Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01137 Eucalyptus grandis HOM05D003984 ORTHO05D004740 8.1e-146 520.4 263 100.0
QL08p057270 Quercus lobata HOM05D003984 ORTHO05D004740 4.0e-121 438.3 266 84.2
CSS0011111 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 9.0e-121 437.2 266 83.1
Dinv11820 Davidia involucrata HOM05D003984 ORTHO05D004740 1.2e-120 436.8 267 83.1
COL.COLO4_23777 Corchorus olitorius HOM05D003984 ORTHO05D004740 1.5e-120 436.4 265 82.3
CANSAT56G1305 Cannabis sativa HOM05D003984 ORTHO05D004740 2.6e-120 435.6 267 82.8
Manes.10G040500 Manihot esculenta HOM05D003984 ORTHO05D004740 7.6e-120 434.1 266 84.6
Thecc.10G065000 Theobroma cacao HOM05D003984 ORTHO05D004740 1.0e-119 433.7 265 81.9
Atru.chr12.610 Acer truncatum HOM05D003984 ORTHO05D004740 3.8e-119 431.8 265 81.9
ClCG09G020350 Citrullus lanatus HOM05D003984 ORTHO05D004740 4.9e-119 431.4 266 82.3
Manes.07G104700 Manihot esculenta HOM05D003984 ORTHO05D004740 4.9e-119 431.4 265 83.0
CiPaw.01G278000 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.4e-118 429.9 267 81.6
Peaxi162Scf01024g00120 Petunia axillaris HOM05D003984 ORTHO05D004740 4.2e-118 428.3 263 81.7
AUR62036011 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.2e-117 426.8 266 82.7
CiPaw.02G177500 Carya illinoinensis HOM05D003984 ORTHO05D004740 1.6e-117 426.4 268 82.5
CsaV3_5G026080 Cucumis sativus L. HOM05D003984 ORTHO05D004740 2.1e-117 426.0 266 80.8
Lj5g0020432 Lotus japonicus HOM05D003984 ORTHO05D004740 2.7e-117 425.6 264 83.3
RcHm_v2.0_Chr1g0364411 Rosa chinensis HOM05D003984 ORTHO05D004740 2.7e-117 425.6 267 80.9
CSS0025505 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.5e-117 425.2 267 81.3
Prupe.2G220800 Prunus persica HOM05D003984 ORTHO05D004740 4.6e-117 424.9 267 80.5
MSTRG.27450 Avicennia marina HOM05D003984 ORTHO05D004740 6.0e-117 424.5 267 82.8
GSVIVG01032647001 Vitis vinifera HOM05D003984 ORTHO05D004740 7.9e-117 424.1 267 82.0
MD01G1114200 Malus domestica HOM05D003984 ORTHO05D004740 1.8e-116 422.9 267 80.9
MD07G1182100 Malus domestica HOM05D003984 ORTHO05D004740 2.3e-116 422.5 267 80.9
CSS0036351 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 3.0e-116 422.2 267 80.9
Ciclev10032445m.g Citrus clementina HOM05D003984 ORTHO05D004740 3.9e-116 421.8 266 81.6
Dinv31376 Davidia involucrata HOM05D003984 ORTHO05D004740 3.9e-116 421.8 267 80.5
Cfa001574 Carpinus fangiana HOM05D003984 ORTHO05D004740 5.1e-116 421.4 267 80.9
PGR044G2197 Punica granatum HOM05D003984 ORTHO05D004740 5.1e-116 421.4 259 83.8
Peaxi162Scf00195g00824 Petunia axillaris HOM05D003984 ORTHO05D004740 8.7e-116 420.6 263 81.0
Nitab4.5_0000830g0100 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.1e-115 420.2 264 80.7
EL10Ac2g03538 Beta vulgaris HOM05D003984 ORTHO05D004740 1.5e-115 419.9 267 80.9
SGA_v2.0_scaffold62G21447 Striga asiatica HOM05D003984 ORTHO05D004740 1.5e-115 419.9 259 83.4
Cc09_g02350 Coffea canephora HOM05D003984 ORTHO05D004740 1.9e-115 419.5 267 81.3
