Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01382 Eucalyptus grandis HOM05D003119 ORTHO05D003559 7.4e-82 307.0 139 100.0
Eucgr.B00338 Eucalyptus grandis HOM05D003119 ORTHO05D003559 2.1e-23 112.8 74 70.3
Actinidia04960 Actinidia chinensis HOM05D003119 ORTHO05D003559 1.0e-22 110.5 74 64.9
Thecc.03G004100 Theobroma cacao HOM05D003119 ORTHO05D003559 5.6e-21 104.8 74 64.9
TWI15G0194 Tripterygium wilfordii HOM05D003119 ORTHO05D003559 5.6e-21 104.8 74 62.2
Potri.012G075932 Populus trichocarpa HOM05D003119 ORTHO05D003559 7.3e-21 104.4 74 63.5
QL10p012342 Quercus lobata HOM05D003119 ORTHO05D003559 9.6e-21 104.0 74 62.2
vmacro19356 Vaccinium macrocarpon HOM05D003119 ORTHO05D003559 1.6e-20 103.2 74 62.2
Gohir.D07G074200 Gossypium hirsutum HOM05D003119 ORTHO05D003559 4.7e-20 101.7 74 63.5
Gorai.001G078400 Gossypium raimondii HOM05D003119 ORTHO05D003559 4.7e-20 101.7 74 63.5
COL.COLO4_21430 Corchorus olitorius HOM05D003119 ORTHO05D003559 6.2e-20 101.3 74 62.2
FvH4_5g16380 Fragaria vesca HOM05D003119 ORTHO05D003559 6.2e-20 101.3 78 57.7
FAN13G2511 Fragaria x ananassa HOM05D003119 ORTHO05D003559 6.2e-20 101.3 78 57.7
FAN18G1370 Fragaria x ananassa HOM05D003119 ORTHO05D003559 6.2e-20 101.3 78 57.7
Dinv20699 Davidia involucrata HOM05D003119 ORTHO05D003559 8.1e-20 100.9 73 61.6
Duzib205G0437 Durio zibethinus HOM05D003119 ORTHO05D003559 1.8e-19 99.8 78 60.3
Prupe.5G179300 Prunus persica HOM05D003119 ORTHO05D003559 1.8e-19 99.8 74 60.8
TPR.G31478 Trifolium pratense HOM05D003119 ORTHO05D003559 1.8e-19 99.8 74 59.5
GSVIVG01007826001 Vitis vinifera HOM05D003119 ORTHO05D003559 4.0e-19 98.6 74 58.1
MD14G1187100 Malus domestica HOM05D003119 ORTHO05D003559 5.2e-19 98.2 74 60.8
PGR083G0248 Punica granatum HOM05D003119 ORTHO05D003559 5.2e-19 98.2 74 56.8
Sabra12G0054100 Salix brachista HOM05D003119 ORTHO05D003559 6.8e-19 97.8 70 62.9
Cpa.g.sc35.44 Carica papaya HOM05D003119 ORTHO05D003559 8.9e-19 97.4 70 62.9
Ciclev10018883m.g Citrus clementina HOM05D003119 ORTHO05D003559 8.9e-19 97.4 74 62.2
CSS0008603 Camellia sinensis var. sinensis HOM05D003119 ORTHO05D003559 1.5e-18 96.7 74 54.1
CSS0027617 Camellia sinensis var. sinensis HOM05D003119 ORTHO05D003559 1.5e-18 96.7 74 54.1
Lj1g0014859 Lotus japonicus HOM05D003119 ORTHO05D003559 1.5e-18 96.7 74 60.8
Manes.10G139100 Manihot esculenta HOM05D003119 ORTHO05D003559 1.5e-18 96.7 74 56.8
Manes.14G070200 Manihot esculenta HOM05D003119 ORTHO05D003559 1.5e-18 96.7 74 60.8
RcHm_v2.0_Chr7g0179731 Rosa chinensis HOM05D003119 ORTHO05D003559 1.5e-18 96.7 78 56.4
Hma1.2p1_1042F.1_g251140 Hydrangea macrophylla HOM05D003119 ORTHO05D003559 2.0e-18 96.3 74 56.8
Psat0s489g0080 Pisum sativum HOM05D003119 ORTHO05D003559 2.0e-18 96.3 74 59.5
