Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01288 Eucalyptus grandis HOM05D001393 ORTHO05D007477 7.3e-113 410.6 214 100.0
Eucgr.J01280 Eucalyptus grandis HOM05D001393 ORTHO05D007477 1.8e-79 299.7 177 87.0
PGR044G2234 Punica granatum HOM05D001393 ORTHO05D007477 3.1e-26 122.9 124 45.2
Thecc.01G409700 Theobroma cacao HOM05D001393 ORTHO05D007477 6.8e-26 121.7 148 45.9
Gorai.004G171900 Gossypium raimondii HOM05D001393 ORTHO05D007477 4.4e-25 119.0 150 44.0
Gohir.D08G164900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 7.5e-25 118.2 149 43.6
Dinv43433 Davidia involucrata HOM05D001393 ORTHO05D007477 9.8e-25 117.9 141 46.8
COL.COLO4_04862 Corchorus olitorius HOM05D001393 ORTHO05D007477 2.4e-23 113.2 172 41.3
CANSAT80G1121 Cannabis sativa HOM05D001393 ORTHO05D007477 4.1e-23 112.5 151 40.4
Sc11g0009120 Simmondsia chinensis HOM05D001393 ORTHO05D007477 5.4e-23 112.1 157 43.3
Dinv09348 Davidia involucrata HOM05D001393 ORTHO05D007477 1.6e-22 110.5 173 39.9
Duzib133G0545 Durio zibethinus HOM05D001393 ORTHO05D007477 1.6e-22 110.5 150 42.7
GSVIVG01032121001 Vitis vinifera HOM05D001393 ORTHO05D007477 2.1e-22 110.2 170 44.1
CiPaw.14G000700 Carya illinoinensis HOM05D001393 ORTHO05D007477 2.7e-22 109.8 158 46.2
Ciclev10030722m.g Citrus clementina HOM05D001393 ORTHO05D007477 2.7e-22 109.8 170 37.6
FAN03G1765 Fragaria x ananassa HOM05D001393 ORTHO05D007477 2.7e-22 109.8 120 48.3
FAN03G3510 Fragaria x ananassa HOM05D001393 ORTHO05D007477 2.7e-22 109.8 120 48.3
Gohir.A08G143900 Gossypium hirsutum HOM05D001393 ORTHO05D007477 6.0e-22 108.6 163 41.1
CsaV3_7G030970 Cucumis sativus L. HOM05D001393 ORTHO05D007477 7.8e-22 108.2 136 47.8
FvH4_7g01170 Fragaria vesca HOM05D001393 ORTHO05D007477 7.8e-22 108.2 149 40.9
FAN06G3336 Fragaria x ananassa HOM05D001393 ORTHO05D007477 7.8e-22 108.2 149 40.9
Cpa.g.sc125.11 Carica papaya HOM05D001393 ORTHO05D007477 1.3e-21 107.5 171 40.4
Cfa010777 Carpinus fangiana HOM05D001393 ORTHO05D007477 3.0e-21 106.3 120 48.3
MELO3C023559.2 Cucumis melo HOM05D001393 ORTHO05D007477 6.6e-21 105.1 134 46.3
Atru.chr11.2612 Acer truncatum HOM05D001393 ORTHO05D007477 1.1e-20 104.4 172 36.6
MD02G1309200 Malus domestica HOM05D001393 ORTHO05D007477 1.1e-20 104.4 173 37.6
Manes.10G141000 Manihot esculenta HOM05D001393 ORTHO05D007477 1.1e-20 104.4 168 38.7
QL04p008271 Quercus lobata HOM05D001393 ORTHO05D007477 1.5e-20 104.0 153 41.8
CSS0038724 Camellia sinensis var. sinensis HOM05D001393 ORTHO05D007477 1.9e-20 103.6 183 39.9
Prupe.2G015000 Prunus persica HOM05D001393 ORTHO05D007477 2.5e-20 103.2 145 41.4
FAN01G2686 Fragaria x ananassa HOM05D001393 ORTHO05D007477 3.3e-20 102.8 120 45.8
ClCG09G004070 Citrullus lanatus HOM05D001393 ORTHO05D007477 4.3e-20 102.4 156 43.6
Os07g0569000 Oryza sativa ssp. japonica HOM05D001393 ORTHO05D007477 7.3e-20 101.7 146 41.8
MBI04_g36081_MAGBIO Magnolia biondii HOM05D001393 ORTHO05D007477 9.5e-20 101.3 162 40.1
Sed0015725 Sechium edule HOM05D001393 ORTHO05D007477 9.5e-20 101.3 157 38.9
TWI73G0713 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 9.5e-20 101.3 141 39.7