Solyc04g049710.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 1.9e-115 419.5 264 81.1
Duzib114G0791 Durio zibethinus HOM05D003984 ORTHO05D004740 2.5e-115 419.1 265 81.5
Sopen04g019960 Solanum pennellii HOM05D003984 ORTHO05D004740 3.3e-115 418.7 264 81.1
Actinidia13840 Actinidia chinensis HOM05D003984 ORTHO05D004740 5.7e-115 417.9 262 82.1
TWI15G0393 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 5.7e-115 417.9 264 82.2
Lalb_Chr06g0164371 Lupinus albus HOM05D003984 ORTHO05D004740 7.4e-115 417.5 266 79.3
Potri.008G046000 Populus trichocarpa HOM05D003984 ORTHO05D004740 9.6e-115 417.2 265 80.8
Nitab4.5_0001248g0030 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.8e-114 415.6 264 80.3
Sed0003028 Sechium edule HOM05D003984 ORTHO05D004740 6.3e-114 414.5 267 79.8
Lalb_Chr21g0307521 Lupinus albus HOM05D003984 ORTHO05D004740 8.2e-114 414.1 274 78.5
Duzib128G0096 Durio zibethinus HOM05D003984 ORTHO05D004740 1.8e-113 412.9 266 80.8
Gorai.012G092700 Gossypium raimondii HOM05D003984 ORTHO05D004740 1.8e-113 412.9 265 78.9
Medtr1g116240 Medicago truncatula HOM05D003984 ORTHO05D004740 1.8e-113 412.9 268 78.7
Potri.010G215500 Populus trichocarpa HOM05D003984 ORTHO05D004740 3.1e-113 412.1 268 81.3
Hund22456 Selenicereus undatus HOM05D003984 ORTHO05D004740 3.1e-113 412.1 267 80.9
CSS0002243 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 5.3e-113 411.4 254 83.1
AUR62041612 Chenopodium quinoa HOM05D003984 ORTHO05D004740 1.2e-112 410.2 293 74.7
FAN10G1795 Fragaria x ananassa HOM05D003984 ORTHO05D004740 4.5e-112 408.3 267 79.4
Lj8A94T49 Lonicera japonica HOM05D003984 ORTHO05D004740 4.5e-112 408.3 268 79.9
Oeu055063.1 Olea europaea HOM05D003984 ORTHO05D004740 4.5e-112 408.3 267 77.9
Migut.F02015 Erythranthe guttata HOM05D003984 ORTHO05D004740 7.6e-112 407.5 259 80.7
FAN06G2832 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.0e-111 407.1 267 79.0
FAN03G0045 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.3e-111 406.8 267 78.7
Nitab4.5_0000691g0240 Nicotiana tabacum HOM05D003984 ORTHO05D004740 1.3e-111 406.8 263 78.7
Glyma.10G294300 Glycine max HOM05D003984 ORTHO05D004740 1.7e-111 406.4 267 78.3
Sabra08G0032300 Salix brachista HOM05D003984 ORTHO05D004740 2.2e-111 406.0 273 77.7
FvH4_7g20520 Fragaria vesca HOM05D003984 ORTHO05D004740 3.8e-111 405.2 267 78.3
TAR633G2252 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.8e-111 405.2 262 78.2
arahy.Tifrunner.gnm1.ann1.V3HSKN Arachis hypogaea HOM05D003984 ORTHO05D004740 5.0e-111 404.8 265 78.1
Nn2g10608 Nelumbo nucifera HOM05D003984 ORTHO05D004740 6.5e-111 404.4 269 76.2
TPR.G10390 Trifolium pratense HOM05D003984 ORTHO05D004740 6.5e-111 404.4 268 77.6
Psat6g240040 Pisum sativum HOM05D003984 ORTHO05D004740 8.5e-111 404.1 265 77.4
Gohir.A05G343700 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.1e-110 403.7 265 77.0
VMungo0720G0811 Vigna mungo HOM05D003984 ORTHO05D004740 1.1e-110 403.7 266 78.9