SEGI_13141 Sequoiadendron giganteum HOM05D003119 ORTHO05D003559 2.0e-18 96.3 74 56.8
DCAR_026104 Daucus carota HOM05D003119 ORTHO05D003559 2.6e-18 95.9 74 54.1
Peaxi162Scf00017g02524 Petunia axillaris HOM05D003119 ORTHO05D003559 2.6e-18 95.9 74 58.1
Rhsim08G0167900 Rhododendron simsii HOM05D003119 ORTHO05D003559 2.6e-18 95.9 70 58.6
Duzib133G0610 Durio zibethinus HOM05D003119 ORTHO05D003559 3.4e-18 95.5 74 54.1
MBI14_g41235_MAGBIO Magnolia biondii HOM05D003119 ORTHO05D003559 3.4e-18 95.5 78 56.4
Nitab4.5_0003386g0030 Nicotiana tabacum HOM05D003119 ORTHO05D003559 3.4e-18 95.5 74 56.8
Gohir.A08G142900 Gossypium hirsutum HOM05D003119 ORTHO05D003559 4.4e-18 95.1 74 52.7
HanXRQChr09g0271861 Helianthus annuus HOM05D003119 ORTHO05D003559 4.4e-18 95.1 74 56.8
HanXRQChr09g0271871 Helianthus annuus HOM05D003119 ORTHO05D003559 4.4e-18 95.1 74 56.8
Potri.009G058100 Populus trichocarpa HOM05D003119 ORTHO05D003559 4.4e-18 95.1 74 55.4
TAR633G1226 Trochodendron aralioides HOM05D003119 ORTHO05D003559 4.4e-18 95.1 74 56.8
CSS0022012 Camellia sinensis var. sinensis HOM05D003119 ORTHO05D003559 5.8e-18 94.7 74 60.8
Gorai.004G170700 Gossypium raimondii HOM05D003119 ORTHO05D003559 5.8e-18 94.7 74 52.7
Sabra09G0042700 Salix brachista HOM05D003119 ORTHO05D003559 5.8e-18 94.7 74 54.1
Thecc.01G407300 Theobroma cacao HOM05D003119 ORTHO05D003559 5.8e-18 94.7 74 54.1
arahy.Tifrunner.gnm1.ann1.7YSS56 Arachis hypogaea HOM05D003119 ORTHO05D003559 7.6e-18 94.4 74 56.8
CAN.G853.14 Capsicum annuum HOM05D003119 ORTHO05D003559 7.6e-18 94.4 74 56.8
Psat5g211360 Pisum sativum HOM05D003119 ORTHO05D003559 7.6e-18 94.4 74 56.8
VMungo1309G0904 Vigna mungo HOM05D003119 ORTHO05D003559 7.6e-18 94.4 74 58.1
Cc04_g12970 Coffea canephora HOM05D003119 ORTHO05D003559 9.9e-18 94.0 77 57.1
MBI17_g12872_MAGBIO Magnolia biondii HOM05D003119 ORTHO05D003559 9.9e-18 94.0 74 56.8
TPR.G228 Trifolium pratense HOM05D003119 ORTHO05D003559 9.9e-18 94.0 74 55.4
TWI60G0203 Tripterygium wilfordii HOM05D003119 ORTHO05D003559 9.9e-18 94.0 74 54.1
vmacro13692 Vaccinium macrocarpon HOM05D003119 ORTHO05D003559 9.9e-18 94.0 82 50.0
Lj9C454T4 Lonicera japonica HOM05D003119 ORTHO05D003559 1.3e-17 93.6 74 59.5
QL04p009441 Quercus lobata HOM05D003119 ORTHO05D003559 1.3e-17 93.6 74 54.1
Cpa.g.sc125.32 Carica papaya HOM05D003119 ORTHO05D003559 1.7e-17 93.2 74 52.7
AUR62009404 Chenopodium quinoa HOM05D003119 ORTHO05D003559 1.7e-17 93.2 74 55.4
Medtr3g032980 Medicago truncatula HOM05D003119 ORTHO05D003559 1.7e-17 93.2 74 54.1
CAN.G219.63 Capsicum annuum HOM05D003119 ORTHO05D003559 2.2e-17 92.8 74 54.1
Ca_14529_v3 Cicer arietinum L. HOM05D003119 ORTHO05D003559 2.2e-17 92.8 74 54.1
ECA232G0870 Erigeron canadensis HOM05D003119 ORTHO05D003559 2.2e-17 92.8 74 55.4