Phvul.011G009600 Phaseolus vulgaris HOM05D001393 ORTHO05D007477 2.1e-19 100.1 114 47.4
vmacro13675 Vaccinium macrocarpon HOM05D001393 ORTHO05D007477 2.1e-19 100.1 127 44.9
Oeu049495.1 Olea europaea HOM05D001393 ORTHO05D007477 2.8e-19 99.8 121 48.8
TAR623G0231 Trochodendron aralioides HOM05D001393 ORTHO05D007477 3.6e-19 99.4 161 39.8
PSO339G5226 Papaver somniferum HOM05D001393 ORTHO05D007477 6.2e-19 98.6 172 37.8
ECA248G1228 Erigeron canadensis HOM05D001393 ORTHO05D007477 8.1e-19 98.2 143 43.4
Nn2g15307 Nelumbo nucifera HOM05D001393 ORTHO05D007477 8.1e-19 98.2 153 41.2
Hund21482 Selenicereus undatus HOM05D001393 ORTHO05D007477 1.4e-18 97.4 133 45.9
VMungo1127G2137 Vigna mungo HOM05D001393 ORTHO05D007477 1.4e-18 97.4 113 46.9
Actinidia21547 Actinidia chinensis HOM05D001393 ORTHO05D007477 1.8e-18 97.1 158 41.8
HanXRQChr09g0251311 Helianthus annuus HOM05D001393 ORTHO05D007477 1.8e-18 97.1 135 43.7
RcHm_v2.0_Chr1g0316471 Rosa chinensis HOM05D001393 ORTHO05D007477 1.8e-18 97.1 160 34.4
Potri.001G265100 Populus trichocarpa HOM05D001393 ORTHO05D007477 2.3e-18 96.7 163 39.9
TWI09G0484 Tripterygium wilfordii HOM05D001393 ORTHO05D007477 3.1e-18 96.3 142 38.7
Glyma.12G007700 Glycine max HOM05D001393 ORTHO05D007477 6.8e-18 95.1 144 44.4
PSO384G0142 Papaver somniferum HOM05D001393 ORTHO05D007477 6.8e-18 95.1 172 37.8
arahy.Tifrunner.gnm1.ann1.C4Q3NJ Arachis hypogaea HOM05D001393 ORTHO05D007477 8.9e-18 94.7 162 35.2
Aqoxy1G00280 Aquilegia oxysepala HOM05D001393 ORTHO05D007477 1.5e-17 94.0 142 36.6
Carub.0008s0749 Capsella rubella HOM05D001393 ORTHO05D007477 1.5e-17 94.0 166 34.9
Sabra16G0162900 Salix brachista HOM05D001393 ORTHO05D007477 1.5e-17 94.0 156 39.7
arahy.Tifrunner.gnm1.ann1.S6CP9J Arachis hypogaea HOM05D001393 ORTHO05D007477 2.0e-17 93.6 162 34.6
Aa31LG11G7400 Aethionema arabicum HOM05D001393 ORTHO05D007477 2.6e-17 93.2 134 41.8
MD07G1012500 Malus domestica HOM05D001393 ORTHO05D007477 4.4e-17 92.4 172 35.5
Lj3g0000057 Lotus japonicus HOM05D001393 ORTHO05D007477 7.6e-17 91.7 108 47.2
PGSC0003DMG401023992 Solanum tuberosum HOM05D001393 ORTHO05D007477 9.9e-17 91.3 146 37.0
AT5G47940 Arabidopsis thaliana HOM05D001393 ORTHO05D007477 1.3e-16 90.9 151 37.1
A06p39440 Brassica napus HOM05D001393 ORTHO05D007477 1.7e-16 90.5 144 34.7
BraA06t26859Z Brassica rapa HOM05D001393 ORTHO05D007477 1.7e-16 90.5 144 34.7
Solyc11g007060.2 Solanum lycopersicum HOM05D001393 ORTHO05D007477 1.7e-16 90.5 146 37.0
AUR62009391 Chenopodium quinoa HOM05D001393 ORTHO05D007477 2.9e-16 89.7 162 34.0
Medtr4g037495 Medicago truncatula HOM05D001393 ORTHO05D007477 2.9e-16 89.7 110 46.4
Nitab4.5_0000001g0230 Nicotiana tabacum HOM05D001393 ORTHO05D007477 2.9e-16 89.7 142 38.7
Peaxi162Scf00152g01336 Petunia axillaris HOM05D001393 ORTHO05D007477 2.9e-16 89.7 155 37.4
Zm00001eb324710 Zea mays HOM05D001393 ORTHO05D007477 2.9e-16 89.7 121 43.8
Sopen11g002980 Solanum pennellii HOM05D001393 ORTHO05D007477 3.8e-16 89.4 137 39.4
SGA_v2.0_scaffold5G02964 Striga asiatica HOM05D001393 ORTHO05D007477 4.9e-16 89.0 134 44.8
