Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01132 Eucalyptus grandis HOM05D007035 ORTHO05D008774 1.0e-75 286.6 136 100.0
Eucgr.J02513 Eucalyptus grandis HOM05D007035 ORTHO05D008774 2.1e-52 209.1 149 74.5
Dinv40155 Davidia involucrata HOM05D002155 ORTHO05D002215 1.8e-40 169.5 147 57.8
PGR102G2581 Punica granatum HOM05D007035 ORTHO05D008774 3.1e-40 168.7 145 58.6
Thecc.01G009700 Theobroma cacao HOM05D007035 ORTHO05D008774 2.6e-39 165.6 147 59.2
CiPaw.07G005600 Carya illinoinensis HOM05D007035 ORTHO05D008774 4.5e-39 164.9 145 56.6
Gorai.003G004700 Gossypium raimondii HOM05D007035 ORTHO05D008774 4.5e-39 164.9 147 56.5
QL06p052340 Quercus lobata HOM05D007035 ORTHO05D008774 1.3e-38 163.3 145 55.2
Gohir.A02G175400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 1.7e-38 162.9 147 55.8
Gohir.D03G004400 Gossypium hirsutum HOM05D007035 ORTHO05D008774 2.2e-38 162.5 147 55.8
HanXRQChr07g0192541 Helianthus annuus HOM05D007035 ORTHO05D008774 2.9e-38 162.2 145 55.2
AT2G17695 Arabidopsis thaliana HOM05D007035 ORTHO05D008774 6.4e-38 161.0 145 53.8
QL06p052348 Quercus lobata HOM05D007035 ORTHO05D008774 6.4e-38 161.0 145 54.5
AL3G50680 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 1.1e-37 160.2 145 53.1
Ca_03644_v3 Cicer arietinum L. HOM05D007035 ORTHO05D008774 1.9e-37 159.5 145 55.9
Manes.02G111400 Manihot esculenta HOM05D007035 ORTHO05D008774 1.9e-37 159.5 145 55.2
Nitab4.5_0001696g0080 Nicotiana tabacum HOM05D007035 ORTHO05D008774 1.9e-37 159.5 145 55.9
Prupe.7G176600 Prunus persica HOM05D007035 ORTHO05D008774 2.4e-37 159.1 145 55.2
Ciclev10026505m.g Citrus clementina HOM05D007035 ORTHO05D008774 3.2e-37 158.7 145 55.2
Hma1.2p1_0315F.1_g122740 Hydrangea macrophylla HOM05D007035 ORTHO05D008774 4.2e-37 158.3 145 55.2
C03p58600 Brassica napus HOM05D007035 ORTHO05D008774 5.5e-37 157.9 145 53.1
MD02G1242600 Malus domestica HOM05D007035 ORTHO05D008774 5.5e-37 157.9 145 53.8
SGA_v2.0_scaffold229G43297 Striga asiatica HOM05D001343 ORTHO05D002008 5.5e-37 157.9 145 53.8
Carub.0003s3179 Capsella rubella HOM05D007035 ORTHO05D008774 7.1e-37 157.5 145 52.4
Actinidia17600 Actinidia chinensis HOM05D007035 ORTHO05D008774 1.2e-36 156.8 145 54.5
Cfa015701 Carpinus fangiana HOM05D007035 ORTHO05D008774 1.2e-36 156.8 145 52.4
Lsat_1_v5_gn_2_75101 Lactuca sativa HOM05D007035 ORTHO05D008774 1.6e-36 156.4 145 52.4
THA.LOC104807437 Tarenaya hassleriana HOM05D007035 ORTHO05D008774 1.6e-36 156.4 145 54.5
Atru.chr3.931 Acer truncatum HOM05D007035 ORTHO05D008774 2.1e-36 156.0 146 55.5
BcaC01g02899 Brassica carinata HOM05D007035 ORTHO05D008774 2.7e-36 155.6 145 52.4
BolC3t18121H Brassica oleracea HOM05D007035 ORTHO05D008774 2.7e-36 155.6 145 52.4
CSS0018213 Camellia sinensis var. sinensis HOM05D007035 ORTHO05D008774 2.7e-36 155.6 145 53.1
FvH4_1g10900 Fragaria vesca HOM05D007035 ORTHO05D008774 3.5e-36 155.2 145 52.4
FAN26G0170 Fragaria x ananassa HOM05D007035 ORTHO05D008774 3.5e-36 155.2 145 52.4
RcHm_v2.0_Chr2g0098161 Rosa chinensis HOM05D007035 ORTHO05D008774 4.6e-36 154.8 145 52.4
Sp3g31080 Schrenkiella parvula HOM05D007035 ORTHO05D008774 4.6e-36 154.8 145 51.0
