Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 3.0e-230 801.6 438 100.0
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 3.4e-96 356.3 387 55.6
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 2.8e-95 353.2 387 54.8
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 5.4e-94 349.0 390 53.8
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 5.4e-94 349.0 390 53.8
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 1.0e-92 344.7 386 52.8
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 8.6e-92 341.7 382 53.1
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 4.7e-90 335.9 415 48.9
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 1.2e-88 331.3 386 53.9
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 2.9e-87 326.6 379 52.2
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 6.4e-87 325.5 418 48.1
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 8.3e-87 325.1 387 51.4
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 8.3e-87 325.1 385 51.4
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.4e-86 324.3 382 51.8
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 1.6e-85 320.9 418 47.8
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 1.6e-85 320.9 385 51.9
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 6.0e-85 318.9 388 51.3
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 6.0e-85 318.9 393 50.6
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.3e-84 317.8 385 51.9
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 2.3e-84 317.0 386 51.3
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 1.9e-83 313.9 384 51.0
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 3.3e-83 313.2 385 51.9
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 2.8e-82 310.1 388 49.7
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 6.2e-82 308.9 410 50.0
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 1.1e-81 308.1 403 48.1
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 1.4e-81 307.8 384 50.0
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 3.1e-81 306.6 402 49.8
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 8.9e-81 305.1 341 53.1
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 8.9e-81 305.1 387 48.1
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 8.9e-81 305.1 387 48.1
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.6e-80 303.5 383 49.3
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 5.8e-80 302.4 372 51.1
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 5.8e-80 302.4 404 46.5
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.3e-79 301.2 387 50.1
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.7e-79 300.8 426 45.1
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 4.9e-79 299.3 391 50.4
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 8.3e-79 298.5 426 46.5
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 2.4e-78 297.0 383 48.6
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 7.1e-78 295.4 383 49.9
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 1.6e-77 294.3 433 44.3
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 2.7e-77 293.5 396 48.2
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 7.8e-77 292.0 414 49.3
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 1.3e-76 291.2 419 45.3
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.7e-76 290.8 395 48.1
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.3e-76 290.4 425 43.5
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 3.9e-76 289.7 383 48.6
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 2.1e-74 283.9 397 47.4
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.8e-74 283.5 411 44.8
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.4e-73 281.2 395 46.1
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.8e-73 280.8 375 49.3
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.3e-73 280.4 386 47.7
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 4.0e-73 279.6 395 46.1
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 4.0e-73 279.6 382 47.1
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.5e-72 277.7 387 45.7
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.5e-72 277.7 415 43.9
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 5.8e-72 275.8 387 45.0
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 2.9e-71 273.5 395 46.8
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 3.7e-71 273.1 385 45.5
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 3.2e-70 270.0 401 45.6
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.2e-69 268.1 398 46.5
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.2e-69 268.1 415 43.1
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 4.6e-69 266.2 394 44.7
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 7.8e-69 265.4 386 44.8
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 7.8e-69 265.4 374 48.1
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 3.0e-68 263.5 340 49.1
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 5.1e-68 262.7 387 44.7
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 3.3e-67 260.0 393 45.8
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 3.3e-67 260.0 408 45.3
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 5.6e-67 259.2 396 44.9
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.2e-66 258.1 401 45.4
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 3.6e-66 256.5 430 42.3
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.4e-65 254.6 397 45.8
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 1.8e-65 254.2 428 42.3
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 3.1e-65 253.4 399 45.1
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.6e-64 250.4 385 43.6
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 9.9e-64 248.4 381 43.8
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 2.9e-63 246.9 397 44.3
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 6.4e-63 245.7 333 47.4
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 1.1e-62 245.0 393 42.0
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.1e-62 245.0 383 44.1
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 5.4e-62 242.7 377 42.4
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 1.6e-61 241.1 385 45.7
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 1.6e-61 241.1 383 43.6
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 5.1e-60 236.1 387 42.4
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 4.3e-59 233.0 385 43.1