Glyma.20G244200 Glycine max HOM05D003984 ORTHO05D004740 2.5e-110 402.5 267 78.7
Gohir.D10G216200 Gossypium hirsutum HOM05D003984 ORTHO05D004740 5.5e-110 401.4 265 77.7
Gorai.011G241800 Gossypium raimondii HOM05D003984 ORTHO05D004740 5.5e-110 401.4 265 77.7
SGA_v2.0_scaffold329G48849 Striga asiatica HOM05D003984 ORTHO05D004740 5.5e-110 401.4 261 80.1
Lalb_Chr02g0144171 Lupinus albus HOM05D003984 ORTHO05D004740 9.3e-110 400.6 270 77.4
Phvul.007G005800 Phaseolus vulgaris HOM05D003984 ORTHO05D004740 2.7e-109 399.1 268 78.7
Ah.10g033080 Amaranthus hybridus HOM05D003984 ORTHO05D004740 3.6e-109 398.7 290 73.4
CAN.G186.31 Capsicum annuum HOM05D003984 ORTHO05D004740 4.6e-109 398.3 262 77.5
DCAR_019150 Daucus carota HOM05D003984 ORTHO05D004740 4.6e-109 398.3 266 75.9
Rhsim09G0154900 Rhododendron simsii HOM05D003984 ORTHO05D004740 6.1e-109 397.9 315 68.9
PGSC0003DMG400032551 Solanum tuberosum HOM05D003984 ORTHO05D004740 1.3e-108 396.7 262 77.5
TWI63G0288 Tripterygium wilfordii HOM05D003984 ORTHO05D004740 3.0e-108 395.6 256 80.9
HanXRQChr12g0367731 Helianthus annuus HOM05D003984 ORTHO05D004740 3.9e-108 395.2 266 76.7
Gohir.A10G208060 Gossypium hirsutum HOM05D003984 ORTHO05D004740 1.1e-107 393.7 265 77.0
Solyc04g009550.3 Solanum lycopersicum HOM05D003984 ORTHO05D004740 5.7e-107 391.3 262 76.0
PSO384G2137 Papaver somniferum HOM05D003984 ORTHO05D004740 7.4e-107 391.0 265 74.7
THA.LOC104825886 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 1.3e-106 390.2 262 76.3
Nitab4.5_0004104g0120 Nicotiana tabacum HOM05D003984 ORTHO05D004740 2.8e-106 389.0 250 80.4
Nn2g12956 Nelumbo nucifera HOM05D003984 ORTHO05D004740 1.8e-105 386.3 268 74.3
PSO339G0239 Papaver somniferum HOM05D003984 ORTHO05D004740 5.3e-105 384.8 265 74.0
Oeu057248.1 Olea europaea HOM05D003984 ORTHO05D004740 9.1e-105 384.0 254 77.2
Migut.F01787 Erythranthe guttata HOM05D003984 ORTHO05D004740 1.5e-104 383.3 261 77.0
Lj1A928T58 Lonicera japonica HOM05D003984 ORTHO05D004740 1.5e-104 383.3 308 68.5
Sed0000226 Sechium edule HOM05D003984 ORTHO05D004740 7.7e-104 380.9 265 74.7
arahy.Tifrunner.gnm1.ann1.B234YK Arachis hypogaea HOM05D003984 ORTHO05D004740 5.0e-103 378.3 318 64.8
THA.LOC104824242 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 6.5e-103 377.9 260 75.0
TAR623G0696 Trochodendron aralioides HOM05D003984 ORTHO05D004740 1.1e-102 377.1 251 76.9
ECA238G2056 Erigeron canadensis HOM05D003984 ORTHO05D004740 5.5e-102 374.8 258 75.6
DCAR_015251 Daucus carota HOM05D003984 ORTHO05D004740 9.4e-102 374.0 250 76.8
THA.LOC104810167 Tarenaya hassleriana HOM05D003984 ORTHO05D004740 2.7e-101 372.5 248 76.6
Haze_16954 Corylus avellana HOM05D003984 ORTHO05D004740 6.1e-101 371.3 238 79.0
HanXRQChr07g0200921 Helianthus annuus HOM05D003984 ORTHO05D004740 2.3e-100 369.4 257 74.3
ATR0594G132 Amborella trichopoda HOM05D003984 ORTHO05D004740 6.7e-100 367.9 270 72.2
Sabra10G0166500 Salix brachista HOM05D003984 ORTHO05D004740 8.8e-100 367.5 283 71.4