Solyc02g083180.4 Solanum lycopersicum HOM05D007035 ORTHO05D008774 4.6e-36 154.8 145 55.2
Sopen02g027940 Solanum pennellii HOM05D007035 ORTHO05D008774 4.6e-36 154.8 145 55.2
BraA06t26305Z Brassica rapa HOM05D007035 ORTHO05D008774 6.0e-36 154.5 145 51.7
Rhsim08G0078500 Rhododendron simsii HOM05D007035 ORTHO05D008774 6.0e-36 154.5 145 53.1
A06p33710 Brassica napus HOM05D007035 ORTHO05D008774 7.9e-36 154.1 145 51.0
Lalb_Chr05g0229721 Lupinus albus HOM05D007035 ORTHO05D008774 7.9e-36 154.1 145 54.5
FAN19G1923 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.3e-35 153.3 145 51.7
FAN28G2890 Fragaria x ananassa HOM05D007035 ORTHO05D008774 1.3e-35 153.3 145 51.7
CAN.G890.13 Capsicum annuum HOM05D007035 ORTHO05D008774 1.8e-35 152.9 145 53.8
TWI59G1021 Tripterygium wilfordii HOM05D007035 ORTHO05D008774 1.8e-35 152.9 145 53.8
vmacro18445 Vaccinium macrocarpon HOM05D007035 ORTHO05D008774 2.3e-35 152.5 145 52.4
BcaB08g34751 Brassica carinata HOM05D007035 ORTHO05D008774 3.0e-35 152.1 145 51.7
TPR.G32013 Trifolium pratense HOM05D007035 ORTHO05D008774 3.0e-35 152.1 145 53.1
Migut.L00741 Erythranthe guttata HOM05D007035 ORTHO05D008774 3.9e-35 151.8 145 51.0
Cpa.g.sc6.337 Carica papaya HOM05D007035 ORTHO05D008774 6.7e-35 151.0 145 53.8
Thhalv10022849m.g Eutrema salsugineum HOM05D007035 ORTHO05D008774 6.7e-35 151.0 145 50.3
Medtr8g074720 Medicago truncatula HOM05D007035 ORTHO05D008774 6.7e-35 151.0 145 54.5
PGSC0003DMG400001578 Solanum tuberosum HOM05D007035 ORTHO05D008774 6.7e-35 151.0 145 54.5
Cc07_g12370 Coffea canephora HOM05D007035 ORTHO05D008774 8.7e-35 150.6 145 53.8
DCAR_027629 Daucus carota HOM05D007035 ORTHO05D008774 8.7e-35 150.6 145 53.8
Glyma.16G120900 Glycine max HOM05D007035 ORTHO05D008774 8.7e-35 150.6 145 54.5
Potri.005G105500 Populus trichocarpa HOM05D007035 ORTHO05D008774 8.7e-35 150.6 147 53.7
Lj4g0012539 Lotus japonicus HOM05D007035 ORTHO05D008774 4.3e-34 148.3 145 51.7
Phvul.003G267600 Phaseolus vulgaris HOM05D007035 ORTHO05D008774 4.3e-34 148.3 145 52.4
Oeu008100.1 Olea europaea HOM05D007035 ORTHO05D008774 5.6e-34 147.9 145 51.7
MSTRG.15590 Avicennia marina HOM05D007035 ORTHO05D008774 7.4e-34 147.5 145 51.0
FAN23G2784 Fragaria x ananassa HOM05D007035 ORTHO05D008774 7.4e-34 147.5 145 50.3
EL10Ac9g22991 Beta vulgaris HOM05D007035 ORTHO05D008774 9.6e-34 147.1 145 52.4
Psat4g103040 Pisum sativum HOM05D007035 ORTHO05D008774 9.6e-34 147.1 145 51.0
Hund08627 Selenicereus undatus HOM05D007035 ORTHO05D008774 1.3e-33 146.7 145 50.3
Nn6g31845 Nelumbo nucifera HOM05D007035 ORTHO05D008774 2.1e-33 146.0 145 49.7
Ah.10g032510 Amaranthus hybridus HOM05D007035 ORTHO05D008774 2.8e-33 145.6 145 51.0
MELO3C007951.2 Cucumis melo HOM05D007035 ORTHO05D008774 2.8e-33 145.6 145 49.0
GSVIVG01006258001 Vitis vinifera HOM05D007035 ORTHO05D008774 2.8e-33 145.6 147 49.7
Duzib147G1308 Durio zibethinus HOM05D007035 ORTHO05D008774 3.7e-33 145.2 168 47.6
ECA238G0027 Erigeron canadensis HOM05D007035 ORTHO05D008774 6.2e-33 144.4 148 50.7
Sed0013381 Sechium edule HOM05D007035 ORTHO05D008774 8.2e-33 144.1 145 47.6