Cc02_g28120 Coffea canephora HOM05D001393 ORTHO05D007477 6.4e-16 88.6 112 50.0
Nitab4.5_0001761g0330 Nicotiana tabacum HOM05D001393 ORTHO05D007477 8.4e-16 88.2 162 36.4
SalBow7G4183 Salvia bowleyana HOM05D001393 ORTHO05D007477 8.4e-16 88.2 143 39.2
DCAR_029678 Daucus carota HOM05D001393 ORTHO05D007477 1.4e-15 87.4 124 41.9
AUR62023073 Chenopodium quinoa HOM05D001393 ORTHO05D007477 1.9e-15 87.0 170 34.7
Migut.N01605 Erythranthe guttata HOM05D001393 ORTHO05D007477 1.9e-15 87.0 118 40.7
Thhalv10003674m.g Eutrema salsugineum HOM05D001393 ORTHO05D007477 1.9e-15 87.0 163 34.4
SalBow6G6124 Salvia bowleyana HOM05D001393 ORTHO05D007477 1.9e-15 87.0 143 38.5
AL8G20040 Arabidopsis lyrata HOM05D001393 ORTHO05D007477 3.2e-15 86.3 136 36.0
CAN.G1513.5 Capsicum annuum HOM05D001393 ORTHO05D007477 3.2e-15 86.3 138 37.7
MSTRG.5028 Avicennia marina HOM05D001393 ORTHO05D007477 4.1e-15 85.9 120 42.5
Lj9A633T62 Lonicera japonica HOM05D001393 ORTHO05D007477 4.1e-15 85.9 110 42.7
Lsat_1_v5_gn_1_106561 Lactuca sativa HOM05D001393 ORTHO05D007477 7.1e-15 85.1 126 40.5
TPR.G3660 Trifolium pratense HOM05D001393 ORTHO05D007477 7.1e-15 85.1 110 43.6
Sp2g18440 Schrenkiella parvula HOM05D001393 ORTHO05D007477 9.2e-15 84.7 156 32.1
Zm00001eb107220 Zea mays HOM05D001393 ORTHO05D007477 9.2e-15 84.7 147 38.1
MSTRG.28063 Avicennia marina HOM05D001393 ORTHO05D007477 1.2e-14 84.3 125 40.8
EL10Ac2g04339 Beta vulgaris HOM05D001393 ORTHO05D007477 1.2e-14 84.3 138 39.1
Ca_19581_v3 Cicer arietinum L. HOM05D001393 ORTHO05D007477 1.6e-14 84.0 111 48.6
ATR0332G069 Amborella trichopoda HOM05D001393 ORTHO05D007477 4.6e-14 82.4 153 43.1
CARHR184320 Cardamine hirsuta HOM05D001393 ORTHO05D007477 4.6e-14 82.4 108 43.5
Psat7g196360 Pisum sativum HOM05D001393 ORTHO05D007477 6.0e-14 82.0 110 43.6
Potri.009G060000 Populus trichocarpa HOM05D001393 ORTHO05D007477 6.0e-14 82.0 173 33.5
Sabra09G0044200 Salix brachista HOM05D001393 ORTHO05D007477 1.0e-13 81.3 139 38.8
BcaC06g30834 Brassica carinata HOM05D001393 ORTHO05D007477 1.7e-13 80.5 148 32.4
Lalb_Chr19g0140311 Lupinus albus HOM05D001393 ORTHO05D007477 3.0e-13 79.7 138 36.2
Glyma.09G228900 Glycine max HOM05D001393 ORTHO05D007477 8.6e-13 78.2 84 50.0
C07p38830 Brassica napus HOM05D001393 ORTHO05D007477 1.9e-12 77.0 145 31.7
BolC7t44402H Brassica oleracea HOM05D001393 ORTHO05D007477 2.5e-12 76.6 145 31.7
CDE05G0268 Ceratophyllum demersum HOM05D001393 ORTHO05D007477 2.4e-10 70.1 135 37.0
Ah.10g038800 Amaranthus hybridus HOM05D001393 ORTHO05D007477 5.2e-10 68.9 93 40.9
HPP92_015712 Vanilla planifolia HOM05D001393 ORTHO05D007477 6.9e-10 68.6 118 38.1
HPP92_026649 Vanilla planifolia HOM05D001393 ORTHO05D007477 2.0e-09 67.0 118 37.3
SEGI_24281 Sequoiadendron giganteum HOM05D000890 ORTHO05D007477 1.3e-08 64.3 155 34.8
SEGI_29291 Sequoiadendron giganteum HOM05D020720 ORTHO05D007477 1.3e-08 64.3 155 34.8
Duzib138G1437 Durio zibethinus HOM05D001393 ORTHO05D007477 4.9e-08 62.4 91 40.7


User provided reference genes

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