PSO339G2647 Papaver somniferum HOM05D003984 ORTHO05D004740 2.6e-99 365.9 269 71.0
Aqoxy4G03159 Aquilegia oxysepala HOM05D003984 ORTHO05D004740 1.1e-97 360.5 280 68.6
HPP92_017944 Vanilla planifolia HOM05D003984 ORTHO05D004740 1.8e-97 359.8 265 70.9
Lsat_1_v5_gn_2_115481 Lactuca sativa HOM05D003984 ORTHO05D004740 3.1e-97 359.0 250 74.8
CDE09G0608 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.6e-96 355.9 268 69.8
Ca_11380_v3 Cicer arietinum L. HOM05D003984 ORTHO05D004740 3.4e-96 355.5 275 70.2
SalBow3G2899 Salvia bowleyana HOM05D003984 ORTHO05D004740 3.4e-96 355.5 257 73.5
HPP92_019786 Vanilla planifolia HOM05D003984 ORTHO05D004740 3.4e-96 355.5 264 68.9
AL5G36110 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 2.2e-95 352.8 260 70.4
Lsat_1_v5_gn_8_21240 Lactuca sativa HOM05D003984 ORTHO05D004740 1.1e-94 350.5 267 70.0
Aa31sc33G70 Aethionema arabicum HOM05D003984 ORTHO05D004740 1.9e-94 349.7 263 69.6
Thhalv10010647m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 2.5e-94 349.4 260 69.6
C06p22550 Brassica napus HOM05D003984 ORTHO05D004740 4.2e-94 348.6 261 69.7
Os11g0102600 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 5.5e-94 348.2 257 70.4
Os12g0102200 Oryza sativa ssp. japonica HOM05D003984 ORTHO05D004740 5.5e-94 348.2 257 70.4
BcaB02g07705 Brassica carinata HOM05D003984 ORTHO05D004740 1.6e-93 346.7 260 69.2
A07p22390 Brassica napus HOM05D003984 ORTHO05D004740 1.6e-93 346.7 260 69.2
Carub.0005s2162 Capsella rubella HOM05D003984 ORTHO05D004740 1.6e-93 346.7 260 69.2
BcaC08g44716 Brassica carinata HOM05D003984 ORTHO05D004740 2.7e-93 345.9 261 69.0
AT3G55000 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 6.1e-93 344.7 260 69.2
AL5G36120 Arabidopsis lyrata HOM05D003984 ORTHO05D004740 1.0e-92 344.0 261 68.2
BolC6t37445H Brassica oleracea HOM05D003984 ORTHO05D004740 1.0e-92 344.0 260 68.5
HanXRQChr14g0460861 Helianthus annuus HOM05D003984 ORTHO05D004740 5.2e-92 341.7 264 70.5
Gohir.D04G082100 Gossypium hirsutum HOM05D003984 ORTHO05D004740 8.8e-92 340.9 225 77.3
Zm00001eb163130 Zea mays HOM05D003984 ORTHO05D004740 3.3e-91 339.0 255 68.2
AT3G55005 Arabidopsis thaliana HOM05D003984 ORTHO05D004740 5.7e-91 338.2 262 67.2
Sc20g0002240 Simmondsia chinensis HOM05D003984 ORTHO05D004740 9.7e-91 337.4 261 68.2
Zm00001eb094350 Zea mays HOM05D003984 ORTHO05D004740 9.7e-91 337.4 256 68.4
Lj1C926T5 Lonicera japonica HOM05D003984 ORTHO05D004740 2.8e-90 335.9 268 67.2
BraA07t29915Z Brassica rapa HOM05D003984 ORTHO05D004740 4.8e-90 335.1 279 64.5
unitig_0.g190 Utricularia gibba HOM05D003984 ORTHO05D004740 6.3e-90 334.7 235 75.3
Sp5g07420 Schrenkiella parvula HOM05D003984 ORTHO05D004740 8.2e-90 334.3 260 66.9
Sp5g07430 Schrenkiella parvula HOM05D003984 ORTHO05D004740 1.8e-89 333.2 259 68.7
Carub.0005s2163 Capsella rubella HOM05D003984 ORTHO05D004740 2.4e-89 332.8 259 66.4
CARHR165000 Cardamine hirsuta HOM05D003984 ORTHO05D004740 7.0e-89 331.3 260 67.7
CDE02G0952 Ceratophyllum demersum HOM05D003984 ORTHO05D004740 2.9e-87 325.9 253 68.4
