Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J02351 Eucalyptus grandis HOM05D006526 ORTHO05D008496 7.4e-186 653.7 319 100.0
PGR042G1209 Punica granatum HOM05D006526 ORTHO05D008496 9.6e-125 450.7 270 79.6
Potri.001G330100 Populus trichocarpa HOM05D006526 ORTHO05D008496 1.6e-124 449.9 284 77.1
Manes.15G161000 Manihot esculenta HOM05D006526 ORTHO05D008496 3.6e-124 448.7 303 74.6
Thecc.04G036000 Theobroma cacao HOM05D006526 ORTHO05D008496 4.7e-124 448.4 314 72.6
COL.COLO4_13261 Corchorus olitorius HOM05D006526 ORTHO05D008496 6.8e-123 444.5 314 72.3
Duzib147G1379 Durio zibethinus HOM05D006526 ORTHO05D008496 9.9e-122 440.7 310 72.3
CiPaw.03G055600 Carya illinoinensis HOM05D006526 ORTHO05D008496 1.7e-121 439.9 292 75.7
Ciclev10015967m.g Citrus clementina HOM05D006526 ORTHO05D008496 4.9e-121 438.3 288 73.6
Cpa.g.sc171.15 Carica papaya HOM05D006526 ORTHO05D008496 6.4e-121 438.0 295 72.5
GSVIVG01033093001 Vitis vinifera HOM05D006526 ORTHO05D008496 6.4e-121 438.0 272 78.3
AT3G01920 Arabidopsis thaliana HOM05D006526 ORTHO05D008496 8.4e-121 437.6 313 69.0
TWI56G1218 Tripterygium wilfordii HOM05D006526 ORTHO05D008496 1.6e-119 433.3 271 77.5
THA.LOC104821121 Tarenaya hassleriana HOM05D006526 ORTHO05D008496 3.5e-119 432.2 280 74.6
AL3G10210 Arabidopsis lyrata HOM05D006526 ORTHO05D008496 7.8e-119 431.0 265 75.8
MELO3C014888.2 Cucumis melo HOM05D006526 ORTHO05D008496 1.0e-118 430.6 297 71.4
A01p25030 Brassica napus HOM05D006526 ORTHO05D008496 1.3e-118 430.3 280 72.9
Aa31LG5G11040 Aethionema arabicum HOM05D006526 ORTHO05D008496 1.7e-118 429.9 287 71.4
FvH4_6g53521 Fragaria vesca HOM05D006526 ORTHO05D008496 1.7e-118 429.9 306 69.3
Gohir.D09G036900 Gossypium hirsutum HOM05D006526 ORTHO05D008496 2.3e-118 429.5 275 76.4
C01p31260 Brassica napus HOM05D006526 ORTHO05D008496 3.0e-118 429.1 280 72.5
Nn4g22325 Nelumbo nucifera HOM05D006526 ORTHO05D008496 3.0e-118 429.1 295 72.9
Gorai.006G042000 Gossypium raimondii HOM05D006526 ORTHO05D008496 3.9e-118 428.7 314 69.7
BraA01t02414Z Brassica rapa HOM05D006526 ORTHO05D008496 5.1e-118 428.3 280 72.5
Carub.0003s0016 Capsella rubella HOM05D006526 ORTHO05D008496 5.1e-118 428.3 270 73.7
BcaC09g49919 Brassica carinata HOM05D006526 ORTHO05D008496 1.1e-117 427.2 280 72.1
BolC1t03065H Brassica oleracea HOM05D006526 ORTHO05D008496 1.1e-117 427.2 280 72.1
BcaB05g22967 Brassica carinata HOM05D006526 ORTHO05D008496 1.5e-117 426.8 280 71.8
Hma1.2p1_1278F.1_g272280 Hydrangea macrophylla HOM05D006526 ORTHO05D008496 1.5e-117 426.8 304 70.1
CANSAT64G1234 Cannabis sativa HOM05D006526 ORTHO05D008496 5.6e-117 424.9 292 71.9
Sabra16G0211400 Salix brachista HOM05D006526 ORTHO05D008496 1.6e-116 423.3 302 70.9
RcHm_v2.0_Chr2g0175561 Rosa chinensis HOM05D006526 ORTHO05D008496 3.6e-116 422.2 306 68.6
Actinidia05903 Actinidia chinensis HOM05D006526 ORTHO05D008496 8.1e-116 421.0 288 71.9
Dinv33336 Davidia involucrata HOM05D006526 ORTHO05D008496 1.1e-115 420.6 315 66.7
