Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 2527.7 1284 100.0
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 1621.7 1269 63.9
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 1585.1 1266 63.0
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 1582.0 1268 62.9
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 1556.6 1266 61.7
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 1554.7 1267 63.0
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 1539.2 1269 61.7
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 1539.2 1294 61.2
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 1539.2 1266 61.5
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 1535.0 1269 61.3
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 1533.5 1263 62.1
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 1528.8 1268 60.9
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1526.1 1265 61.2
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 1523.5 1275 60.4
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 1522.3 1264 61.5
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1518.8 1266 61.1
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 1497.6 1269 60.5
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 1492.2 1264 59.7
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1479.9 1270 59.9
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 1476.8 1265 59.9
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 1460.3 1263 59.5
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 1455.3 1348 56.5
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 1444.1 1271 58.3
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1440.2 1264 59.0
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 1432.9 1264 58.0
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 1428.3 1264 58.9
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 1426.4 1271 59.3
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 1423.7 1264 58.1
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1422.9 1267 58.1
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 1422.9 1264 58.1
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 1421.4 1263 57.2
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 1418.7 1272 57.5
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 1418.3 1264 57.6
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1409.4 1267 57.6
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 1401.3 1263 56.6
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 1400.6 1267 57.1
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 1397.5 1274 57.4
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1395.2 1267 57.1
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 1393.6 1270 57.5
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 1393.6 1468 51.2
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1386.3 1267 57.1
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1384.0 1263 55.7
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 1378.6 1277 57.2
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 1376.3 1263 56.1
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 1371.7 1276 56.9
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1363.2 1276 54.9
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1363.2 1276 54.7
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 1363.2 1276 54.7
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 1362.1 1323 55.0
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1360.5 1276 55.0
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 1360.5 1276 55.0
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 1360.1 1274 56.2
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1357.8 1276 54.9
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 1355.9 1265 55.3
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 1354.0 1267 55.6
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 1353.6 1265 54.8
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 1352.4 1265 55.3
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 1351.3 1272 55.3
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 1349.0 1265 54.7
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1346.3 1275 55.8
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 1343.2 1266 55.6
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 1340.9 1265 54.6
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 1340.1 1277 54.3
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 1337.8 1266 54.8
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 1331.2 1275 54.5
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1327.8 1274 55.0
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 1319.7 1265 53.4
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1309.7 1265 53.1
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 1308.5 1563 47.1
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1288.5 1262 52.8
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 1269.6 1267 53.5
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 1268.4 1272 55.1
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1255.4 985 62.9
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1244.2 1263 52.3
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1244.2 1270 51.7
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1230.7 1302 51.3
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1203.7 1082 56.3
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1203.3 1264 51.3
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1190.6 1280 49.3
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1148.3 1280 49.1
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.5e-306 1056.6 924 59.4
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 2.5e-301 1039.3 1272 44.7
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 2.6e-274 949.5 879 56.0
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 3.0e-246 856.3 974 47.3
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 8.3e-244 848.2 1330 39.3
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 9.2e-235 818.1 936 46.5
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 1.6e-226 790.8 1281 37.6
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 1.9e-216 757.3 1309 36.1
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.3e-196 691.4 783 47.4
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 9.3e-187 658.7 1371 33.8
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 2.1e-183 647.5 801 45.1
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 7.4e-176 622.5 920 41.7
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 3.4e-173 613.6 775 44.4
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.2e-170 605.1 581 52.8
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 4.3e-107 394.0 384 51.0
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 1.9e-91 342.0 389 46.5
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 2.6e-88 331.6 352 48.3
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 2.1e-85 322.0 279 57.3
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 1.3e-82 312.8 346 48.0
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 1.0e-76 293.1 297 52.9
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 6.9e-65 253.8 275 44.4
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 3.0e-60 238.4 373 38.9
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 4.2e-54 218.0 295 46.8
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 9.3e-54 216.9 213 51.2
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 1.2e-40 173.3 130 66.2
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 8.5e-39 167.2 155 60.6
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 2.7e-37 162.2 139 60.4
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 3.9e-36 158.3 290 34.5
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 9.1e-33 147.1 148 53.4
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 4.2e-30 138.3 295 31.2
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 1.3e-26 126.7 93 64.5
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.4e-25 123.2 146 50.0
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 4.1e-25 121.7 289 33.2
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 7.0e-25 120.9 194 36.6
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 2.2e-23 115.9 99 58.6
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 3.8e-23 115.2 132 44.7
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 5.0e-23 114.8 132 42.4
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 1.2e-19 103.6 145 43.4
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 3.7e-18 98.6 81 59.3
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.3e-15 90.1 70 57.1
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 5.0e-15 88.2 99 43.4
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 8.6e-15 87.4 223 30.0
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 2.1e-13 82.8 72 55.6
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 4.0e-12 78.6 88 47.7
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 6.8e-12 77.8 74 44.6
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 6.8e-12 77.8 74 44.6
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 1.5e-11 76.6 74 43.2
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 1.7e-10 73.2 83 47.0
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 1.4e-09 70.1 121 32.2
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 1.2e-08 67.0 119 31.9
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 3.8e-07 62.0 74 41.9
Actinidia27518 Actinidia chinensis HOM05D001993 ORTHO05D030912 8.6e-07 60.8 45 57.8
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 1.1e-06 60.5 51 51.0
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 1.5e-06 60.1 122 30.3
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 1.9e-06 59.7 69 40.6
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 4.3e-06 58.5 104 33.7


User provided reference genes

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