TAR628G1604 Trochodendron aralioides HOM05D007035 ORTHO05D008774 1.1e-32 143.7 145 49.7
ClCG01G020680 Citrullus lanatus HOM05D007035 ORTHO05D008774 1.4e-32 143.3 145 49.0
CsaV3_6G047600 Cucumis sativus L. HOM05D007035 ORTHO05D008774 1.8e-32 142.9 146 49.3
arahy.Tifrunner.gnm1.ann1.JN68AD Arachis hypogaea HOM05D007035 ORTHO05D008774 5.3e-32 141.4 148 50.7
arahy.Tifrunner.gnm1.ann1.Y2NACG Arachis hypogaea HOM05D007035 ORTHO05D008774 5.3e-32 141.4 148 50.7
CANSAT25G1910 Cannabis sativa HOM05D007035 ORTHO05D008774 5.3e-32 141.4 147 51.0
Lj4A228G16 Lonicera japonica HOM05D007035 ORTHO05D008774 1.7e-30 136.3 127 54.3
Sc20g0005390 Simmondsia chinensis HOM05D007035 ORTHO05D008774 2.9e-30 135.6 128 53.1
SalBow5G2770 Salvia bowleyana HOM05D007035 ORTHO05D008774 4.9e-30 134.8 145 46.2
COL.COLO4_22513 Corchorus olitorius HOM05D007035 ORTHO05D008774 6.5e-30 134.4 126 54.8
AL3G27500 Arabidopsis lyrata HOM05D007035 ORTHO05D008774 1.9e-29 132.9 133 48.1
Aqoxy6G01870 Aquilegia oxysepala HOM05D007035 ORTHO05D008774 1.6e-28 129.8 150 46.0
PSO675G7652 Papaver somniferum HOM05D007035 ORTHO05D008774 2.1e-28 129.4 148 47.3
CDE09G0622 Ceratophyllum demersum HOM05D007035 ORTHO05D008774 3.5e-28 128.6 146 46.6
PSO541G4772 Papaver somniferum HOM05D007035 ORTHO05D008774 4.6e-28 128.3 148 46.6
Aa31LG8G14960 Aethionema arabicum HOM05D000088 ORTHO05D000933 6.7e-27 124.4 123 51.2
unitig_88.g27771 Utricularia gibba HOM05D007035 ORTHO05D008774 9.7e-26 120.6 147 43.5
VMungo0251G2208 Vigna mungo HOM05D007035 ORTHO05D008774 3.7e-25 118.6 125 52.0
MBI05_g35104_MAGBIO Magnolia biondii HOM05D007035 ORTHO05D008774 4.1e-24 115.2 152 42.8
Peaxi162Scf00300g00123 Petunia axillaris HOM05D007035 ORTHO05D008774 2.9e-22 109.0 115 51.3
AUR62032933 Chenopodium quinoa HOM05D007035 ORTHO05D008774 1.4e-21 106.7 106 53.8
Prupe.1G268600 Prunus persica HOM05D007035 ORTHO05D008774 2.7e-20 102.4 78 60.3
Pp3c1_37080 Physcomitrium patens HOM05D007035 ORTHO05D008774 3.6e-20 102.1 157 35.7
Prupe.6G001100 Prunus persica HOM05D007035 ORTHO05D008774 1.0e-19 100.5 78 59.0
HPP92_014997 Vanilla planifolia HOM05D007035 ORTHO05D008774 2.3e-19 99.4 152 36.8
AagrBONN_evm.TU.Sc2ySwM_117.3401 Anthoceros agrestis HOM05D007035 ORTHO05D008774 5.3e-16 88.2 157 33.1
ATR0661G057 Amborella trichopoda HOM05D007035 ORTHO05D008774 4.5e-15 85.1 128 37.5
Os03g0107600 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 7.7e-15 84.3 156 33.3
Os04g0119300 Oryza sativa ssp. japonica HOM05D007035 ORTHO05D008774 7.7e-15 84.3 156 33.3
SEGI_40855 Sequoiadendron giganteum HOM05D007035 ORTHO05D008774 7.7e-15 84.3 168 31.5
Zm00001eb241510 Zea mays HOM05D007035 ORTHO05D008774 1.7e-14 83.2 157 32.5
Mapoly0027s0184 Marchantia polymorpha HOM05D007035 ORTHO05D008774 2.9e-14 82.4 159 30.8
RcHm_v2.0_Chr5g0036401 Rosa chinensis HOM05D007035 ORTHO05D008774 4.2e-13 78.6 102 43.1
AUR62017739 Chenopodium quinoa HOM05D007035 ORTHO05D008774 3.3e-10 68.9 44 70.5
CARHR107960 Cardamine hirsuta HOM05D007035 ORTHO05D008774 6.3e-09 64.7 44 59.1


User provided reference genes

Program Settings