Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 1.1e-106 389.8 183 100.0
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 1.7e-81 306.2 180 76.1
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.7e-81 306.2 180 76.7
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 1.1e-80 303.5 187 76.5
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 5.4e-80 301.2 180 76.7
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 7.0e-80 300.8 180 77.2
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 1.6e-79 299.7 180 76.1
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 1.6e-79 299.7 180 75.0
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 2.0e-79 299.3 180 76.7
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 3.5e-79 298.5 185 75.7
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 7.8e-79 297.4 180 73.3
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.0e-78 297.0 180 75.0
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.3e-78 296.6 180 76.1
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 1.3e-78 296.6 181 75.1
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.3e-78 295.8 182 74.2
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 2.3e-78 295.8 171 78.9
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 2.9e-78 295.4 185 75.1
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.9e-78 295.4 185 75.1
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 3.8e-78 295.0 182 74.2
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 5.0e-78 294.7 180 74.4
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 8.6e-78 293.9 182 74.2
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 3.3e-77 292.0 179 74.9
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 3.6e-76 288.5 180 74.4
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 6.1e-76 287.7 180 73.3
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 1.0e-75 287.0 180 74.4
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 1.4e-75 286.6 182 72.0
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.8e-75 286.2 185 73.0
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 1.8e-75 286.2 181 72.9
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 2.3e-75 285.8 180 73.9
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.0e-75 285.4 185 72.4
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 4.0e-75 285.0 184 71.7
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 5.2e-75 284.6 180 72.2
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 5.2e-75 284.6 180 72.8
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 5.2e-75 284.6 180 71.1
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 6.8e-75 284.3 180 72.8
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 8.9e-75 283.9 180 74.4
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 8.9e-75 283.9 183 73.8
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 1.5e-74 283.1 179 73.7
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 4.4e-74 281.6 182 74.2
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 5.8e-74 281.2 183 72.1
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 5.8e-74 281.2 180 72.2
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 5.8e-74 281.2 183 71.0
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 1.7e-73 279.6 180 71.1
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 2.2e-73 279.3 180 74.4
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 4.9e-73 278.1 180 73.3
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 2.4e-72 275.8 180 70.0
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 2.4e-72 275.8 180 72.2
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 9.2e-72 273.9 184 70.1
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 1.2e-71 273.5 181 69.1
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 1.2e-71 273.5 182 70.9
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 2.0e-71 272.7 180 68.9
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 2.0e-71 272.7 180 71.7
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 4.6e-71 271.6 182 69.8
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 1.3e-70 270.0 183 68.9
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 3.9e-70 268.5 178 70.2
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 1.1e-69 266.9 162 75.9
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 1.1e-69 266.9 183 67.8
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.5e-69 266.5 181 71.3
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 9.5e-69 263.8 161 75.8
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 9.5e-69 263.8 180 71.1
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 1.6e-68 263.1 159 76.7
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 2.8e-68 262.3 160 74.4
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 1.4e-67 260.0 183 66.1
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 1.4e-67 260.0 178 69.1
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 2.3e-67 259.2 174 69.5
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 2.3e-67 259.2 182 67.6
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 1.5e-66 256.5 183 65.0
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 2.0e-66 256.1 181 64.6
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 2.6e-66 255.8 159 74.2
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 4.4e-66 255.0 181 63.5
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 1.3e-65 253.4 181 64.1
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 1.3e-65 253.4 181 67.4
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.7e-65 253.1 180 67.2
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 1.7e-65 253.1 178 68.0
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 4.9e-65 251.5 192 60.9
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 3.2e-64 248.8 179 65.9
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 5.4e-64 248.1 195 62.1
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 5.4e-64 248.1 181 65.2
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 5.4e-64 248.1 180 63.9
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 5.4e-64 248.1 179 62.6
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 7.0e-64 247.7 181 64.1
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 9.2e-64 247.3 180 63.9
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 9.2e-64 247.3 180 63.9
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 1.2e-63 246.9 199 61.3
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.0e-63 246.1 179 64.2
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 2.0e-63 246.1 185 64.3
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 3.5e-63 245.4 180 63.9
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.3e-62 243.4 192 62.5
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 1.7e-62 243.0 165 68.5
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 1.5e-61 240.0 190 62.1
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.9e-61 239.6 181 63.5
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.9e-61 239.6 181 63.5
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.5e-61 239.2 176 63.6
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 7.3e-61 237.7 180 63.3
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 9.5e-61 237.3 176 64.2
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.6e-60 236.5 180 62.8
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 6.2e-60 234.6 159 66.7
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 8.1e-60 234.2 182 64.3
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 8.1e-60 234.2 183 60.1
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 3.1e-59 232.3 180 61.7
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 6.8e-59 231.1 183 60.1
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.3e-57 226.9 150 68.0
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.7e-57 226.5 162 67.9
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 3.7e-57 225.3 178 58.4
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 3.2e-56 222.2 181 58.0
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 5.4e-56 221.5 137 75.9
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 4.6e-55 218.4 161 66.5
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 4.6e-55 218.4 183 57.4
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 6.0e-55 218.0 173 62.4
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 3.1e-51 205.7 133 72.2
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 5.8e-50 201.4 183 52.5
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 4.9e-49 198.4 162 61.1
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 4.1e-48 195.3 133 68.4
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 1.7e-46 189.9 133 61.7
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.9e-46 188.7 168 52.4
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.1e-46 188.3 166 53.0
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 8.7e-46 187.6 187 50.8
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.3e-45 185.3 168 52.4
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 2.1e-44 183.0 112 73.2
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 6.2e-44 181.4 122 68.9
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 9.0e-43 177.6 162 51.9
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.2e-42 177.2 163 50.9
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 3.4e-42 175.6 182 51.1
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 4.6e-39 165.2 177 45.8
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.7e-38 161.0 136 53.7
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 1.3e-36 157.1 182 44.5
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 4.0e-35 152.1 180 46.1
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 9.0e-35 151.0 125 56.0
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.0e-34 149.8 168 45.8
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 8.4e-33 144.4 114 59.6
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 1.4e-32 143.7 90 70.0
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.3e-30 136.3 88 71.6
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 5.8e-26 121.7 191 37.7
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 6.7e-22 108.2 114 47.4
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.7e-22 108.2 98 49.0
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 2.3e-14 83.2 44 86.4
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 5.3e-11 72.0 46 71.7
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 2.6e-10 69.7 45 66.7
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 2.6e-10 69.7 46 67.4
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 2.6e-10 69.7 46 67.4
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.1e-08 64.3 53 54.7
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 2.5e-08 63.2 108 38.0
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 2.7e-07 59.7 44 61.4


User provided reference genes

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