PSO063G0387 Papaver somniferum HOM05D003119 ORTHO05D003559 2.2e-17 92.8 73 56.2
arahy.Tifrunner.gnm1.ann1.MYUF54 Arachis hypogaea HOM05D003119 ORTHO05D003559 2.9e-17 92.4 74 54.1
CANSAT80G1880 Cannabis sativa HOM05D003119 ORTHO05D003559 2.9e-17 92.4 74 54.1
AUR62023087 Chenopodium quinoa HOM05D003119 ORTHO05D003559 2.9e-17 92.4 74 56.8
Ciclev10030724m.g Citrus clementina HOM05D003119 ORTHO05D003559 2.9e-17 92.4 74 52.7
COL.COLO4_04878 Corchorus olitorius HOM05D003119 ORTHO05D003559 2.9e-17 92.4 74 52.7
MELO3C017123.2 Cucumis melo HOM05D003119 ORTHO05D003559 2.9e-17 92.4 76 56.6
Dinv43414 Davidia involucrata HOM05D003119 ORTHO05D003559 2.9e-17 92.4 73 54.8
GSVIVG01032165001 Vitis vinifera HOM05D003119 ORTHO05D003559 2.9e-17 92.4 74 52.7
Glyma.06G186000 Glycine max HOM05D003119 ORTHO05D003559 3.8e-17 92.0 75 58.7
Nitab4.5_0008441g0010 Nicotiana tabacum HOM05D003119 ORTHO05D003559 3.8e-17 92.0 74 54.1
Rhsim07G0058300 Rhododendron simsii HOM05D003119 ORTHO05D003559 3.8e-17 92.0 74 54.1
CiPaw.13G007600 Carya illinoinensis HOM05D003119 ORTHO05D003559 4.9e-17 91.7 74 51.4
Haze_03156 Corylus avellana HOM05D003119 ORTHO05D003559 4.9e-17 91.7 74 54.1
FvH4_7g01470 Fragaria vesca HOM05D003119 ORTHO05D003559 4.9e-17 91.7 74 54.1
FAN01G1325 Fragaria x ananassa HOM05D003119 ORTHO05D003559 4.9e-17 91.7 74 54.1
FAN06G3340 Fragaria x ananassa HOM05D003119 ORTHO05D003559 4.9e-17 91.7 74 54.1
Lsat_1_v5_gn_4_73520 Lactuca sativa HOM05D003119 ORTHO05D003559 4.9e-17 91.7 74 54.1
Medtr3g078410 Medicago truncatula HOM05D003119 ORTHO05D003559 4.9e-17 91.7 87 48.3
PGR031G0137 Punica granatum HOM05D003119 ORTHO05D003559 4.9e-17 91.7 74 54.1
TPR.G28382 Trifolium pratense HOM05D000009 ORTHO05D003559 4.9e-17 91.7 74 54.1
Solyc01g087610.3 Solanum lycopersicum HOM05D003119 ORTHO05D003559 6.4e-17 91.3 74 52.7
Sopen01g034580 Solanum pennellii HOM05D003119 ORTHO05D003559 6.4e-17 91.3 74 52.7
Sopen03g032890 Solanum pennellii HOM05D003119 ORTHO05D003559 6.4e-17 91.3 74 54.1
RcHm_v2.0_Chr1g0317311 Rosa chinensis HOM05D003119 ORTHO05D003559 8.4e-17 90.9 74 52.7
Cfa010802 Carpinus fangiana HOM05D003119 ORTHO05D003559 1.1e-16 90.5 74 52.7
Lsat_1_v5_gn_4_32101 Lactuca sativa HOM05D003119 ORTHO05D003559 1.1e-16 90.5 77 50.6
Nn7g36274 Nelumbo nucifera HOM05D003119 ORTHO05D003559 1.1e-16 90.5 74 54.1
Aqoxy4G00031 Aquilegia oxysepala HOM05D003119 ORTHO05D003559 1.4e-16 90.1 73 53.4
ECA234G0904 Erigeron canadensis HOM05D003119 ORTHO05D003559 1.4e-16 90.1 74 51.4
SalBow5G4976 Salvia bowleyana HOM05D003119 ORTHO05D003559 1.4e-16 90.1 75 50.7
Solyc03g150154.1 Solanum lycopersicum HOM05D003119 ORTHO05D003559 1.4e-16 90.1 74 54.1
