Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 9.4e-121 436.8 209 100.0
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 6.1e-88 327.8 197 77.2
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 2.0e-86 322.8 201 76.1
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 4.1e-84 315.1 201 72.6
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 7.0e-84 314.3 199 75.4
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 2.7e-83 312.4 210 71.0
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 7.7e-83 310.8 198 72.7
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 2.9e-82 308.9 192 74.5
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 2.9e-82 308.9 201 71.6
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 5.0e-82 308.1 196 73.5
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 5.0e-82 308.1 201 73.1
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 6.6e-82 307.8 195 72.3
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 9.5e-81 303.9 196 75.5
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 1.6e-80 303.1 181 75.7
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 1.6e-80 303.1 198 72.2
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 2.8e-80 302.4 184 74.5
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 3.6e-80 302.0 193 72.5
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 3.6e-80 302.0 193 72.5
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 3.6e-80 302.0 202 69.8
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 3.6e-80 302.0 200 71.0
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 3.6e-80 302.0 200 71.0
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 4.7e-80 301.6 184 76.1
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 1.4e-79 300.1 190 73.2
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 1.8e-79 299.7 197 71.1
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 2.3e-79 299.3 189 74.1
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 3.0e-79 298.9 194 71.6
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 4.0e-79 298.5 201 69.2
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 5.2e-79 298.1 211 71.1
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 6.8e-79 297.7 191 72.8
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 8.9e-79 297.4 191 71.7
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 1.2e-78 297.0 184 73.9
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 1.5e-78 296.6 209 66.0
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 2.6e-78 295.8 194 70.1
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 3.4e-78 295.4 177 78.5
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 4.4e-78 295.0 175 77.7
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 7.5e-78 294.3 192 70.8
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 9.8e-78 293.9 194 70.1
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 9.8e-78 293.9 182 74.2
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 1.7e-77 293.1 191 71.2
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 2.2e-77 292.7 178 77.0
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 2.2e-77 292.7 202 69.3
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 1.1e-76 290.4 191 69.6
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 1.4e-76 290.0 198 70.2
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 1.4e-76 290.0 183 71.0
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 1.8e-76 289.7 202 69.3
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 1.8e-76 289.7 193 73.1
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 1.8e-76 289.7 192 70.8
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 1.8e-76 289.7 194 70.1
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 2.4e-76 289.3 196 68.9
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 2.4e-76 289.3 170 76.5
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 3.1e-76 288.9 198 70.2
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 3.1e-76 288.9 199 67.8
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 4.1e-76 288.5 190 71.6
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 4.1e-76 288.5 201 68.7
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 5.4e-76 288.1 203 66.0
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 5.4e-76 288.1 204 65.7
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 5.4e-76 288.1 190 71.6
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 7.0e-76 287.7 198 67.2
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 1.2e-75 287.0 201 69.2
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 2.0e-75 286.2 194 69.1
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 2.0e-75 286.2 195 70.3
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 2.0e-75 286.2 205 68.8
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 3.5e-75 285.4 190 68.4
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 3.5e-75 285.4 195 68.2
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 4.5e-75 285.0 196 70.4
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 1.3e-74 283.5 184 72.8
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 2.3e-74 282.7 190 70.5
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 2.3e-74 282.7 179 73.2
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 3.9e-74 282.0 172 74.4
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 5.0e-74 281.6 198 68.7
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 5.0e-74 281.6 198 68.7
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 8.6e-74 280.8 190 70.5
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.9e-73 279.6 197 68.5
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 2.5e-73 279.3 190 70.0
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 4.3e-73 278.5 193 68.4
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 4.3e-73 278.5 194 65.5
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 4.3e-73 278.5 168 75.6
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.2e-72 276.9 194 64.9
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.4e-71 273.5 201 64.2
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 1.4e-71 273.5 197 65.5
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 1.4e-71 273.5 196 65.8
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 1.8e-71 273.1 189 69.3
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 5.2e-71 271.6 181 67.4
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 6.8e-71 271.2 179 68.7
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 1.2e-70 270.4 178 66.9
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 2.0e-70 269.6 197 64.0
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 2.6e-70 269.2 208 64.9
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 3.4e-70 268.9 200 64.5
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 4.4e-70 268.5 165 74.5
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 4.4e-70 268.5 194 65.5
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 1.3e-69 266.9 166 75.3
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 2.2e-69 266.2 178 70.2
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 1.4e-68 263.5 164 71.3
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 2.4e-68 262.7 178 68.5
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 5.4e-68 261.5 203 63.5
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.7e-67 259.2 192 63.0
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 2.7e-67 259.2 200 61.5
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 3.5e-67 258.8 192 65.6
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 7.8e-67 257.7 187 67.4
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 1.0e-66 257.3 190 64.7
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.7e-66 256.5 192 62.5
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 1.7e-66 256.5 192 62.5
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 3.0e-66 255.8 191 63.9
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 5.0e-66 255.0 204 59.3
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 8.6e-66 254.2 181 65.2
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 1.5e-65 253.4 178 65.7
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 9.5e-65 250.8 180 66.1
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 2.1e-64 249.6 146 75.3
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 8.0e-64 247.7 200 59.5
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 1.2e-62 243.8 201 58.2
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 1.2e-62 243.8 201 58.2
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 4.4e-62 241.9 201 58.2
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 5.8e-62 241.5 201 57.7
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 2.2e-61 239.6 153 72.5
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 1.9e-60 236.5 166 63.3
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 2.7e-59 232.6 299 44.5
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 5.8e-54 214.9 190 55.8
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 3.7e-53 212.2 133 69.9
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 3.7e-53 212.2 137 75.9
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 6.4e-53 211.5 138 76.1
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 2.1e-51 206.5 195 51.8
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 2.7e-51 206.1 127 80.3
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 2.3e-50 203.0 171 53.2
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 5.1e-50 201.8 154 64.9
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 1.2e-43 180.6 165 52.1
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 4.9e-37 158.7 169 46.7
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.3e-34 150.6 189 42.3
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 3.0e-34 149.4 172 42.4
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 3.3e-33 146.0 168 48.8
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 3.3e-33 146.0 159 45.9
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 4.0e-31 139.0 168 44.6
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 1.3e-29 134.0 202 34.2
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 4.9e-29 132.1 79 72.2
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 4.3e-25 119.0 169 40.8
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 3.0e-18 96.3 61 63.9
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 6.7e-18 95.1 167 35.3
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 2.0e-14 83.6 62 61.3
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 2.6e-14 83.2 54 70.4
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 3.2e-12 76.3 61 67.2
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.0e-10 71.2 71 50.7


User provided reference genes

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