 85.1 205 31.2
Cpa.g.sc25.204 Carica papaya HOM05D004903 ORTHO05D005849 2.2e-13 80.5 109 40.4
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 3.2e-12 76.6 100 43.0
Hma1.2p1_0090F.1_g045690 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 3.2e-12 76.6 69 56.5
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 3.4e-09 66.6 49 71.4
TPR.G26438 Trifolium pratense HOM05D004903 ORTHO05D005849 8.3e-08 62.0 74 44.6
Actinidia21845 Actinidia chinensis HOM05D004903 ORTHO05D005849 1.4e-07 61.2 44 63.6
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 2.4e-07 60.5 121 28.9
MBI17_g12881_MAGBIO Magnolia biondii HOM05D007686 ORTHO05D009709 4.1e-07 59.7 56 53.6


User provided reference genes

Program Settings