Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J02159 Eucalyptus grandis HOM05D007214 ORTHO05D008907 2.4e-62 242.3 150 100.0
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 9.6e-27 124.0 188 43.6
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 4.8e-26 121.7 188 48.4
CiPaw.04G066400 Carya illinoinensis HOM05D007214 ORTHO05D008907 6.5e-23 111.3 105 59.0
CANSAT64G0721 Cannabis sativa HOM05D007214 ORTHO05D008907 4.6e-21 105.1 100 59.0
Ciclev10012639m.g Citrus clementina HOM05D007214 ORTHO05D008907 3.9e-20 102.1 108 55.6
Nitab4.5_0001239g0030 Nicotiana tabacum HOM05D007214 ORTHO05D008907 5.1e-20 101.7 102 55.9
PSO063G2579 Papaver somniferum HOM05D007214 ORTHO05D008907 8.7e-20 100.9 147 44.9
AUR62030556 Chenopodium quinoa HOM05D007214 ORTHO05D008907 1.1e-19 100.5 191 37.2
Cpa.g.sc14.68 Carica papaya HOM05D007214 ORTHO05D008907 1.5e-19 100.1 74 68.9
FAN09G3859 Fragaria x ananassa HOM05D007214 ORTHO05D008907 1.5e-19 100.1 223 34.1
Aqoxy3G00863 Aquilegia oxysepala HOM05D007214 ORTHO05D008907 3.3e-19 99.0 139 47.5
Potri.001G350100 Populus trichocarpa HOM05D007214 ORTHO05D008907 9.7e-19 97.4 105 53.3
Sc11g0006840 Simmondsia chinensis HOM05D007214 ORTHO05D008907 8.2e-18 94.4 104 51.0
AUR62018331 Chenopodium quinoa HOM05D007214 ORTHO05D008907 1.4e-17 93.6 108 58.3
Sabra16G0229500 Salix brachista HOM05D007214 ORTHO05D008907 1.4e-17 93.6 74 67.6
Glyma.04G176300 Glycine max HOM05D007214 ORTHO05D008907 1.8e-17 93.2 103 51.5
Glyma.06G189000 Glycine max HOM05D007214 ORTHO05D008907 1.8e-17 93.2 106 50.0
Potri.017G074100 Populus trichocarpa HOM05D007214 ORTHO05D008907 3.1e-17 92.4 123 43.9
MBI15_g38192_MAGBIO Magnolia biondii HOM05D007214 ORTHO05D008907 6.9e-17 91.3 102 52.9
TAR629G0039 Trochodendron aralioides HOM05D000068 ORTHO05D008907 1.2e-16 90.5 74 60.8
CARHR292610 Cardamine hirsuta HOM05D007214 ORTHO05D008907 2.0e-16 89.7 74 62.2
DCAR_011179 Daucus carota HOM05D007214 ORTHO05D008907 7.6e-16 87.8 74 60.8
Ah.12g065280 Amaranthus hybridus HOM05D007214 ORTHO05D008907 1.7e-15 86.7 108 50.0
Sabra07G0063000 Salix brachista HOM05D007214 ORTHO05D008907 1.7e-15 86.7 72 62.5
Lalb_Chr10g0093331 Lupinus albus HOM05D007214 ORTHO05D008907 2.9e-15 85.9 102 47.1
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 5.0e-15 85.1 102 46.1
Psat3g038600 Pisum sativum HOM05D007214 ORTHO05D008907 5.0e-15 85.1 76 64.5
LjContig00155g0009682 Lotus japonicus HOM05D007214 ORTHO05D008907 1.1e-14 84.0 99 50.5
Duzib187G0634 Durio zibethinus HOM05D007214 ORTHO05D008907 1.4e-14 83.6 74 62.2
Ca_08472_v3 Cicer arietinum L. HOM05D007214 ORTHO05D008907 1.9e-14 83.2 125 44.8
TPR.G30823 Trifolium pratense HOM05D007214 ORTHO05D008907 1.9e-14 83.2 72 62.5
Medtr7g034275 Medicago truncatula HOM05D007214 ORTHO05D008907 2.5e-14 82.8 76 63.2
arahy.Tifrunner.gnm1.ann1.QRE12D Arachis hypogaea HOM05D007214 ORTHO05D008907 5.5e-14 81.6 77 61.0
arahy.Tifrunner.gnm1.ann1.X6PLX1 Arachis hypogaea HOM05D007214 ORTHO05D008907 5.5e-14 81.6 77 61.0
FAN02G1556 Fragaria x ananassa HOM05D007214 ORTHO05D008907 5.5e-14 81.6 204 32.8
SGA_v2.0_scaffold135G34803 Striga asiatica HOM05D007214 ORTHO05D008907 1.2e-13 80.5 217 28.6
Dinv33685 Davidia involucrata HOM05D007214 ORTHO05D008907 2.1e-13 79.7 60 71.7
Phvul.008G153000 Phaseolus vulgaris HOM05D007214 ORTHO05D008907 2.7e-13 79.3 106 44.3
FAN14G2712 Fragaria x ananassa HOM05D007214 ORTHO05D008907 3.0e-12 75.9 62 66.1
Nitab4.5_0002265g0100 Nicotiana tabacum HOM05D007214 ORTHO05D008907 3.0e-12 75.9 61 62.3
Zm00001eb280040 Zea mays HOM05D007214 ORTHO05D008907 8.8e-12 74.3 105 41.9
Manes.17G117200 Manihot esculenta HOM05D007214 ORTHO05D008907 1.5e-11 73.6 105 43.8
