Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 7.4e-74 280.4 138 100.0
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.7e-70 269.2 138 96.4
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.2e-69 265.0 138 95.7
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 2.1e-68 262.3 130 99.2
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 1.0e-59 233.4 137 78.1
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 2.0e-58 229.2 137 76.6
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 7.4e-58 227.3 137 77.4
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 1.7e-57 226.1 137 75.9
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 4.8e-57 224.6 137 74.5
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 7.0e-56 220.7 137 75.2
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 1.2e-55 219.9 137 74.5
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 1.2e-55 219.9 137 73.7
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 2.6e-55 218.8 136 71.3
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 3.5e-55 218.4 137 73.7
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 7.7e-55 217.2 137 73.7
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.3e-54 216.5 137 70.1
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 5.0e-54 214.5 137 73.0
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 6.5e-54 214.2 137 74.5
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 8.5e-54 213.8 137 68.6
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 8.5e-54 213.8 137 68.6
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.1e-53 213.4 137 67.9
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.1e-53 213.4 137 69.3
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.1e-53 213.4 137 69.3
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.5e-53 213.0 137 68.6
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 1.9e-53 212.6 137 70.8
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 1.9e-53 212.6 137 67.9
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 3.2e-53 211.8 137 70.8
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 3.2e-53 211.8 137 69.3
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 4.2e-53 211.5 137 71.5
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 5.5e-53 211.1 137 71.5
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 5.5e-53 211.1 137 71.5
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 7.2e-53 210.7 137 69.3
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 9.4e-53 210.3 137 69.3
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.2e-52 209.9 137 70.8
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.6e-52 209.5 137 71.5
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 2.1e-52 209.1 137 69.3
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 2.7e-52 208.8 137 68.6
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 3.6e-52 208.4 137 71.5
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 4.7e-52 208.0 137 70.8
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 6.1e-52 207.6 136 71.3
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 8.0e-52 207.2 137 69.3
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 1.4e-51 206.5 137 69.3
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 1.8e-51 206.1 137 67.2
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 2.3e-51 205.7 137 70.1
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 2.3e-51 205.7 137 68.6
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 3.9e-51 204.9 137 70.1
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 5.2e-51 204.5 137 65.0
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 5.2e-51 204.5 137 70.1
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 5.2e-51 204.5 137 70.1
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 5.2e-51 204.5 138 68.8
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 6.7e-51 204.1 137 66.4
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 2.0e-50 202.6 137 69.3
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 2.0e-50 202.6 137 64.2
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 2.6e-50 202.2 138 68.1
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.6e-50 202.2 137 69.3
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 2.6e-50 202.2 137 69.3
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 3.3e-50 201.8 137 67.9
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 4.4e-50 201.4 137 66.4
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 9.7e-50 200.3 137 65.0
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 1.3e-49 199.9 137 69.3
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.3e-49 199.9 137 68.6
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 1.7e-49 199.5 137 63.5
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.7e-49 199.5 137 67.9
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 2.2e-49 199.1 137 64.2
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 2.8e-49 198.7 137 67.9
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 4.8e-49 198.0 137 67.2
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 6.3e-49 197.6 128 68.8
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 8.2e-49 197.2 137 64.2
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 8.2e-49 197.2 137 67.2
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 8.2e-49 197.2 137 66.4
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 8.2e-49 197.2 137 67.9
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 1.4e-48 196.4 137 68.6
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.8e-48 196.1 137 65.7
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 1.8e-48 196.1 137 68.6
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.8e-48 196.1 137 65.0
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 2.4e-48 195.7 138 65.2
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 3.1e-48 195.3 137 65.7
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 3.1e-48 195.3 137 65.7
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 3.1e-48 195.3 137 64.2
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 4.1e-48 194.9 137 64.2
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 4.1e-48 194.9 137 65.0
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.2e-47 193.4 137 65.0
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.6e-47 193.0 137 65.7
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 2.0e-47 192.6 137 61.3
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 2.0e-47 192.6 135 65.9
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 3.5e-47 191.8 137 65.7
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 3.5e-47 191.8 137 63.5
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 4.5e-47 191.4 137 65.7
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 5.9e-47 191.0 137 65.0
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 7.7e-47 190.7 137 66.4
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 7.7e-47 190.7 137 63.5
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.3e-46 189.9 138 63.0
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.7e-46 189.5 137 65.7
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 2.2e-46 189.1 138 60.9
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 2.2e-46 189.1 138 60.9
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 2.2e-46 189.1 137 62.8
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 3.8e-46 188.3 137 63.5
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 3.8e-46 188.3 137 63.5
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 5.0e-46 188.0 137 65.7
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 6.5e-46 187.6 137 62.0
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 8.5e-46 187.2 137 65.7
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.1e-45 186.8 128 69.5
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 3.2e-45 185.3 137 63.5
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 7.2e-45 184.1 137 59.9
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 7.2e-45 184.1 138 61.6
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 9.4e-45 183.7 137 60.6
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.2e-44 183.3 137 62.0
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.6e-44 183.0 137 62.8
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 2.1e-44 182.6 138 60.1
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 2.7e-44 182.2 137 65.7
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 2.7e-44 182.2 137 61.3
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 5.2e-43 177.9 137 61.3
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 1.5e-42 176.4 137 62.8
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 2.6e-42 175.6 137 62.0
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 3.4e-42 175.3 137 59.9
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 5.7e-42 174.5 138 56.5
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 3.7e-41 171.8 137 56.2
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 1.8e-40 169.5 135 56.3
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 5.9e-39 164.5 137 56.9
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.3e-38 163.3 128 60.2
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.7e-38 162.9 137 54.0
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.7e-38 162.9 112 67.9
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 2.2e-38 162.5 137 54.7
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 5.0e-38 161.4 112 68.8
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 1.1e-37 160.2 137 55.5
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 5.5e-37 157.9 134 56.7
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 5.5e-37 157.9 137 51.8
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 9.4e-37 157.1 137 54.0
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 2.1e-36 156.0 131 56.5
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 2.7e-36 155.6 137 54.0
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 3.6e-36 155.2 137 57.7
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 5.2e-35 151.4 137 49.6
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.2e-34 150.2 137 53.3
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 2.8e-33 145.6 123 54.5
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 5.4e-32 141.4 103 64.1
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 4.5e-31 138.3 115 57.4
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 4.5e-31 138.3 138 44.9
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 7.7e-31 137.5 137 52.6
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 6.6e-30 134.4 106 58.5
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.8e-28 129.0 137 48.2
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 6.1e-28 127.9 137 47.4
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 2.9e-25 119.0 136 46.3
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 1.6e-23 113.2 137 43.8
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 3.1e-19 99.0 137 41.6
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 7.8e-15 84.3 64 62.5
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 3.2e-08 62.4 134 31.3
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.3e-06 56.2 39 61.5


User provided reference genes

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