Sopen02g038780 Solanum pennellii HOM05D006526 ORTHO05D008496 1.4e-115 420.2 272 74.3
Solyc02g094150.4 Solanum lycopersicum HOM05D006526 ORTHO05D008496 1.8e-115 419.9 272 74.3
Migut.K01466 Erythranthe guttata HOM05D006526 ORTHO05D008496 3.1e-115 419.1 306 67.0
Nitab4.5_0002050g0140 Nicotiana tabacum HOM05D006526 ORTHO05D008496 2.6e-114 416.0 262 74.8
CsaV3_3G027000 Cucumis sativus L. HOM05D006526 ORTHO05D008496 7.6e-114 414.5 287 70.7
Prupe.3G306300 Prunus persica HOM05D006526 ORTHO05D008496 7.6e-114 414.5 302 71.2
Sp3g00170 Schrenkiella parvula HOM05D006526 ORTHO05D008496 9.9e-114 414.1 280 70.4
Thhalv10000573m.g Eutrema salsugineum HOM05D006526 ORTHO05D008496 2.2e-113 412.9 287 70.4
Lalb_Chr14g0363401 Lupinus albus HOM05D006526 ORTHO05D008496 3.8e-113 412.1 279 69.9
Rhsim10G0006300 Rhododendron simsii HOM05D006526 ORTHO05D008496 3.8e-113 412.1 283 72.4
Actinidia36203 Actinidia chinensis HOM05D006526 ORTHO05D008496 4.9e-113 411.8 262 75.2
Oeu005097.1 Olea europaea HOM05D006526 ORTHO05D008496 1.1e-112 410.6 258 76.0
ClCG05G013530 Citrullus lanatus HOM05D006526 ORTHO05D008496 1.9e-112 409.8 272 73.9
MD09G1010800 Malus domestica HOM05D006526 ORTHO05D008496 2.4e-112 409.5 291 69.8
CAN.G473.100 Capsicum annuum HOM05D006526 ORTHO05D008496 4.2e-112 408.7 274 71.9
Cc07_g00840 Coffea canephora HOM05D006526 ORTHO05D008496 4.2e-112 408.7 293 67.9
Glyma.19G091200 Glycine max HOM05D006526 ORTHO05D008496 5.4e-112 408.3 303 68.0
MSTRG.3258 Avicennia marina HOM05D006526 ORTHO05D008496 9.3e-112 407.5 266 72.9
Phvul.001G093500 Phaseolus vulgaris HOM05D006526 ORTHO05D008496 9.3e-112 407.5 270 73.0
Cfa007227 Carpinus fangiana HOM05D006526 ORTHO05D008496 1.2e-111 407.1 268 75.0
vmacro05958 Vaccinium macrocarpon HOM05D006526 ORTHO05D008496 2.7e-111 406.0 271 71.2
Lj1g0010270 Lotus japonicus HOM05D006526 ORTHO05D008496 5.1e-110 401.7 266 74.1
Peaxi162Scf00420g00560 Petunia axillaris HOM05D006526 ORTHO05D008496 8.7e-110 401.0 307 66.1
CARHR075020 Cardamine hirsuta HOM05D006526 ORTHO05D008496 4.3e-109 398.7 280 70.4
arahy.Tifrunner.gnm1.ann1.4N5YWB Arachis hypogaea HOM05D006526 ORTHO05D008496 7.3e-109 397.9 296 66.2
arahy.Tifrunner.gnm1.ann1.C96CVE Arachis hypogaea HOM05D006526 ORTHO05D008496 7.3e-109 397.9 296 66.2
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 1.6e-108 396.7 312 65.1
ATR0561G126 Amborella trichopoda HOM05D006526 ORTHO05D008496 1.1e-107 394.0 252 74.2
Aqoxy3G01551 Aquilegia oxysepala HOM05D006526 ORTHO05D008496 1.8e-107 393.3 257 72.0
SalBow7G1947 Salvia bowleyana HOM05D006526 ORTHO05D008496 3.1e-107 392.5 351 59.3
unitig_88.g27695 Utricularia gibba HOM05D006526 ORTHO05D008496 1.2e-106 390.6 257 70.4
SGA_v2.0_scaffold47G17596 Striga asiatica HOM05D006526 ORTHO05D008496 1.5e-106 390.2 321 62.0
Psat3g163920 Pisum sativum HOM05D006526 ORTHO05D008496 4.9e-105 385.2 270 70.0
Atru.chr6.2570 Acer truncatum HOM05D006526 ORTHO05D008496 8.4e-105 384.4 273 70.7
