Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J02482 Eucalyptus grandis HOM05D003331 ORTHO05D003264 2.2e-94 349.0 182 100.0
Cfa007016 Carpinus fangiana HOM05D003331 ORTHO05D003264 7.6e-26 121.3 206 47.1
Thecc.01G013300 Theobroma cacao HOM05D003331 ORTHO05D003264 3.2e-24 115.9 166 50.6
QL06p051331 Quercus lobata HOM05D003331 ORTHO05D003264 6.0e-23 111.7 175 50.3
COL.COLO4_22478 Corchorus olitorius HOM05D003331 ORTHO05D003264 9.6e-21 104.4 162 48.8
Duzib147G1072 Durio zibethinus HOM05D003331 ORTHO05D003264 9.6e-21 104.4 166 48.2
Manes.02G109000 Manihot esculenta HOM05D003331 ORTHO05D003264 2.4e-19 99.8 169 48.5
Potri.005G109500 Populus trichocarpa HOM05D003331 ORTHO05D003264 5.3e-19 98.6 181 44.2
Sabra05G0089800 Salix brachista HOM05D003331 ORTHO05D003264 1.5e-18 97.1 173 44.5
CiPaw.08G127600 Carya illinoinensis HOM05D003331 ORTHO05D003264 2.0e-18 96.7 171 46.8
Hma1.2p1_0561F.1_g178920 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 2.0e-18 96.7 164 45.7
Haze_03715 Corylus avellana HOM05D003331 ORTHO05D003264 3.4e-18 95.9 171 46.8
PGR102G0808 Punica granatum HOM05D003331 ORTHO05D003264 4.5e-18 95.5 178 46.6
A08p21610 Brassica napus HOM05D003331 ORTHO05D003264 2.9e-17 92.8 173 41.0
BraA08t34108Z Brassica rapa HOM05D003331 ORTHO05D003264 2.9e-17 92.8 173 41.0
CAN.G225.18 Capsicum annuum HOM05D000004 ORTHO05D000002 3.8e-17 92.4 163 42.9
Cc07_g11170 Coffea canephora HOM05D003331 ORTHO05D003264 4.9e-17 92.0 172 45.3
Manes.01G149900 Manihot esculenta HOM05D003331 ORTHO05D003264 6.4e-17 91.7 173 44.5
TAR625G0644 Trochodendron aralioides HOM05D003331 ORTHO05D003264 8.4e-17 91.3 173 42.8
BolC3t20356H Brassica oleracea HOM05D003331 ORTHO05D003264 9.3e-16 87.8 184 38.0
Potri.005G243400 Populus trichocarpa HOM05D003331 ORTHO05D003264 9.3e-16 87.8 179 39.7
MBI08_g06420_MAGBIO Magnolia biondii HOM05D003331 ORTHO05D003264 1.2e-15 87.4 184 44.0
Sp7g33680 Schrenkiella parvula HOM05D003331 ORTHO05D003264 1.2e-15 87.4 190 37.4
BcaC01g00527 Brassica carinata HOM05D003331 ORTHO05D003264 2.1e-15 86.7 184 38.0
Gohir.A11G172900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.5e-15 85.9 172 43.0
Gohir.D11G179900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 4.6e-15 85.5 172 44.2
C03p80970 Brassica napus HOM05D003331 ORTHO05D003264 6.0e-15 85.1 184 37.5
Dinv08561 Davidia involucrata HOM05D003331 ORTHO05D003264 6.0e-15 85.1 164 37.2
Thhalv10025822m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 6.0e-15 85.1 185 40.5
Gorai.007G191800 Gossypium raimondii HOM05D003331 ORTHO05D003264 6.0e-15 85.1 172 44.2
BcaNung04885 Brassica carinata HOM05D003331 ORTHO05D003264 6.7e-14 81.6 185 36.8
Duzib264G0309 Durio zibethinus HOM05D003331 ORTHO05D003264 6.7e-14 81.6 168 42.9
THA.LOC104807508 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 6.7e-14 81.6 175 40.6
THA.LOC104819740 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 6.7e-14 81.6 180 40.0
Nn2g14480 Nelumbo nucifera HOM05D003331 ORTHO05D003264 8.7e-14 81.3 181 38.1
Gohir.A02G173200 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.3e-13 79.3 170 47.6
TAR628G1529 Trochodendron aralioides HOM05D003331 ORTHO05D003264 3.3e-13 79.3 167 38.9
C07p61400 Brassica napus HOM05D003331 ORTHO05D003264 4.3e-13 79.0 187 38.5
CARHR244290 Cardamine hirsuta HOM05D003331 ORTHO05D003264 4.3e-13 79.0 193 38.9
Nitab4.5_0001789g0110 Nicotiana tabacum HOM05D003331 ORTHO05D003264 5.6e-13 78.6 163 41.7
Aa31LG6G12860 Aethionema arabicum HOM05D003331 ORTHO05D003264 7.4e-13 78.2 183 38.3
