Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01506 Eucalyptus grandis HOM05D004795 ORTHO05D005518 6.2e-152 540.8 284 100.0
Cfa007915 Carpinus fangiana HOM05D004795 ORTHO05D005518 4.6e-54 215.7 233 59.2
CiPaw.03G062800 Carya illinoinensis HOM05D004795 ORTHO05D005518 1.1e-50 204.5 235 57.0
QL02p051034 Quercus lobata HOM05D004795 ORTHO05D005518 1.5e-49 200.7 212 58.5
QL12p016552 Quercus lobata HOM05D004795 ORTHO05D005518 1.5e-49 200.7 212 58.5
Prupe.3G143600 Prunus persica HOM05D004795 ORTHO05D005518 2.2e-48 196.8 214 60.7
TWI53G1522 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 8.4e-48 194.9 210 58.1
TWI77G0518 Tripterygium wilfordii HOM05D004795 ORTHO05D005518 8.4e-48 194.9 210 58.6
MD09G1253700 Malus domestica HOM05D004795 ORTHO05D005518 1.9e-47 193.7 216 59.3
Haze_14167 Corylus avellana HOM05D004795 ORTHO05D005518 2.4e-47 193.4 209 58.4
COL.COLO4_09348 Corchorus olitorius HOM05D004795 ORTHO05D005518 5.5e-47 192.2 216 60.2
MD17G1245500 Malus domestica HOM05D004795 ORTHO05D005518 9.3e-47 191.4 217 58.5
Sabra04G0081300 Salix brachista HOM05D004795 ORTHO05D005518 9.3e-47 191.4 215 60.5
Sabra17G0096100 Salix brachista HOM05D004795 ORTHO05D005518 1.3e-45 187.6 230 56.1
CiPaw.04G043000 Carya illinoinensis HOM05D004795 ORTHO05D005518 2.3e-45 186.8 237 54.4
Manes.02G069600 Manihot esculenta HOM05D004795 ORTHO05D005518 3.0e-45 186.4 211 60.2
Thecc.04G132300 Theobroma cacao HOM05D004795 ORTHO05D005518 5.1e-45 185.7 214 59.3
Potri.017G116100 Populus trichocarpa HOM05D004795 ORTHO05D005518 8.7e-45 184.9 231 55.0
Cpa.g.sc170.57 Carica papaya HOM05D004795 ORTHO05D005518 3.3e-44 183.0 228 54.4
Duzib133G0847 Durio zibethinus HOM05D004795 ORTHO05D005518 3.7e-43 179.5 212 56.1
CANSAT78G0274 Cannabis sativa HOM05D004795 ORTHO05D005518 1.8e-42 177.2 211 58.3
Duzib211G0180 Durio zibethinus HOM05D004795 ORTHO05D005518 5.3e-42 175.6 203 57.1
Manes.01G111300 Manihot esculenta HOM05D004795 ORTHO05D005518 1.5e-41 174.1 210 55.7
Atru.chr1.1662 Acer truncatum HOM05D004795 ORTHO05D005518 1.7e-40 170.6 205 59.0
Duzib138G0938 Durio zibethinus HOM05D004795 ORTHO05D005518 1.7e-40 170.6 212 53.8
ClCG05G012330 Citrullus lanatus HOM05D004795 ORTHO05D005518 8.4e-40 168.3 204 53.9
PGR004G2449 Punica granatum HOM05D004795 ORTHO05D005518 8.4e-40 168.3 215 54.9
Ciclev10012794m.g Citrus clementina HOM05D004795 ORTHO05D005518 2.1e-38 163.7 200 56.5
arahy.Tifrunner.gnm1.ann1.HZ9SBP Arachis hypogaea HOM05D001490 ORTHO05D005518 7.9e-38 161.8 233 48.5
Dinv33956 Davidia involucrata HOM05D001490 ORTHO05D001450 7.9e-38 161.8 186 60.2
Cc07_g08730 Coffea canephora HOM05D004795 ORTHO05D005518 6.7e-37 158.7 217 55.3
CsaV3_3G020240 Cucumis sativus L. HOM05D004795 ORTHO05D005518 2.5e-36 156.8 197 53.8
TAR629G1480 Trochodendron aralioides HOM05D004795 ORTHO05D005518 3.3e-36 156.4 201 52.7
Glyma.13G045200 Glycine max HOM05D004795 ORTHO05D005518 4.3e-36 156.0 220 52.3
Nitab4.5_0000912g0060 Nicotiana tabacum HOM05D004795 ORTHO05D005518 5.7e-36 155.6 213 53.5
VMungo0464G1679 Vigna mungo HOM05D004795 ORTHO05D005518 1.3e-35 154.5 222 51.4
Gohir.D11G325800 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.8e-35 152.5 227 49.8
