Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 0.0e+00 1228.8 673 100.0
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 2.4e-178 629.8 696 50.7
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 1.5e-175 620.5 719 49.4
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 6.8e-173 611.7 672 51.6
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 5.8e-172 608.6 665 51.1
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 2.2e-171 606.7 689 50.8
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 3.7e-171 605.9 698 49.6
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 4.1e-170 602.4 606 54.0
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 2.1e-166 590.1 691 49.6
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 1.1e-165 587.8 678 49.6
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 3.1e-165 586.3 677 48.7
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 1.3e-163 580.9 679 48.0
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 7.1e-162 575.1 675 49.0
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 9.3e-162 574.7 676 48.7
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 2.1e-161 573.5 696 47.6
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 2.1e-161 573.5 589 51.3
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 1.3e-160 570.9 659 48.3
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 3.0e-160 569.7 670 47.6
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 3.9e-160 569.3 682 48.8
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 6.6e-160 568.5 704 48.3
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 6.6e-160 568.5 691 47.5
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 9.6e-159 564.7 646 49.2
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 2.8e-158 563.1 664 49.7
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 5.8e-156 555.4 599 51.4
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 3.8e-155 552.7 626 50.0
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 1.9e-154 550.4 617 50.6
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 4.2e-154 549.3 621 50.6
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 1.6e-153 547.4 619 49.4
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 4.6e-153 545.8 696 46.3
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 5.1e-152 542.3 697 47.1
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 8.7e-152 541.6 630 47.8
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 1.9e-151 540.4 614 49.7
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 1.2e-148 531.2 669 44.7
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 8.4e-147 525.0 684 44.9
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 1.1e-146 524.6 681 45.4
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 3.2e-146 523.1 655 47.6
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 4.2e-146 522.7 696 45.3
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 5.6e-143 512.3 669 45.9
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 2.1e-142 510.4 557 46.9
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 2.1e-142 510.4 624 46.5
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 8.1e-142 508.4 610 45.9
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 4.9e-139 499.2 538 50.7
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 1.1e-138 498.0 689 43.8
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 1.1e-138 498.0 530 50.8
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 2.7e-137 493.4 660 43.6
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 8.7e-136 488.4 665 44.5
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 1.1e-135 488.0 607 48.1
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 1.5e-135 487.6 655 43.4
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 5.3e-133 479.2 663 43.4
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 1.2e-132 478.0 623 43.7
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 2.6e-132 476.9 529 49.5
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 3.4e-132 476.5 683 43.6
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 2.9e-131 473.4 687 41.8
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 7.2e-130 468.8 539 50.3
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 1.6e-129 467.6 412 56.1
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 2.7e-129 466.8 509 48.7
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 2.7e-129 466.8 471 52.2
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 5.1e-128 462.6 412 55.1
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 3.4e-124 449.9 642 41.7
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 1.1e-122 444.9 602 43.9
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 2.7e-121 440.3 495 47.1
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 4.6e-121 439.5 555 47.6
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 6.1e-121 439.1 672 41.8
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 1.8e-120 437.6 532 45.9
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 3.9e-120 436.4 509 47.2
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 3.9e-120 436.4 619 40.4
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 2.5e-119 433.7 642 39.7
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 2.2e-118 430.6 630 39.7
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 8.2e-118 428.7 654 39.1
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 1.8e-117 427.6 529 44.0
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 2.4e-117 427.2 509 46.6
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 2.4e-117 427.2 551 45.7
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 6.9e-117 425.6 646 40.2
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 6.9e-117 425.6 646 40.2
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 2.0e-116 424.1 630 39.7
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 5.9e-116 422.5 593 41.1
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 1.0e-115 421.8 545 48.4
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 2.2e-115 420.6 593 41.0
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 8.5e-115 418.7 584 39.6
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 1.4e-114 417.9 432 50.9
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 2.3e-112 410.6 647 38.2
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 3.5e-108 396.7 426 50.5
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 2.9e-107 393.7 515 47.0
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 2.9e-107 393.7 632 37.2
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 1.2e-105 388.3 523 44.2
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 1.8e-101 374.4 558 43.4
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 2.5e-98 364.0 669 35.7
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 3.6e-97 360.1 365 50.4
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 8.8e-96 355.5 360 50.3
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.3e-94 351.7 286 58.4
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 1.8e-93 347.8 584 38.2
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 2.9e-91 340.5 607 36.7
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 3.0e-88 330.5 575 41.2
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 2.2e-86 324.3 478 44.4
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 5.0e-83 313.2 581 37.9
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 6.6e-83 312.8 245 60.8
Solyc03g045080.3 Solanum lycopersicum HOM05D002617 ORTHO05D009035 1.5e-79 301.6 447 42.3
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 1.2e-76 292.0 486 42.2
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 3.5e-76 290.4 249 55.8
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 5.2e-64 250.0 450 35.3
FAN02G3008 Fragaria x ananassa HOM05D002617 ORTHO05D009035 3.1e-48 197.6 408 37.3
CiPaw.09G170800 Carya illinoinensis HOM05D002617 ORTHO05D009035 3.1e-40 171.0 161 59.6
CANSAT56G3033 Cannabis sativa HOM05D002617 ORTHO05D009035 1.6e-36 158.7 388 34.8
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 6.7e-35 153.3 127 68.5
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 6.7e-35 153.3 127 68.5
vmacro05579 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 4.9e-30 137.1 234 45.3
MSTRG.23827 Avicennia marina HOM05D002617 ORTHO05D009035 7.9e-28 129.8 212 47.2
SMO116G0487 Selaginella moellendorffii HOM05D002617 ORTHO05D009035 5.1e-27 127.1 271 28.8
arahy.Tifrunner.gnm1.ann1.3A0B2Z Arachis hypogaea HOM05D002617 ORTHO05D009035 6.2e-25 120.2 165 45.5
CBR_g48653 Chara braunii HOM05D001394 ORTHO05D001237 5.8e-23 113.6 266 26.3
Lalb_Chr10g0092331 Lupinus albus HOM05D002617 ORTHO05D009035 7.9e-20 103.2 151 48.3
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.4e-16 91.7 59 71.2
Lalb_Chr10g0092301 Lupinus albus HOM05D002617 ORTHO05D009035 2.3e-11 75.1 66 48.5
Nn4g26093 Nelumbo nucifera HOM05D001650 ORTHO05D001592 8.2e-09 66.6 82 48.8
TAR629G1810 Trochodendron aralioides HOM05D004423 ORTHO05D005464 3.4e-07 61.2 42 66.7
TAR629G3114 Trochodendron aralioides HOM05D004526 ORTHO05D002794 1.0e-06 59.7 37 73.0


User provided reference genes

Program Settings