CARHR165010 Cardamine hirsuta HOM05D003984 ORTHO05D004740 5.0e-87 325.1 262 64.9
MELO3C025490.2 Cucumis melo HOM05D003984 ORTHO05D004740 5.5e-86 321.6 205 82.0
BraA09t40255Z Brassica rapa HOM05D003984 ORTHO05D004740 1.5e-83 313.5 259 62.5
MSTRG.9196 Avicennia marina HOM05D003984 ORTHO05D004740 4.4e-83 312.0 198 80.3
C08p30240 Brassica napus HOM05D003984 ORTHO05D004740 1.7e-82 310.1 265 62.3
A09p48020 Brassica napus HOM05D003984 ORTHO05D004740 3.7e-82 308.9 259 62.2
BcaNung04652 Brassica carinata HOM05D003984 ORTHO05D004740 1.0e-79 300.8 265 60.8
Sopen04g004710 Solanum pennellii HOM05D003984 ORTHO05D004740 2.7e-77 292.7 195 77.9
BcaB01g00136 Brassica carinata HOM05D003984 ORTHO05D004740 3.6e-77 292.4 262 59.9
BolC8t50631H Brassica oleracea HOM05D003984 ORTHO05D004740 1.4e-76 290.4 261 59.8
Thhalv10010676m.g Eutrema salsugineum HOM05D003984 ORTHO05D004740 5.7e-75 285.0 239 65.3
Sc20g0002230 Simmondsia chinensis HOM05D003984 ORTHO05D004740 3.1e-73 279.3 190 76.3
FAN01G2342 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.8e-68 263.5 144 90.3
FAN06G1180 Fragaria x ananassa HOM05D003984 ORTHO05D004740 6.6e-63 245.0 174 71.8
AagrBONN_evm.TU.Sc2ySwM_344.1695 Anthoceros agrestis HOM05D003984 ORTHO05D004740 1.2e-43 181.0 219 49.3
SEGI_35779 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 7.5e-43 178.3 242 44.6
Mapoly0066s0078 Marchantia polymorpha HOM05D003984 ORTHO05D004740 3.9e-39 166.0 188 53.2
Pp3c14_5580 Physcomitrium patens HOM05D003984 ORTHO05D004740 1.6e-37 160.6 151 54.3
Actinidia29191 Actinidia chinensis HOM05D003984 ORTHO05D004740 1.7e-34 150.6 121 67.8
Cpa.g.sc1.281 Carica papaya HOM05D003984 ORTHO05D004740 3.9e-31 139.4 106 68.9
TAR624G0784 Trochodendron aralioides HOM05D003984 ORTHO05D004740 3.3e-30 136.3 93 76.3
FAN06G2469 Fragaria x ananassa HOM05D003984 ORTHO05D004740 1.2e-27 127.9 74 90.5
CBR_g37750 Chara braunii HOM05D000019 ORTHO05D000002 6.4e-26 122.1 228 38.6
SEGI_13922 Sequoiadendron giganteum HOM05D003984 ORTHO05D004740 9.3e-25 118.2 89 71.9
AUR62035988 Chenopodium quinoa HOM05D003984 ORTHO05D004740 3.4e-19 99.8 92 57.6
SMO356G0399 Selaginella moellendorffii HOM05D003984 ORTHO05D004740 7.6e-19 98.6 176 38.1
CBR_g10977 Chara braunii HOM05D003984 ORTHO05D004740 7.9e-16 88.6 188 33.0
HanXRQChr17g0557371 Helianthus annuus HOM05D000549 ORTHO05D004740 2.8e-13 80.1 41 85.4
Nn6g33815 Nelumbo nucifera HOM05D003984 ORTHO05D004740 2.8e-13 80.1 41 85.4
CSS0046661 Camellia sinensis var. sinensis HOM05D003984 ORTHO05D004740 4.0e-12 76.3 40 85.0
RcHm_v2.0_Chr2g0140211 Rosa chinensis HOM05D003984 ORTHO05D004740 7.6e-11 72.0 43 69.8
PRCOL_00000040 Prasinoderma coloniale HOM05D003984 ORTHO05D004740 7.1e-09 65.5 137 35.0
SHI42769 Sapria himalayana HOM05D003984 ORTHO05D004740 7.1e-09 65.5 122 38.5
MCO05G642 Micromonas commoda HOM05D003984 ORTHO05D004740 1.8e-07 60.8 85 36.5


User provided reference genes

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