Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 1.7e-183 646.0 351 100.0
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 1.2e-115 420.6 354 67.5
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 2.2e-114 416.4 353 65.7
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 8.3e-114 414.5 353 66.0
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 7.1e-113 411.4 353 66.6
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 7.8e-112 407.9 353 65.7
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 1.0e-111 407.5 352 64.8
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.0e-111 406.0 353 65.4
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 5.1e-111 405.2 353 64.9
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 6.6e-111 404.8 351 64.7
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 4.3e-110 402.1 353 64.3
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 7.3e-110 401.4 351 63.8
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 1.2e-109 400.6 354 65.5
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 2.4e-108 396.4 353 63.5
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 4.0e-108 395.6 355 63.7
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 5.2e-108 395.2 351 63.8
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 8.9e-108 394.4 354 64.1
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 5.8e-107 391.7 352 62.8
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 1.4e-105 387.1 351 63.5
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.9e-105 386.7 352 63.1
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 2.4e-105 386.3 353 63.2
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 7.1e-105 384.8 351 62.1
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 7.1e-105 384.8 352 62.5
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 4.6e-104 382.1 352 62.5
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 1.5e-102 377.1 354 61.9
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 5.6e-102 375.2 354 61.3
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 7.3e-102 374.8 354 61.3
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.3e-101 374.0 352 61.4
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 2.1e-101 373.2 354 61.3
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 1.1e-100 370.9 367 59.9
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 4.0e-100 369.0 352 60.2
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 5.3e-100 368.6 353 61.2
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 2.0e-99 366.7 354 60.5
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 2.6e-99 366.3 355 60.0
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 5.8e-99 365.2 354 60.5
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 1.7e-98 363.6 355 58.0
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 2.2e-98 363.2 355 59.4
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 3.8e-98 362.5 353 59.2
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 6.4e-98 361.7 362 59.4
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 8.4e-98 361.3 367 59.4
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 1.1e-97 360.9 353 60.6
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 1.1e-97 360.9 351 59.0
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 1.1e-97 360.9 353 58.1
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 1.9e-97 360.1 362 58.8
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 2.4e-97 359.8 341 60.7
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 5.4e-97 358.6 353 61.2
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 9.3e-97 357.8 352 59.9
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.2e-96 357.5 352 59.7
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 2.7e-96 356.3 355 59.2
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 1.0e-95 354.4 421 51.3
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 2.3e-95 353.2 353 59.5
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 3.0e-95 352.8 352 59.1
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 3.9e-95 352.4 352 58.5
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 3.9e-95 352.4 351 58.1
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 5.1e-95 352.1 355 59.4
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 1.5e-94 350.5 355 59.4
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.5e-94 350.5 354 58.5
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.5e-94 350.5 354 58.5
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 1.5e-94 350.5 352 59.4
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.9e-94 350.1 353 58.9
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 1.9e-94 350.1 356 58.4
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 2.5e-94 349.7 355 58.0
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 2.5e-94 349.7 352 58.5
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 3.3e-94 349.4 355 58.0
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 7.3e-94 348.2 351 59.0
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 7.3e-94 348.2 355 59.2
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 7.3e-94 348.2 345 58.3
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.6e-93 347.1 370 57.0
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 6.2e-93 345.1 353 58.4
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 6.2e-93 345.1 351 58.7
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 1.1e-92 344.4 353 58.4
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 1.1e-92 344.4 353 58.6
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 3.1e-92 342.8 352 58.8
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 3.1e-92 342.8 352 58.8
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 5.3e-92 342.0 352 58.0
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 3.4e-91 339.3 353 58.9
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 3.4e-91 339.3 353 58.9
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 4.9e-90 335.5 352 58.0
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 4.9e-90 335.5 357 57.4
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 8.4e-90 334.7 407 52.8
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 1.9e-89 333.6 354 56.5
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 6.0e-88 328.6 352 56.8
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 7.9e-88 328.2 352 58.0
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 1.0e-87 327.8 375 54.4
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 1.5e-86 323.9 350 57.4
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 3.3e-86 322.8 367 55.6
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 5.6e-86 322.0 342 56.1
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 1.6e-85 320.5 304 60.5
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 4.0e-84 315.8 358 52.0
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 2.6e-83 313.2 343 54.2
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 5.8e-83 312.0 349 55.3
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 5.8e-83 312.0 342 54.1
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 5.5e-81 305.4 358 53.9
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 6.7e-79 298.5 381 50.1
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 1.9e-70 270.4 354 48.0
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 3.3e-70 269.6 261 59.8
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.3e-66 257.7 359 49.3
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 1.4e-63 247.7 357 48.2
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 3.3e-62 243.0 346 47.1
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 1.4e-60 237.7 232 58.6
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 6.5e-58 228.8 203 62.6
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 2.8e-53 213.4 318 45.6
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 1.8e-52 210.7 196 64.3
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 1.1e-49 201.4 235 54.0
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 3.0e-47 193.4 231 51.9
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 5.2e-47 192.6 142 70.4
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 6.5e-42 175.6 305 41.0
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 1.5e-41 174.5 375 37.3
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 1.9e-41 174.1 201 53.2
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.2e-40 171.4 133 69.2
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 2.7e-40 170.2 183 55.7
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 3.1e-36 156.8 235 44.7
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 7.7e-35 152.1 239 44.4
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 6.5e-34 149.1 314 37.3
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 2.5e-33 147.1 113 67.3
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 2.2e-29 134.0 231 42.4
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 6.3e-29 132.5 373 34.6
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 1.0e-26 125.2 96 66.7
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 4.2e-25 119.8 237 41.8
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 2.9e-21 107.1 309 33.0
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 8.3e-21 105.5 92 58.7
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 5.9e-19 99.4 71 71.8
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 8.0e-16 89.0 102 53.9
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 2.3e-15 87.4 95 48.4
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 3.4e-14 83.6 179 39.1
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 1.7e-13 81.3 77 59.7
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 3.7e-13 80.1 243 32.9
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 7.0e-12 75.9 86 50.0
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 1.1e-09 68.6 123 39.8
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 1.8e-07 61.2 124 41.1
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 4.0e-07 60.1 133 36.8
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 5.2e-07 59.7 46 67.4


User provided reference genes

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