Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1506.5 741 100.0
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1246.9 695 84.2
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1246.5 695 85.0
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1238.8 695 83.9
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1236.1 695 84.2
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1234.9 695 83.7
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1229.5 695 84.3
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1228.8 695 83.3
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1224.2 696 83.2
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1218.4 696 82.3
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1213.7 694 82.9
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1213.0 695 82.6
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1211.8 698 83.0
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1210.7 695 82.6
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1204.9 695 81.4
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1204.5 694 81.1
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1201.4 695 82.0
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1199.9 695 82.0
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1199.9 693 82.5
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1199.5 691 81.8
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1196.4 695 81.9
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1192.2 700 80.6
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1191.0 694 81.1
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1190.3 697 80.8
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1189.1 698 79.8
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1188.7 693 81.7
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1188.3 694 81.0
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1187.6 694 80.8
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1184.5 694 80.5
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1184.5 695 80.9
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1184.1 694 80.4
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1183.7 694 80.1
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1183.3 694 80.0
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1183.3 695 80.1
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1182.2 720 79.0
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1181.8 692 80.9
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1180.6 698 80.1
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1180.6 695 80.7
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1180.2 694 80.1
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1180.2 697 80.2
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1177.9 714 78.2
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1177.2 695 80.7
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1176.4 698 79.8
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1176.0 698 79.7
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1175.6 695 80.1
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1175.2 695 80.0
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1174.8 695 79.3
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1174.8 695 80.4
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1174.5 698 79.5
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1172.5 674 81.6
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1172.1 697 79.9
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1170.2 694 80.0
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1169.8 695 79.6
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1169.1 692 79.9
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1168.7 698 78.8
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1167.5 694 79.3
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1167.1 694 79.4
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1164.8 695 79.3
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1164.8 695 79.6
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1164.1 695 79.7
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1161.0 695 78.3
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1158.3 698 78.1
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1158.3 698 79.4
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1157.9 696 79.5
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1157.5 694 78.5
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 700 78.0
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1152.5 694 78.4
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1151.7 695 77.6
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 696 79.5
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1150.6 696 78.2
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1150.2 694 77.7
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1148.7 696 78.2
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1147.9 694 77.4
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1146.7 694 77.2
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1145.2 694 77.2
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1142.5 695 77.4
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1137.1 694 78.8
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1134.8 693 79.1
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1134.0 719 76.4
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1132.9 687 77.1
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1126.3 694 77.2
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1125.5 693 78.5
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1124.4 698 76.9
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1123.2 747 73.2
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1117.1 713 74.3
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1115.9 741 74.5
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1114.4 695 77.0
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1110.1 755 72.1
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1098.2 647 79.4
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 0.0e+00 1095.9 613 84.5
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1095.5 736 73.4
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1095.1 694 74.1
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1093.6 736 73.2
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 0.0e+00 1085.5 695 76.7
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1084.3 696 75.6
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 0.0e+00 1081.2 705 72.9
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 1.0e-311 1072.8 695 75.3
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 5.2e-307 1057.4 675 73.8
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 5.7e-298 1027.3 701 70.2
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 4.9e-297 1024.2 582 82.3
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 3.2e-296 1021.5 705 69.8
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 1.6e-295 1019.2 689 71.1
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 1.5e-282 976.1 639 74.2
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 4.6e-271 937.9 709 67.3
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 4.8e-260 901.4 540 79.3
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 6.9e-259 897.5 581 73.1
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 6.7e-246 854.4 699 60.5
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.7e-233 813.1 539 72.5
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 4.3e-229 798.5 697 55.8
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.3e-222 776.2 703 55.2
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.3e-222 776.2 703 55.2
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.1e-221 773.9 471 78.6
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.5e-221 773.5 704 55.3
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 5.0e-217 758.4 717 55.5
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.0e-214 750.7 702 54.0
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.3e-188 664.1 386 80.8
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 1.8e-158 563.9 720 42.9
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 1.2e-151 541.2 378 69.3
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 8.4e-140 501.9 507 54.0
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 3.1e-110 403.7 786 34.9
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 1.7e-108 397.9 247 77.7
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 1.2e-101 375.2 827 32.4
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 1.0e-100 372.1 344 57.8
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.1e-98 364.4 277 64.3
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 7.2e-75 286.2 251 59.0
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 2.1e-74 284.6 247 59.1
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 2.8e-74 284.3 178 75.3
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 7.0e-70 269.6 166 74.7
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 5.9e-69 266.5 184 69.6
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 1.8e-65 255.0 633 31.1
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 1.7e-63 248.4 235 54.9
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 1.5e-51 208.8 131 73.3
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 1.2e-48 199.1 138 73.9
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 3.3e-43 181.0 145 66.2
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 1.9e-35 155.2 95 77.9
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 3.6e-34 151.0 232 39.7
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 6.9e-33 146.7 75 90.7
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 3.4e-32 144.4 76 88.2
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 3.6e-26 124.4 84 65.5
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 9.3e-22 109.8 86 55.8
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 2.6e-16 91.7 87 52.9
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 3.5e-13 81.3 50 78.0
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 3.0e-12 78.2 50 72.0
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 9.3e-06 56.6 33 72.7


User provided reference genes

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