Lsat_1_v5_gn_2_93080 Lactuca sativa HOM05D006526 ORTHO05D008496 8.4e-105 384.4 282 64.9
CDE05G2481 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 7.1e-104 381.3 265 68.3
ECA238G1207 Erigeron canadensis HOM05D006526 ORTHO05D008496 7.1e-104 381.3 298 62.1
AUR62003516 Chenopodium quinoa HOM05D006526 ORTHO05D008496 7.9e-103 377.9 297 64.0
PSO478G2106 Papaver somniferum HOM05D006526 ORTHO05D008496 1.8e-102 376.7 270 68.1
PSO017G5829 Papaver somniferum HOM05D006526 ORTHO05D008496 2.3e-102 376.3 270 67.8
Ah.03g147500 Amaranthus hybridus HOM05D006526 ORTHO05D008496 3.0e-102 375.9 231 75.3
AUR62017828 Chenopodium quinoa HOM05D006526 ORTHO05D008496 3.9e-102 375.6 305 62.3
HanXRQChr14g0450751 Helianthus annuus HOM05D006526 ORTHO05D008496 8.7e-102 374.4 298 61.1
Nitab4.5_0010204g0040 Nicotiana tabacum HOM05D006526 ORTHO05D008496 5.8e-98 361.7 243 71.6
Os08g0531300 Oryza sativa ssp. japonica HOM05D006526 ORTHO05D008496 1.9e-96 356.7 258 65.9
Hund04346 Selenicereus undatus HOM05D006526 ORTHO05D008496 5.5e-96 355.1 318 56.6
Zm00001eb175140 Zea mays HOM05D006526 ORTHO05D008496 4.3e-93 345.5 276 61.2
CDE06G2358 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 6.2e-92 341.7 249 66.3
AagrBONN_evm.TU.Sc2ySwM_228.1921 Anthoceros agrestis HOM05D006526 ORTHO05D008496 3.1e-91 339.3 257 63.4
Gohir.A09G035700 Gossypium hirsutum HOM05D006526 ORTHO05D008496 9.0e-91 337.8 314 59.2
MBI11_g23476_MAGBIO Magnolia biondii HOM05D006526 ORTHO05D008496 2.0e-90 336.7 249 67.1
Pp3c2_22020 Physcomitrium patens HOM05D006526 ORTHO05D008496 1.0e-89 334.3 279 57.7
Sed0022734 Sechium edule HOM05D006526 ORTHO05D008496 8.4e-89 331.3 198 79.3
Haze_14876 Corylus avellana HOM05D006526 ORTHO05D008496 1.9e-88 330.1 271 63.8
CSS0009464 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 2.5e-85 319.7 203 78.3
TPR.G14866 Trifolium pratense HOM05D006526 ORTHO05D008496 9.7e-85 317.8 296 57.1
Sc16g0003120 Simmondsia chinensis HOM05D006526 ORTHO05D008496 5.0e-81 305.4 182 79.1
SMO137G0097 Selaginella moellendorffii HOM05D006526 ORTHO05D008496 3.2e-80 302.8 316 50.3
QL02p071425 Quercus lobata HOM05D006526 ORTHO05D008496 6.7e-78 295.0 180 79.4
VMungo1383G1669 Vigna mungo HOM05D006526 ORTHO05D008496 1.1e-77 294.3 194 72.2
PGSC0003DMG400020254 Solanum tuberosum HOM05D006526 ORTHO05D008496 9.1e-75 284.6 167 76.6
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 2.0e-74 283.5 306 52.6
DCAR_000965 Daucus carota HOM05D006526 ORTHO05D008496 8.5e-73 278.1 179 72.6
TAR629G1757 Trochodendron aralioides HOM05D006526 ORTHO05D008496 2.7e-71 273.1 181 73.5
Ca_12965_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 1.4e-70 270.8 212 64.2
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 3.0e-70 269.6 225 63.6
FAN05G0398 Fragaria x ananassa HOM05D002875 ORTHO05D003215 6.7e-70 268.5 236 59.7
BcaB05g22970 Brassica carinata HOM05D006526 ORTHO05D008496 3.7e-60 236.1 150 73.3