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 5.6e-59 232.6 380 41.6
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 2.4e-57 227.3 394 41.4
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 5.3e-57 226.1 370 43.8
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 1.5e-56 224.6 327 46.2
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 7.6e-56 222.2 411 40.6
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.2e-55 220.7 250 54.0
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 9.3e-54 215.3 283 50.2
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 1.6e-53 214.5 415 41.0
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.1e-53 214.2 275 49.1
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 2.3e-52 210.7 418 41.9
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 3.0e-52 210.3 386 42.0
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 9.6e-51 205.3 409 39.6
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.3e-50 204.9 415 40.5
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 2.1e-50 204.1 410 39.3
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 2.1e-50 204.1 410 39.3
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 4.8e-50 203.0 392 39.0
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.1e-49 201.8 327 44.0
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 2.4e-49 200.7 411 38.4
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 4.0e-49 199.9 409 39.1
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 9.0e-49 198.7 409 39.1
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 9.0e-49 198.7 413 39.0
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 4.5e-48 196.4 410 38.8
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 5.8e-48 196.1 411 38.4
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 2.1e-45 187.6 422 35.1
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 2.5e-43 180.6 419 37.7
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 9.6e-43 178.7 299 45.8
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 3.1e-41 173.7 418 36.6
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 6.9e-41 172.6 421 36.1
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 3.4e-40 170.2 264 43.9
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 5.8e-40 169.5 329 38.9
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 1.7e-39 167.9 422 36.0
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 8.4e-39 165.6 418 36.6
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 1.1e-38 165.2 224 44.6
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 7.9e-37 159.1 416 35.8
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 1.9e-35 154.5 251 42.6
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 3.3e-35 153.7 259 40.5
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 3.7e-34 150.2 278 41.4
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 3.7e-34 150.2 232 41.8
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 4.8e-34 149.8 265 40.0
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 6.3e-34 149.4 259 40.2
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 1.1e-33 148.7 258 41.1
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 1.2e-32 145.2 230 40.4
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 2.0e-32 144.4 260 41.2
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 4.5e-32 143.3 422 32.2
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 5.8e-32 142.9 218 43.6
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 1.3e-31 141.7 258 41.1
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 1.7e-31 141.4 224 41.5
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 2.2e-31 141.0 236 46.2
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 3.8e-31 140.2 241 39.8
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 1.4e-30 138.3 270 39.3
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 1.9e-30 137.9 381 31.0
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 1.9e-30 137.9 340 34.7
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 3.2e-30 137.1 272 39.7
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 4.2e-30 136.7 206 43.2
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 5.5e-30 136.3 268 39.2
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 1.2e-29 135.2 265 39.2
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.6e-29 134.8 252 40.1
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 2.7e-29 134.0 224 43.3
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 7.9e-29 132.5 208 46.2
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 7.9e-29 132.5 252 38.1
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 1.3e-28 131.7 236 38.1
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.8e-28 131.3 270 36.7
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 3.9e-28 130.2 208 38.9
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 3.9e-28 130.2 250 36.4
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 6.7e-28 129.4 240 37.1
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 8.7e-28 129.0 260 38.1
AUR62044097 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.3e-26 125.2 196 44.4
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 3.7e-26 123.6 418 31.6
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.1e-25 122.1 143 49.7
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 1.4e-25 121.7 368 32.9
Rhsim07G0166600 Rhododendron simsii HOM05D004075 ORTHO05D004538 4.5e-24 116.7 195 41.0
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 5.9e-24 116.3 386 29.5
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 7.7e-24 115.9 216 39.8
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 2.2e-18 97.8 151 48.3
Rhsim01G0129600 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.4e-17 94.4 122 46.7
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 2.0e-16 91.3 112 42.0
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 2.7e-13 80.9 135 41.5
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 8.8e-12 75.9 175 34.9
MD16G1127600 Malus domestica HOM05D002407 ORTHO05D002476 2.2e-07 61.2 93 43.0
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 2.2e-07 61.2 187 29.4
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 2.2e-07 61.2 187 29.4
Dinv00534 Davidia involucrata HOM05D004075 ORTHO05D004538 3.2e-06 57.4 59 49.2
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 4.2e-06 57.0 222 27.9


User provided reference genes

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