VMungo1383G1737 Vigna mungo HOM05D004795 ORTHO05D005518 2.4e-34 150.2 210 53.3
CAN.G625.30 Capsicum annuum HOM05D004795 ORTHO05D005518 3.1e-34 149.8 213 53.1
Sopen02g030830 Solanum pennellii HOM05D004795 ORTHO05D005518 5.3e-34 149.1 203 53.7
TAR371G0696 Trochodendron aralioides HOM05D004795 ORTHO05D005518 6.9e-34 148.7 183 51.4
Gohir.D11G325700 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.2e-33 147.9 213 48.8
PGSC0003DMG402026390 Solanum tuberosum HOM05D004795 ORTHO05D005518 1.5e-33 147.5 203 53.7
MSTRG.3555 Avicennia marina HOM05D004795 ORTHO05D005518 2.0e-33 147.1 217 47.9
MELO3C023735.2 Cucumis melo HOM05D004795 ORTHO05D005518 3.4e-33 146.4 189 52.9
Phvul.008G007200 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 7.6e-33 145.2 203 53.2
DCAR_025909 Daucus carota HOM05D004795 ORTHO05D005518 1.7e-32 144.1 202 52.5
Sed0015257 Sechium edule HOM05D004795 ORTHO05D005518 3.8e-32 142.9 201 51.2
Glyma.19G049900 Glycine max HOM05D004795 ORTHO05D005518 8.5e-32 141.7 218 48.6
Gohir.D11G326300 Gossypium hirsutum HOM05D004795 ORTHO05D005518 1.4e-31 141.0 222 47.7
Oeu039734.1 Olea europaea HOM05D004795 ORTHO05D005518 1.4e-31 141.0 207 47.8
Glyma.08G366700 Glycine max HOM05D004795 ORTHO05D005518 2.5e-31 140.2 169 58.6
Oeu050378.1 Olea europaea HOM05D004795 ORTHO05D005518 3.2e-31 139.8 193 51.8
Phvul.004G066100 Phaseolus vulgaris HOM05D004795 ORTHO05D005518 3.2e-31 139.8 217 48.4
Rhsim10G0068600 Rhododendron simsii HOM05D004795 ORTHO05D005518 3.2e-31 139.8 210 50.0
PGR042G3836 Punica granatum HOM05D004795 ORTHO05D005518 7.2e-31 138.7 186 54.8
RcHm_v2.0_Chr2g0148201 Rosa chinensis HOM05D004795 ORTHO05D005518 1.6e-30 137.5 227 48.5
FAN02G3195 Fragaria x ananassa HOM05D004795 ORTHO05D005518 4.6e-30 136.0 208 50.0
THA.LOC104805574 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 4.6e-30 136.0 240 47.5
Migut.L00330 Erythranthe guttata HOM05D004795 ORTHO05D005518 7.9e-30 135.2 220 44.5
FAN05G2248 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.0e-29 134.8 211 49.3
Oeu016627.1 Olea europaea HOM05D004795 ORTHO05D005518 1.0e-29 134.8 193 50.8
Aa31LG9G17140 Aethionema arabicum HOM05D004795 ORTHO05D005518 3.0e-29 133.3 234 45.7
Lsat_1_v5_gn_4_154580 Lactuca sativa HOM05D004795 ORTHO05D005518 3.9e-29 132.9 205 47.3
Glyma.18G295700 Glycine max HOM05D004795 ORTHO05D005518 6.7e-29 132.1 179 54.2
Peaxi162Scf00394g00712 Petunia axillaris HOM05D004795 ORTHO05D005518 6.7e-29 132.1 175 54.9
Gohir.A11G163900 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.3e-28 129.8 199 48.7
FAN14G2363 Fragaria x ananassa HOM05D004795 ORTHO05D005518 7.4e-28 128.6 213 47.4
FAN14G5069 Fragaria x ananassa HOM05D004795 ORTHO05D005518 7.4e-28 128.6 213 47.4
Gorai.008G056400 Gossypium raimondii HOM05D004795 ORTHO05D005518 7.4e-28 128.6 174 50.0
Nn3g17899 Nelumbo nucifera HOM05D004795 ORTHO05D005518 9.7e-28 128.3 212 46.7
Gorai.007G182000 Gossypium raimondii HOM05D004795 ORTHO05D005518 1.3e-27 127.9 199 48.2
Lj2g0010000 Lotus japonicus HOM05D004795 ORTHO05D005518 2.2e-27 127.1 228 44.3
FvH4_6g36230 Fragaria vesca HOM05D004795 ORTHO05D005518 4.8e-27 125.9 211 46.0