Carub.0007s0433 Capsella rubella HOM05D003331 ORTHO05D003264 7.4e-13 78.2 188 36.2
BolC7t46566H Brassica oleracea HOM05D003331 ORTHO05D003264 9.6e-13 77.8 179 39.7
MD15G1240800 Malus domestica HOM05D003331 ORTHO05D003264 1.3e-12 77.4 190 37.4
Actinidia02367 Actinidia chinensis HOM05D003331 ORTHO05D003264 1.6e-12 77.0 162 38.3
BcaNung00784 Brassica carinata HOM05D003331 ORTHO05D003264 1.6e-12 77.0 181 37.6
C01p03140 Brassica napus HOM05D003331 ORTHO05D003264 1.6e-12 77.0 181 37.6
BolC1t00299H Brassica oleracea HOM05D003331 ORTHO05D003264 1.6e-12 77.0 181 37.6
A03p63930 Brassica napus HOM05D003331 ORTHO05D003264 2.1e-12 76.6 178 39.3
BraA03t15462Z Brassica rapa HOM05D003331 ORTHO05D003264 2.1e-12 76.6 178 39.3
COL.COLO4_26108 Corchorus olitorius HOM05D003331 ORTHO05D003264 2.8e-12 76.3 173 39.3
Manes.05G144400 Manihot esculenta HOM05D003331 ORTHO05D003264 2.8e-12 76.3 171 38.0
Sabra05G0188500 Salix brachista HOM05D003331 ORTHO05D003264 2.8e-12 76.3 178 38.8
TWI09G0177 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 2.8e-12 76.3 162 40.1
GSVIVG01009970001 Vitis vinifera HOM05D003331 ORTHO05D003264 2.8e-12 76.3 171 35.1
Carub.0003s3191 Capsella rubella HOM05D003331 ORTHO05D003264 3.6e-12 75.9 170 38.2
Haze_22676 Corylus avellana HOM05D003331 ORTHO05D003264 3.6e-12 75.9 164 38.4
TWI53G1588 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 8.1e-12 74.7 165 38.8
Oeu020389.1 Olea europaea HOM05D003331 ORTHO05D003264 1.1e-11 74.3 167 37.1
QL02p012465 Quercus lobata HOM05D003331 ORTHO05D003264 1.1e-11 74.3 187 41.7
Thecc.08G048800 Theobroma cacao HOM05D003331 ORTHO05D003264 1.1e-11 74.3 175 36.6
AT4G35900 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 1.4e-11 73.9 181 37.6
Ciclev10003845m.g Citrus clementina HOM05D003331 ORTHO05D003264 2.4e-11 73.2 178 38.2
Gohir.D03G006700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.1e-11 72.8 166 45.2
Prupe.7G173300 Prunus persica HOM05D003331 ORTHO05D003264 3.1e-11 72.8 201 36.8
MD02G1125100 Malus domestica HOM05D003331 ORTHO05D003264 6.9e-11 71.6 175 37.7
Manes.18G012121 Manihot esculenta HOM05D003331 ORTHO05D003264 6.9e-11 71.6 168 39.9
CANSAT01G0941 Cannabis sativa HOM05D003331 ORTHO05D003264 9.0e-11 71.2 178 42.7
Aqoxy6G02126 Aquilegia oxysepala HOM05D003331 ORTHO05D003264 1.5e-10 70.5 185 37.8
Gorai.003G007000 Gossypium raimondii HOM05D003331 ORTHO05D003264 1.5e-10 70.5 166 45.2
Gohir.D05G187300 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.0e-10 70.1 171 38.6
Hund16511 Selenicereus undatus HOM05D003331 ORTHO05D003264 2.0e-10 70.1 167 42.5
GSVIVG01006332001 Vitis vinifera HOM05D003331 ORTHO05D003264 2.0e-10 70.1 163 38.7
Gohir.A05G184500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.6e-10 69.7 174 37.4
Cfa013989 Carpinus fangiana HOM05D003331 ORTHO05D003264 4.5e-10 68.9 164 39.6
Gorai.009G192500 Gossypium raimondii HOM05D003331 ORTHO05D003264 4.5e-10 68.9 171 38.0
Peaxi162Scf00328g00414 Petunia axillaris HOM05D003331 ORTHO05D003264 7.6e-10 68.2 165 40.0
Sopen02g012950 Solanum pennellii HOM05D003331 ORTHO05D003264 7.6e-10 68.2 163 40.5
AL3G50780 Arabidopsis lyrata HOM05D003331 ORTHO05D003264 9.9e-10 67.8 165 35.8
Nitab4.5_0000188g0190 Nicotiana tabacum HOM05D003331 ORTHO05D003264 9.9e-10 67.8 167 38.3
PGSC0003DMG400023897 Solanum tuberosum HOM05D003331 ORTHO05D003264 1.3e-09 67.4 162 37.0
Nitab4.5_0002337g0180 Nicotiana tabacum HOM05D003331 ORTHO05D003264 1.7e-09 67.0 168 38.1