Thecc.04G070100 Theobroma cacao HOM05D007214 ORTHO05D008907 1.9e-11 73.2 68 61.8
TWI12G0421 Tripterygium wilfordii HOM05D007214 ORTHO05D008907 3.3e-11 72.4 46 80.4
CDE02G1584 Ceratophyllum demersum HOM05D007214 ORTHO05D008907 7.4e-11 71.2 114 34.2
SalBow1G8362 Salvia bowleyana HOM05D007214 ORTHO05D008907 7.4e-11 71.2 50 72.0
AT3G28370 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 1.3e-10 70.5 74 52.7
MELO3C030968.2 Cucumis melo HOM05D007214 ORTHO05D008907 1.7e-10 70.1 92 40.2
Nn4g22956 Nelumbo nucifera HOM05D007214 ORTHO05D008907 1.7e-10 70.1 60 61.7
Rhsim10G0029100 Rhododendron simsii HOM05D007214 ORTHO05D008907 2.8e-10 69.3 84 47.6
BcaC06g33744 Brassica carinata HOM05D007214 ORTHO05D008907 4.8e-10 68.6 74 51.4
A06p40600 Brassica napus HOM05D007214 ORTHO05D008907 4.8e-10 68.6 74 51.4
C07p37400 Brassica napus HOM05D007214 ORTHO05D008907 4.8e-10 68.6 74 51.4
BolC7t44250H Brassica oleracea HOM05D007214 ORTHO05D008907 4.8e-10 68.6 74 51.4
BraA06t26979Z Brassica rapa HOM05D007214 ORTHO05D008907 4.8e-10 68.6 74 51.4
CAN.G206.82 Capsicum annuum HOM05D007214 ORTHO05D008907 6.3e-10 68.2 53 67.9
A06p40570 Brassica napus HOM05D007214 ORTHO05D008907 1.1e-09 67.4 74 51.4
GSVIVG01032574001 Vitis vinifera HOM05D007214 ORTHO05D008907 1.8e-09 66.6 103 42.7
Os06g0235900 Oryza sativa ssp. japonica HOM05D007214 ORTHO05D008907 2.4e-09 66.2 107 40.2
SGA_v2.0_scaffold205G41734 Striga asiatica HOM05D007214 ORTHO05D008907 3.1e-09 65.9 48 68.8
Sp2g17170 Schrenkiella parvula HOM05D007214 ORTHO05D008907 4.1e-09 65.5 74 50.0
Cc07_g02800 Coffea canephora HOM05D007214 ORTHO05D008907 5.3e-09 65.1 54 63.0
unitig_746.g26578 Utricularia gibba HOM05D007214 ORTHO05D008907 9.1e-09 64.3 53 64.2
HPP92_010494 Vanilla planifolia HOM05D007214 ORTHO05D008907 2.0e-08 63.2 70 50.0
AL5G17980 Arabidopsis lyrata HOM05D007214 ORTHO05D008907 2.6e-08 62.8 68 52.9
Gohir.D07G223900 Gossypium hirsutum HOM05D007214 ORTHO05D008907 2.6e-08 62.8 63 58.7
Gorai.001G258300 Gossypium raimondii HOM05D007214 ORTHO05D008907 4.5e-08 62.0 63 58.7
Gohir.A07G216951 Gossypium hirsutum HOM05D007214 ORTHO05D008907 5.9e-08 61.6 63 57.1
QL02p079285 Quercus lobata HOM05D007214 ORTHO05D008907 5.9e-08 61.6 38 81.6
Sopen02g032170 Solanum pennellii HOM05D007214 ORTHO05D008907 5.9e-08 61.6 57 54.4
COL.COLO4_36999 Corchorus olitorius HOM05D007214 ORTHO05D008907 7.7e-08 61.2 38 81.6
Solyc02g087420.3 Solanum lycopersicum HOM05D007214 ORTHO05D008907 1.7e-07 60.1 53 56.6
Oeu060589.1 Olea europaea HOM05D007214 ORTHO05D008907 2.9e-07 59.3 40 75.0
Sed0019253 Sechium edule HOM05D007214 ORTHO05D008907 2.9e-07 59.3 59 55.9
PGSC0003DMG400001300 Solanum tuberosum HOM05D007214 ORTHO05D008907 2.9e-07 59.3 53 54.7
Sabra17G0065100 Salix brachista HOM05D007214 ORTHO05D008907 3.8e-07 58.9 97 37.1
MSTRG.23970 Avicennia marina HOM05D007214 ORTHO05D008907 5.0e-07 58.5 46 63.0
FvH4_6g49740 Fragaria vesca HOM05D007214 ORTHO05D008907 5.0e-07 58.5 40 75.0
MD09G1042000 Malus domestica HOM05D007214 ORTHO05D008907 8.5e-07 57.8 38 78.9
Carub.0005s0686 Capsella rubella HOM05D007214 ORTHO05D008907 1.9e-06 56.6 36 75.0
TAR629G1667 Trochodendron aralioides HOM05D000068 ORTHO05D000084 3.2e-06 55.8 40 65.0
Thhalv10004882m.g Eutrema salsugineum HOM05D007214 ORTHO05D008907 4.2e-06 55.5 36 75.0
THA.LOC104805424 Tarenaya hassleriana HOM05D007214 ORTHO05D008907 4.2e-06 55.5 36 75.0
Migut.H00870 Erythranthe guttata HOM05D007214 ORTHO05D008907 5.5e-06 55.1 40 65.0
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 9.4e-06 54.3 50 56.0


User provided reference genes

Program Settings