Gohir.D12G053200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 6.3e-27 125.6 174 48.9
Gohir.A12G054400 Gossypium hirsutum HOM05D004795 ORTHO05D005518 2.4e-26 123.6 174 48.3
Hma1.2p1_1109F.1_g258120 Hydrangea macrophylla HOM05D004795 ORTHO05D005518 2.4e-26 123.6 208 48.6
BraA02t06447Z Brassica rapa HOM05D004795 ORTHO05D005518 3.1e-26 123.2 239 41.4
Ah.16g101690 Amaranthus hybridus HOM05D004795 ORTHO05D005518 4.1e-26 122.9 210 47.6
THA.LOC104822635 Tarenaya hassleriana HOM05D004795 ORTHO05D005518 4.1e-26 122.9 239 45.2
TAR622G0902 Trochodendron aralioides HOM05D004795 ORTHO05D005518 4.1e-26 122.9 210 46.7
Thhalv10019032m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 5.3e-26 122.5 232 44.8
Lj1g0003158 Lotus japonicus HOM05D004795 ORTHO05D005518 9.0e-26 121.7 196 48.5
Potri.004G098200 Populus trichocarpa HOM05D004795 ORTHO05D005518 9.0e-26 121.7 120 60.0
Sc11g0008370 Simmondsia chinensis HOM05D004795 ORTHO05D005518 1.2e-25 121.3 182 48.9
A04p11270 Brassica napus HOM05D004795 ORTHO05D005518 1.5e-25 120.9 239 43.9
BraA04t16787Z Brassica rapa HOM05D004795 ORTHO05D005518 1.5e-25 120.9 239 43.9
BolC4t26077H Brassica oleracea HOM05D004795 ORTHO05D005518 5.9e-25 119.0 239 43.5
FAN09G4185 Fragaria x ananassa HOM05D004795 ORTHO05D005518 1.3e-24 117.9 229 46.3
BcaB06g27183 Brassica carinata HOM05D004795 ORTHO05D005518 2.2e-24 117.1 233 45.1
BcaC02g09641 Brassica carinata HOM05D004795 ORTHO05D005518 2.9e-24 116.7 235 43.8
Ca_08078_v3 Cicer arietinum L. HOM05D004795 ORTHO05D005518 2.9e-24 116.7 187 49.2
C04p44990 Brassica napus HOM05D004795 ORTHO05D005518 8.5e-24 115.2 243 43.2
Thhalv10027906m.g Eutrema salsugineum HOM05D004795 ORTHO05D005518 1.1e-23 114.8 220 47.3
Sp5g21970 Schrenkiella parvula HOM05D004795 ORTHO05D005518 1.1e-23 114.8 235 44.7
CARHR214290 Cardamine hirsuta HOM05D004795 ORTHO05D005518 2.5e-23 113.6 216 44.9
Sp7g03720 Schrenkiella parvula HOM05D004795 ORTHO05D005518 5.5e-23 112.5 237 43.9
Lalb_Chr02g0158191 Lupinus albus HOM05D004795 ORTHO05D005518 1.2e-22 111.3 193 42.5
Aa31LG2G3430 Aethionema arabicum HOM05D004795 ORTHO05D005518 2.1e-22 110.5 235 42.1
BcaC03g14785 Brassica carinata HOM05D004795 ORTHO05D005518 2.1e-22 110.5 223 42.2
Lalb_Chr10g0091311 Lupinus albus HOM05D004795 ORTHO05D005518 2.1e-22 110.5 168 47.6
AL7G52500 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 4.6e-22 109.4 232 41.8
HanXRQChr11g0330661 Helianthus annuus HOM05D004795 ORTHO05D005518 6.1e-22 109.0 161 47.2
Nitab4.5_0004416g0090 Nicotiana tabacum HOM05D004795 ORTHO05D005518 7.9e-22 108.6 183 48.1
AT5G38300 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.0e-21 108.2 233 42.1
AT1G67035 Arabidopsis thaliana HOM05D004795 ORTHO05D005518 1.4e-21 107.8 192 45.3
BcaB05g24226 Brassica carinata HOM05D004795 ORTHO05D005518 1.4e-21 107.8 224 42.0
BolC2t08386H Brassica oleracea HOM05D004795 ORTHO05D005518 1.8e-21 107.5 221 41.6
AUR62043981 Chenopodium quinoa HOM05D004795 ORTHO05D005518 3.0e-21 106.7 262 38.2
C02p22330 Brassica napus HOM05D004795 ORTHO05D005518 2.6e-20 103.6 219 40.6