A01p02810 Brassica napus HOM05D003331 ORTHO05D003264 2.2e-09 66.6 177 37.9
BraA01t00264Z Brassica rapa HOM05D003331 ORTHO05D003264 2.2e-09 66.6 177 37.9
Oeu033812.1 Olea europaea HOM05D003331 ORTHO05D003264 2.9e-09 66.2 164 35.4
CAN.G890.4 Capsicum annuum HOM05D003331 ORTHO05D003264 4.9e-09 65.5 163 37.4
A09p11560 Brassica napus HOM05D003331 ORTHO05D003264 6.4e-09 65.1 163 35.0
HanXRQChr15g0487141 Helianthus annuus HOM05D003331 ORTHO05D003264 6.4e-09 65.1 164 36.6
Lj2g0025662 Lotus japonicus HOM05D003331 ORTHO05D003264 6.4e-09 65.1 176 37.5
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 6.4e-09 65.1 130 37.7
RcHm_v2.0_Chr2g0098731 Rosa chinensis HOM05D003331 ORTHO05D003264 8.4e-09 64.7 190 36.3
BcaNung05055 Brassica carinata HOM05D003331 ORTHO05D003264 1.1e-08 64.3 185 34.6
FAN23G2926 Fragaria x ananassa HOM05D003331 ORTHO05D003264 1.1e-08 64.3 196 36.7
CiPaw.07G145300 Carya illinoinensis HOM05D003331 ORTHO05D003264 1.4e-08 63.9 176 35.2
Duzib093G0576 Durio zibethinus HOM05D003331 ORTHO05D003264 1.9e-08 63.5 174 34.5
CARHR108160 Cardamine hirsuta HOM05D003331 ORTHO05D003264 2.4e-08 63.2 169 34.9
CsaV3_3G000600 Cucumis sativus L. HOM05D003331 ORTHO05D003264 3.2e-08 62.8 173 37.0
Dinv40128 Davidia involucrata HOM05D003331 ORTHO05D003264 3.2e-08 62.8 120 40.8
Cpa.g.sc26.287 Carica papaya HOM05D003331 ORTHO05D003264 4.2e-08 62.4 188 34.6
Sopen02g028310 Solanum pennellii HOM05D003331 ORTHO05D003264 5.5e-08 62.0 167 35.3
FAN19G3075 Fragaria x ananassa HOM05D003331 ORTHO05D003264 7.1e-08 61.6 193 35.2
Lsat_1_v5_gn_4_145080 Lactuca sativa HOM05D003331 ORTHO05D003264 7.1e-08 61.6 173 33.5
FvH4_1g11270 Fragaria vesca HOM05D003331 ORTHO05D003264 9.3e-08 61.2 200 36.0
FAN20G2542 Fragaria x ananassa HOM05D003331 ORTHO05D003264 9.3e-08 61.2 177 33.3
FAN26G3159 Fragaria x ananassa HOM05D003331 ORTHO05D003264 9.3e-08 61.2 197 36.0
Hma1.2p1_0315F.1_g122420 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 1.2e-07 60.8 162 35.2
FvH4_2g38080 Fragaria vesca HOM05D003331 ORTHO05D003264 2.1e-07 60.1 168 32.7
BcaB03g16550 Brassica carinata HOM05D003331 ORTHO05D003264 2.7e-07 59.7 164 34.1
BraA09t36795Z Brassica rapa HOM05D003331 ORTHO05D003264 2.7e-07 59.7 162 33.3
Peaxi162Scf00439g00042 Petunia axillaris HOM05D003331 ORTHO05D003264 2.7e-07 59.7 164 35.4
Thhalv10023128m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 6.0e-07 58.5 162 34.6
Oeu012566.1 Olea europaea HOM05D003331 ORTHO05D003264 1.0e-06 57.8 162 37.7
Sp3g31180 Schrenkiella parvula HOM05D003331 ORTHO05D003264 1.0e-06 57.8 162 34.0
SalBow3G1427 Salvia bowleyana HOM05D003331 ORTHO05D003264 1.3e-06 57.4 162 35.8
Solyc02g083520.2 Solanum lycopersicum HOM05D003331 ORTHO05D003264 1.3e-06 57.4 168 35.7
FAN28G0558 Fragaria x ananassa HOM05D003331 ORTHO05D003264 1.8e-06 57.0 192 35.4
AT2G17770 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 2.3e-06 56.6 170 35.3
MELO3C013748.2 Cucumis melo HOM05D003331 ORTHO05D003264 2.3e-06 56.6 173 37.6
VMungo1215G2112 Vigna mungo HOM05D003331 ORTHO05D003264 2.3e-06 56.6 169 36.1
BcaC04g22944 Brassica carinata HOM05D003331 ORTHO05D003264 3.9e-06 55.8 162 33.3
C09p13610 Brassica napus HOM05D003331 ORTHO05D003264 3.9e-06 55.8 162 33.3
BolC9t54251H Brassica oleracea HOM05D003331 ORTHO05D003264 3.9e-06 55.8 162 33.3
Lalb_Chr16g0377411 Lupinus albus HOM05D003331 ORTHO05D003264 3.9e-06 55.8 163 35.0
Phvul.002G105700 Phaseolus vulgaris HOM05D003331 ORTHO05D003264 6.7e-06 55.1 169 36.7


User provided reference genes

Program Settings