Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 4.2e-303 1043.9 526 100.0
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 3.4e-220 768.5 509 73.9
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 3.4e-220 768.5 514 73.9
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 7.6e-220 767.3 522 72.4
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 1.3e-219 766.5 511 73.4
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 4.9e-219 764.6 509 74.1
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 1.4e-218 763.1 510 73.7
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 1.4e-218 763.1 496 75.4
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 7.1e-218 760.8 515 72.6
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 1.0e-216 756.9 529 71.6
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 3.9e-216 755.0 515 71.3
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 5.1e-216 754.6 527 70.0
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 6.7e-216 754.2 512 73.0
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 9.6e-215 750.4 499 72.3
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 1.6e-214 749.6 511 71.6
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 6.2e-214 747.7 507 70.2
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 4.0e-213 745.0 518 71.8
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 3.4e-212 741.9 506 72.1
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 5.8e-212 741.1 512 72.5
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 7.6e-212 740.7 507 69.8
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 7.6e-212 740.7 506 72.9
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 4.9e-211 738.0 506 71.3
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 4.9e-211 738.0 510 71.4
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.1e-210 736.9 506 71.3
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 1.4e-210 736.5 460 75.0
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 2.5e-210 735.7 510 73.1
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 2.5e-210 735.7 510 73.3
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 1.6e-209 733.0 515 73.0
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 4.6e-209 731.5 466 74.9
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 6.0e-209 731.1 460 77.2
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 6.0e-209 731.1 465 73.8
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 3.0e-208 728.8 473 73.4
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 5.1e-208 728.0 504 71.0
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 8.7e-208 727.2 524 68.9
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 1.1e-207 726.9 459 73.9
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 3.3e-207 725.3 515 69.1
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 5.7e-207 724.5 521 70.4
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 1.6e-206 723.0 459 73.4
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 2.1e-206 722.6 458 74.5
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 1.4e-205 719.9 501 69.5
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 6.9e-205 717.6 440 76.1
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 1.7e-203 713.0 441 75.5
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 2.2e-203 712.6 456 73.9
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 3.8e-203 711.8 472 73.1
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 6.5e-203 711.1 459 73.2
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 8.4e-203 710.7 505 68.5
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 8.4e-203 710.7 515 68.3
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 8.4e-203 710.7 511 68.7
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 3.2e-202 708.8 499 70.3
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 9.3e-202 707.2 511 68.5
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 1.2e-201 706.8 505 68.1
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 2.1e-201 706.1 463 72.1
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 2.1e-201 706.1 454 72.0
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 2.7e-201 705.7 495 69.5
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 3.5e-201 705.3 505 67.7
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 2.3e-200 702.6 507 67.5
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 5.1e-200 701.4 444 72.7
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 1.1e-199 700.3 448 73.0
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 7.4e-199 697.6 519 68.0
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 2.2e-198 696.0 471 71.1
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.8e-198 695.7 519 67.8
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 3.7e-198 695.3 535 65.4
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 4.8e-198 694.9 460 71.3
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 6.3e-198 694.5 516 66.7
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 2.4e-197 692.6 479 69.7
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 2.6e-196 689.1 515 65.8
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 2.6e-196 689.1 457 71.3
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 5.9e-196 688.0 524 66.8
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 1.0e-195 687.2 489 68.5
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 6.1e-193 677.9 531 65.2
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.0e-192 677.2 529 64.5
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 1.3e-190 670.2 482 66.6
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 1.3e-190 670.2 506 66.0
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 3.4e-188 662.1 462 68.2
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 1.3e-187 660.2 511 66.3
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 6.5e-187 657.9 446 71.1
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 8.5e-187 657.5 511 65.4
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 1.4e-184 650.2 514 63.6
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 3.5e-180 635.6 419 71.4
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 1.9e-178 629.8 410 74.1
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 5.5e-178 628.2 458 65.9
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 2.7e-177 625.9 488 61.5
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 1.8e-176 623.2 441 66.0
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 2.6e-175 619.4 419 70.6
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 5.7e-175 618.2 466 63.1
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 8.0e-169 597.8 514 60.3
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 2.3e-168 596.3 494 62.1
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 8.6e-155 551.2 524 58.4
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 1.3e-150 537.3 461 54.2
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 2.4e-149 533.1 469 54.4
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 2.9e-142 509.6 333 73.3
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 8.3e-142 508.1 364 68.7
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 2.4e-141 506.5 329 75.7
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 3.0e-139 499.6 315 75.6
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 2.3e-136 490.0 443 51.5
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 3.3e-130 469.5 340 68.5
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 4.6e-124 449.1 411 56.2
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 1.1e-117 427.9 272 75.7
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 7.1e-117 425.2 385 51.9
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 1.5e-111 407.5 309 61.8
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 6.2e-105 385.6 404 48.0
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 6.9e-104 382.1 296 67.6
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 2.6e-95 353.6 388 49.5
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 1.6e-92 344.4 249 67.5
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 4.1e-88 329.7 280 61.4
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 7.4e-82 308.9 223 68.2
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 4.8e-81 306.2 502 38.0
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 1.4e-75 288.1 215 65.1
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 3.1e-64 250.4 508 33.1
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 1.3e-54 218.4 127 76.4
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 3.5e-39 167.2 446 30.9
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 5.6e-37 159.8 135 57.8
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 2.8e-28 131.0 87 71.3
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 3.6e-28 130.6 91 73.6
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 6.8e-27 126.3 381 27.0
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.8e-19 101.7 84 60.7
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 1.2e-18 99.0 399 26.1
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 7.5e-18 96.3 73 58.9
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 3.7e-17 94.0 65 67.7
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 1.4e-16 92.0 171 31.6
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 3.2e-16 90.9 107 51.4
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 1.2e-15 89.0 97 53.6
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.6e-12 78.6 78 55.1
FAN18G4156 Fragaria x ananassa HOM05D005888 ORTHO05D045398 5.8e-10 70.1 62 56.5
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 5.8e-10 70.1 84 44.0
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 3.8e-09 67.4 32 78.1
arahy.Tifrunner.gnm1.ann1.3FLP3Q Arachis hypogaea HOM05D005888 ORTHO05D007791 6.0e-07 60.1 36 66.7


User provided reference genes

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