HanXRQChr11g0325401 Helianthus annuus HOM05D004795 ORTHO05D005518 2.6e-20 103.6 196 43.4
Carub.0002s1332 Capsella rubella HOM05D004795 ORTHO05D005518 3.3e-20 103.2 209 42.1
SGA_v2.0_scaffold115G32104 Striga asiatica HOM05D004795 ORTHO05D005518 1.3e-19 101.3 173 49.7
Gohir.D11G170200 Gossypium hirsutum HOM05D004795 ORTHO05D005518 4.8e-19 99.4 272 36.0
Medtr7g082230 Medicago truncatula HOM05D004795 ORTHO05D005518 1.1e-18 98.2 189 40.7
Carub.0005s1274 Capsella rubella HOM05D004795 ORTHO05D005518 1.4e-18 97.8 219 40.2
A07p33770 Brassica napus HOM05D004795 ORTHO05D005518 1.8e-18 97.4 221 39.4
TPR.G31528 Trifolium pratense HOM05D004795 ORTHO05D005518 1.8e-18 97.4 185 42.7
AL2G25370 Arabidopsis lyrata HOM05D004795 ORTHO05D005518 2.4e-18 97.1 187 42.8
AUR62023290 Chenopodium quinoa HOM05D004795 ORTHO05D005518 3.1e-18 96.7 296 33.4
Gorai.007G356700 Gossypium raimondii HOM05D004795 ORTHO05D005518 4.1e-18 96.3 193 40.9
BraA07t31003Z Brassica rapa HOM05D004795 ORTHO05D005518 5.3e-18 95.9 224 40.6
TPR.G32442 Trifolium pratense HOM05D004795 ORTHO05D005518 5.3e-18 95.9 321 31.5
AUR62009011 Chenopodium quinoa HOM05D004795 ORTHO05D005518 1.5e-17 94.4 300 33.3
Psat1g081000 Pisum sativum HOM05D004795 ORTHO05D005518 2.0e-17 94.0 262 32.8
CARHR059450 Cardamine hirsuta HOM05D004795 ORTHO05D005518 1.3e-16 91.3 180 41.1
Psat3g098240 Pisum sativum HOM05D004795 ORTHO05D005518 1.3e-16 91.3 179 41.9
MBI09_g36997_MAGBIO Magnolia biondii HOM05D004795 ORTHO05D005518 1.7e-16 90.9 171 44.4
Gorai.001G202200 Gossypium raimondii HOM05D004795 ORTHO05D005518 6.5e-16 89.0 140 50.7
BolC6t39123H Brassica oleracea HOM05D004795 ORTHO05D005518 2.5e-15 87.0 221 38.0
ECA232G0641 Erigeron canadensis HOM05D000072 ORTHO05D000026 5.5e-15 85.9 116 56.9
C06p43160 Brassica napus HOM05D004795 ORTHO05D005518 2.1e-14 84.0 226 38.1
Medtr6g018780 Medicago truncatula HOM05D004795 ORTHO05D005518 4.7e-14 82.8 109 54.1
Aqoxy3G00247 Aquilegia oxysepala HOM05D004795 ORTHO05D005518 1.4e-13 81.3 228 36.0
BcaNung06250 Brassica carinata HOM05D004795 ORTHO05D005518 3.0e-13 80.1 225 37.3
Solyc02g086140.2 Solanum lycopersicum HOM05D004795 ORTHO05D005518 3.9e-13 79.7 102 57.8
unitig_32.g11886 Utricularia gibba HOM05D004795 ORTHO05D005518 6.7e-13 79.0 182 40.1
Ah.06g188560 Amaranthus hybridus HOM05D004795 ORTHO05D005518 8.8e-13 78.6 164 40.9
Thecc.07G096700 Theobroma cacao HOM05D004795 ORTHO05D002259 5.7e-12 75.9 118 48.3
ATR0752G028 Amborella trichopoda HOM05D004795 ORTHO05D005518 1.1e-10 71.6 188 36.7
Gohir.D11G325975 Gossypium hirsutum HOM05D004795 ORTHO05D005518 3.1e-10 70.1 93 48.4
PSO532G0010 Papaver somniferum HOM05D004795 ORTHO05D005518 5.9e-09 65.9 146 37.7
SalBow5G0757 Salvia bowleyana HOM05D004795 ORTHO05D005518 1.3e-08 64.7 86 53.5
PSO541G1476 Papaver somniferum HOM05D004795 ORTHO05D005518 6.5e-08 62.4 157 35.7
unitig_748.g8746 Utricularia gibba HOM05D004795 ORTHO05D005518 1.1e-07 61.6 108 44.4
Actinidia15890 Actinidia chinensis HOM05D004795 ORTHO05D005518 1.5e-07 61.2 150 36.7
PSO541G4271 Papaver somniferum HOM05D004795 ORTHO05D005518 1.6e-06 57.8 155 33.5


User provided reference genes

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