Atru.chr9.2402 Acer truncatum HOM05D003119 ORTHO05D003559 1.9e-16 89.7 74 51.4
PSO832G2904 Papaver somniferum HOM05D003119 ORTHO05D003559 1.9e-16 89.7 74 56.8
SalBow3G3123 Salvia bowleyana HOM05D003119 ORTHO05D003559 1.9e-16 89.7 74 51.4
Atru.chr11.2581 Acer truncatum HOM05D003119 ORTHO05D003559 2.4e-16 89.4 74 51.4
ATR0712G088 Amborella trichopoda HOM05D003119 ORTHO05D003559 2.4e-16 89.4 70 62.9
arahy.Tifrunner.gnm1.ann1.SMYW0Q Arachis hypogaea HOM05D003119 ORTHO05D003559 2.4e-16 89.4 74 51.4
Lj3g0004567 Lotus japonicus HOM05D003119 ORTHO05D003559 2.4e-16 89.4 74 50.0
MD07G1018700 Malus domestica HOM05D003119 ORTHO05D003559 2.4e-16 89.4 74 51.4
Nitab4.5_0000707g0180 Nicotiana tabacum HOM05D003119 ORTHO05D003559 2.4e-16 89.4 75 54.7
Oeu018528.1 Olea europaea HOM05D003119 ORTHO05D003559 2.4e-16 89.4 72 56.9
HPP92_012082 Vanilla planifolia HOM05D003119 ORTHO05D003559 2.4e-16 89.4 74 54.1
Aqoxy3G03116 Aquilegia oxysepala HOM05D003119 ORTHO05D003559 3.2e-16 89.0 77 53.2
Nitab4.5_0008927g0020 Nicotiana tabacum HOM05D003119 ORTHO05D003559 3.2e-16 89.0 70 58.6
Zm00001eb068240 Zea mays HOM05D003119 ORTHO05D003559 3.2e-16 89.0 74 55.4
CARHR199750 Cardamine hirsuta HOM05D003119 ORTHO05D003559 4.2e-16 88.6 74 48.6
CsaV3_1G001810 Cucumis sativus L. HOM05D003119 ORTHO05D003559 4.2e-16 88.6 74 56.8
Sed0021395 Sechium edule HOM05D003119 ORTHO05D003559 4.2e-16 88.6 74 54.1
EL10Ac2g04355 Beta vulgaris HOM05D003119 ORTHO05D003559 5.4e-16 88.2 74 52.7
Phvul.005G023300 Phaseolus vulgaris HOM05D003119 ORTHO05D003559 5.4e-16 88.2 74 50.0
Sc10g0000230 Simmondsia chinensis HOM05D003119 ORTHO05D003559 5.4e-16 88.2 73 53.4
CDE07G0712 Ceratophyllum demersum HOM05D003119 ORTHO05D003559 7.1e-16 87.8 75 53.3
FAN10G2435 Fragaria x ananassa HOM05D003119 ORTHO05D003559 7.1e-16 87.8 71 54.9
Glyma.10G091000 Glycine max HOM05D003119 ORTHO05D003559 7.1e-16 87.8 74 50.0
CiPaw.14G002300 Carya illinoinensis HOM05D003119 ORTHO05D003559 9.3e-16 87.4 73 52.1
Lj7C574T11 Lonicera japonica HOM05D003119 ORTHO05D003559 9.3e-16 87.4 70 57.1
AUR62029809 Chenopodium quinoa HOM05D003119 ORTHO05D003559 1.2e-15 87.0 74 52.7
Migut.B01276 Erythranthe guttata HOM05D003119 ORTHO05D003559 1.2e-15 87.0 73 52.1
FAN01G3156 Fragaria x ananassa HOM05D003119 ORTHO05D003559 1.2e-15 87.0 70 55.7
TAR629G2536 Trochodendron aralioides HOM05D003119 ORTHO05D003559 1.2e-15 87.0 73 53.4
arahy.Tifrunner.gnm1.ann1.X582RR Arachis hypogaea HOM05D003119 ORTHO05D003559 1.6e-15 86.7 73 50.7
ClCG09G003910 Citrullus lanatus HOM05D003119 ORTHO05D003559 1.6e-15 86.7 73 53.4
Cc02_g29010 Coffea canephora HOM05D003119 ORTHO05D003559 1.6e-15 86.7 74 50.0
Ca_16209_v3 Cicer arietinum L. HOM05D003119 ORTHO05D003559 2.1e-15 86.3 70 58.6
