Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 4415.9 2197 100.0
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2771.5 2224 64.2
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2757.2 2226 63.8
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2730.3 2233 63.7
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2711.4 2229 63.6
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2710.6 2229 63.1
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2705.6 2232 63.4
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2683.7 2232 62.1
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2668.6 2230 62.6
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2660.6 2229 62.2
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2647.8 2235 61.8
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2647.1 2235 62.3
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2644.0 2232 61.3
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2634.8 2237 62.0
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2633.6 2232 62.2
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2623.6 2236 61.0
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2620.1 2237 61.7
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2604.7 2222 61.4
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2594.7 2223 62.3
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2591.6 2232 60.6
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2584.7 2251 60.0
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2582.4 2235 60.1
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2572.7 2229 61.1
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2572.0 2235 59.9
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2565.8 2222 61.1
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2564.6 2235 60.9
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2561.2 2225 60.5
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2555.4 2219 60.2
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2549.2 2223 60.4
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2546.2 2230 59.9
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2522.7 2238 59.1
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2520.7 2240 59.1
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2506.5 2206 60.0
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2491.1 2236 58.8
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2468.0 2235 58.1
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2465.6 2238 58.8
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2454.1 2229 58.6
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2447.9 2241 58.9
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2447.2 2238 58.1
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2437.1 2234 57.4
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2436.8 2241 57.8
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2435.6 2233 58.2
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2431.8 2229 57.6
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2431.8 2266 57.9
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2431.0 2228 57.9
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2428.3 2249 57.6
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2417.1 2225 57.5
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2413.3 2234 58.0
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2409.4 2233 57.2
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2408.6 2237 57.8
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2407.9 2221 57.3
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2403.6 2229 57.1
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2403.6 2235 57.4
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2402.5 2252 57.1
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2400.9 2219 57.2
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2397.1 2229 56.9
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2388.2 2237 56.9
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2383.6 2235 56.5
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2379.4 2235 56.0
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2378.6 2250 57.0
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2375.1 2241 57.1
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2367.8 2262 56.9
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2365.9 2238 57.4
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2362.8 2235 57.2
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2362.8 2235 57.2
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2361.3 2235 57.0
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2353.2 2239 57.0
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2353.2 2239 57.0
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2350.1 2238 56.0
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2337.4 2229 56.8
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2333.1 2228 56.6
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2331.2 2236 56.9
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2326.6 2241 56.5
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2315.8 2235 56.5
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2312.3 2221 56.0
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2304.2 2242 56.2
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2234.5 2246 54.7
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2226.8 2237 55.0
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2224.5 1826 62.7
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2198.7 1899 60.9
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2197.9 1837 62.6
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2180.6 2065 57.2
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2160.2 2323 51.5
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2143.2 1831 61.3
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2129.8 2318 50.8
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2065.0 1713 62.9
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 2019.6 2241 50.9
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2003.4 2259 50.6
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1907.9 2225 48.8
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1827.0 1416 67.1
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1714.1 2381 42.7
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1542.3 1709 51.0
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1462.6 2348 39.6
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1427.2 2372 38.5
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1422.1 1389 55.9
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1326.6 2257 37.4
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1291.6 2207 38.6
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1278.1 1009 65.1
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1273.8 1126 60.8
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1209.9 1203 54.8
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1195.6 935 66.5
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 5.1e-310 1068.9 1067 54.3
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 1.8e-299 1033.9 1424 44.0
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 3.0e-278 963.4 780 64.5
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 6.8e-262 909.1 1016 51.2
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 1.4e-259 901.4 2457 29.8
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 8.1e-231 805.8 875 50.4
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 6.0e-218 763.1 718 57.1
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 9.0e-206 722.6 1378 36.9
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 2.8e-175 621.3 1018 40.5
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 1.2e-152 546.2 2455 25.7
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 3.3e-123 448.4 435 50.6
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 2.9e-111 408.7 370 58.6
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 6.0e-85 321.2 317 53.9
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.3e-76 293.5 305 50.5
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 5.6e-75 288.1 290 57.2
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 2.5e-67 262.7 233 57.9
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 3.3e-67 262.3 317 47.3
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 6.5e-63 248.1 764 28.8
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 9.7e-59 234.2 234 53.8
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 1.8e-52 213.4 273 44.3
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 1.3e-50 207.2 173 64.7
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 2.2e-42 179.9 223 46.2
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 4.5e-40 172.2 143 64.3
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 6.5e-39 168.3 476 29.4
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 3.5e-32 146.0 91 79.1
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 2.2e-31 143.3 137 54.7
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 8.0e-29 134.8 113 62.8
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 1.0e-28 134.4 236 36.9
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 1.2e-24 120.9 110 57.3
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 2.7e-24 119.8 102 57.8
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 9.2e-17 94.7 121 41.3


User provided reference genes

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