Glyma.16G056500 Glycine max HOM05D006526 ORTHO05D008496 2.1e-55 220.3 158 69.6
Cre01.g015950 Chlamydomonas reinhardtii HOM05D006526 ORTHO05D008496 3.1e-51 206.5 264 44.7
Medtr7g034590 Medicago truncatula HOM05D006526 ORTHO05D008496 7.7e-50 201.8 229 48.9
MCO14G032 Micromonas commoda HOM05D006526 ORTHO05D008496 1.8e-46 190.7 231 42.4
ECA236G2817 Erigeron canadensis HOM05D006526 ORTHO05D008496 5.2e-38 162.5 141 55.3
Glyma.16G056450 Glycine max HOM05D006526 ORTHO05D008496 1.3e-33 147.9 104 71.2
QL02p071428 Quercus lobata HOM05D006526 ORTHO05D008496 1.9e-32 144.1 106 67.0
FAN02G2201 Fragaria x ananassa HOM05D002323 ORTHO05D002470 5.6e-32 142.5 150 54.0
CDE05G0752 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 1.9e-27 127.5 93 65.6
Medtr6g045607 Medicago truncatula HOM05D006526 ORTHO05D008496 3.3e-24 116.7 73 74.0
CDE05G3548 Ceratophyllum demersum HOM05D006526 ORTHO05D008496 8.1e-23 112.1 73 69.9
CSS0005086 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 9.8e-21 105.1 82 68.3
EL10Ac8g19274 Beta vulgaris HOM05D006526 ORTHO05D008496 7.3e-16 89.0 68 64.7
BraA06t24956Z Brassica rapa HOM05D006526 ORTHO05D024464 9.5e-16 88.6 101 47.5
Medtr6g045617 Medicago truncatula HOM05D006526 ORTHO05D008496 9.5e-16 88.6 60 68.3
Ca_12964_v3 Cicer arietinum L. HOM05D006526 ORTHO05D008496 2.1e-15 87.4 70 64.3
C08p24000 Brassica napus HOM05D006526 ORTHO05D024464 3.6e-15 86.7 91 51.6
BcaB05g22969 Brassica carinata HOM05D006526 ORTHO05D008496 1.8e-14 84.3 55 74.5
CSS0022358 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 6.8e-14 82.4 54 68.5
CSS0047032 Camellia sinensis var. sinensis HOM05D006526 ORTHO05D008496 3.4e-13 80.1 55 65.5
BcaC07g39377 Brassica carinata HOM05D006526 ORTHO05D024464 8.4e-12 75.5 86 51.2
PSO339G4039 Papaver somniferum HOM05D004609 ORTHO05D005537 4.6e-10 69.7 205 29.8
BolC8t50022H Brassica oleracea HOM05D006526 ORTHO05D024464 2.3e-09 67.4 52 61.5
PSO063G6287 Papaver somniferum HOM05D004609 ORTHO05D005537 3.0e-09 67.0 206 29.6
Aqoxy3G03284 Aquilegia oxysepala HOM05D004609 ORTHO05D005537 5.1e-09 66.2 210 30.0
ECA248G0132 Erigeron canadensis HOM05D004609 ORTHO05D005537 1.1e-08 65.1 233 29.6
A06p18730 Brassica napus HOM05D006526 ORTHO05D024464 1.5e-08 64.7 82 45.1
CDE04G1482 Ceratophyllum demersum HOM05D006526 ORTHO05D003215 2.5e-08 63.9 64 53.1
PSO017G0942 Papaver somniferum HOM05D004609 ORTHO05D005537 5.6e-08 62.8 205 28.3
QL01p022329 Quercus lobata HOM05D004609 ORTHO05D005537 9.6e-08 62.0 203 30.0
Zm00001eb007760 Zea mays HOM05D004609 ORTHO05D005537 2.1e-07 60.8 208 28.8
QL06p007766 Quercus lobata HOM05D006526 ORTHO05D008496 3.6e-07 60.1 41 65.9
CSS0023307 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 8.1e-07 58.9 206 29.1
CSS0022919 Camellia sinensis var. sinensis HOM05D004609 ORTHO05D005537 3.1e-06 57.0 206 28.6
Rhsim13G0094100 Rhododendron simsii HOM05D004609 ORTHO05D005537 8.9e-06 55.5 206 28.6


User provided reference genes

Program Settings