ClCG06G016700 Citrullus lanatus HOM05D003119 ORTHO05D003559 2.1e-15 86.3 74 52.7
MELO3C023569.2 Cucumis melo HOM05D003119 ORTHO05D003559 2.1e-15 86.3 73 52.1
CsaV3_7G030810 Cucumis sativus L. HOM05D003119 ORTHO05D003559 2.1e-15 86.3 73 52.1
DCAR_003225 Daucus carota HOM05D003119 ORTHO05D003559 2.1e-15 86.3 72 54.2
Sed0001972 Sechium edule HOM05D003119 ORTHO05D003559 2.1e-15 86.3 73 53.4
ATR0626G097 Amborella trichopoda HOM05D003119 ORTHO05D003559 2.7e-15 85.9 74 52.7
AL6G24300 Arabidopsis lyrata HOM05D003119 ORTHO05D003559 3.5e-15 85.5 74 47.3
MSTRG.20565 Avicennia marina HOM05D003119 ORTHO05D003559 3.5e-15 85.5 73 50.7
C02p06360 Brassica napus HOM05D003119 ORTHO05D003559 3.5e-15 85.5 74 45.9
BolC2t06579H Brassica oleracea HOM05D003119 ORTHO05D003559 3.5e-15 85.5 74 45.9
THA.LOC104809848 Tarenaya hassleriana HOM05D003119 ORTHO05D003559 3.5e-15 85.5 74 48.6
Carub.0006s1185 Capsella rubella HOM05D003119 ORTHO05D003559 4.6e-15 85.1 74 45.9
Lalb_Chr04g0263891 Lupinus albus HOM05D003119 ORTHO05D003559 4.6e-15 85.1 74 52.7
Mapoly0144s0027 Marchantia polymorpha HOM05D003119 ORTHO05D003559 4.6e-15 85.1 74 54.1
AT5G13690 Arabidopsis thaliana HOM05D003119 ORTHO05D003559 6.0e-15 84.7 74 45.9
HanXRQChr16g0524981 Helianthus annuus HOM05D003119 ORTHO05D003559 6.0e-15 84.7 74 47.3
Sp6g30330 Schrenkiella parvula HOM05D003119 ORTHO05D003559 6.0e-15 84.7 74 45.9
Thhalv10012727m.g Eutrema salsugineum HOM05D003119 ORTHO05D003559 7.8e-15 84.3 74 45.9
unitig_61.g26361 Utricularia gibba HOM05D003119 ORTHO05D003559 7.8e-15 84.3 73 46.6
QL04p009329 Quercus lobata HOM05D003119 ORTHO05D003559 1.0e-14 84.0 70 55.7
SGA_v2.0_scaffold119G32756 Striga asiatica HOM05D003119 ORTHO05D003559 1.0e-14 84.0 73 49.3
VMungo1080G0526 Vigna mungo HOM05D003119 ORTHO05D003559 1.0e-14 84.0 73 49.3
Zm00001eb394460 Zea mays HOM05D003119 ORTHO05D003559 1.0e-14 84.0 73 52.1
BcaNung04192 Brassica carinata HOM05D003119 ORTHO05D003559 3.0e-14 82.4 74 44.6
Aa31sc576G10 Aethionema arabicum HOM05D003119 ORTHO05D003559 3.9e-14 82.0 74 47.3
AagrBONN_evm.TU.Sc2ySwM_362.673 Anthoceros agrestis HOM05D003119 ORTHO05D003559 1.1e-13 80.5 73 49.3
BraA02t05183Z Brassica rapa HOM05D003119 ORTHO05D003559 1.1e-13 80.5 75 45.3
Pp3c17_12040 Physcomitrium patens HOM05D003119 ORTHO05D003559 1.5e-13 80.1 74 47.3
A02p02110 Brassica napus HOM05D003119 ORTHO05D003559 9.6e-13 77.4 74 44.6
Psat1g147240 Pisum sativum HOM05D003119 ORTHO05D003559 1.6e-12 76.6 58 56.9
SMO141G0099 Selaginella moellendorffii HOM05D003119 ORTHO05D003559 4.0e-11 72.0 73 46.6
Haze_07437 Corylus avellana HOM05D003119 ORTHO05D003559 1.2e-10 70.5 65 53.8
FAN08G2581 Fragaria x ananassa HOM05D003119 ORTHO05D003559 1.7e-06 56.6 47 57.4


User provided reference genes

Program Settings