Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01111 Eucalyptus grandis HOM05D005690 ORTHO05D007075 6.5e-134 480.7 240 100.0
Manes.07G103000 Manihot esculenta HOM05D005690 ORTHO05D007075 2.7e-95 352.4 240 74.2
PGR044G2452 Punica granatum HOM05D005690 ORTHO05D007075 5.9e-95 351.3 240 72.9
Cfa001602 Carpinus fangiana HOM05D005690 ORTHO05D007075 8.6e-94 347.4 244 73.4
GSVIVG01016316001 Vitis vinifera HOM05D005690 ORTHO05D007075 8.6e-94 347.4 245 73.5
RcHm_v2.0_Chr1g0363981 Rosa chinensis HOM05D005690 ORTHO05D007075 5.6e-93 344.7 247 72.1
Thecc.10G069500 Theobroma cacao HOM05D005690 ORTHO05D007075 9.5e-93 344.0 243 72.8
FvH4_7g20020 Fragaria vesca HOM05D005690 ORTHO05D007075 8.0e-92 340.9 243 72.0
FAN03G1698 Fragaria x ananassa HOM05D005690 ORTHO05D007075 8.0e-92 340.9 243 72.0
FAN06G0212 Fragaria x ananassa HOM05D005690 ORTHO05D007075 8.0e-92 340.9 243 72.0
FAN10G0816 Fragaria x ananassa HOM05D005690 ORTHO05D007075 8.0e-92 340.9 243 72.0
Nitab4.5_0012288g0020 Nicotiana tabacum HOM05D005690 ORTHO05D007075 8.0e-92 340.9 243 72.0
Ciclev10032614m.g Citrus clementina HOM05D005690 ORTHO05D007075 1.0e-91 340.5 243 74.5
Gohir.D06G176800 Gossypium hirsutum HOM05D005690 ORTHO05D007075 5.2e-91 338.2 243 72.0
Gorai.010G204700 Gossypium raimondii HOM05D005690 ORTHO05D007075 5.2e-91 338.2 243 72.0
CiPaw.02G175700 Carya illinoinensis HOM05D005690 ORTHO05D007075 6.8e-91 337.8 247 72.5
Peaxi162Scf00108g00166 Petunia axillaris HOM05D005690 ORTHO05D007075 1.2e-90 337.0 243 71.6
MD01G1111700 Malus domestica HOM05D005690 ORTHO05D007075 2.6e-90 335.9 243 72.8
TAR636G2049 Trochodendron aralioides HOM05D005690 ORTHO05D007075 3.4e-90 335.5 248 72.2
Haze_16926 Corylus avellana HOM05D005690 ORTHO05D007075 5.7e-90 334.7 244 72.1
FAN01G0973 Fragaria x ananassa HOM05D005690 ORTHO05D007075 7.5e-90 334.3 243 71.2
Gohir.A06G178200 Gossypium hirsutum HOM05D005690 ORTHO05D007075 7.5e-90 334.3 243 71.6
Duzib114G0556 Durio zibethinus HOM05D005690 ORTHO05D007075 1.3e-89 333.6 243 70.4
Glyma.17G183500 Glycine max HOM05D005690 ORTHO05D007075 1.3e-89 333.6 249 70.7
COL.COLO4_32034 Corchorus olitorius HOM05D005690 ORTHO05D007075 1.7e-89 333.2 248 73.0
Prupe.2G217200 Prunus persica HOM05D005690 ORTHO05D007075 2.2e-89 332.8 245 71.8
Dinv11797 Davidia involucrata HOM05D005690 ORTHO05D007075 3.7e-89 332.0 243 71.2
MD07G1177900 Malus domestica HOM05D005690 ORTHO05D007075 3.7e-89 332.0 243 71.2
Atru.chr12.697 Acer truncatum HOM05D005690 ORTHO05D007075 4.9e-89 331.6 244 72.1
Atru.chr12.670 Acer truncatum HOM05D005690 ORTHO05D007075 1.1e-88 330.5 243 72.0
MSTRG.373 Avicennia marina HOM05D005690 ORTHO05D007075 4.1e-88 328.6 240 71.2
Potri.010G219400 Populus trichocarpa HOM05D005690 ORTHO05D007075 4.1e-88 328.6 245 70.6
Nitab4.5_0000476g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 7.0e-88 327.8 243 70.4
Potri.008G042800 Populus trichocarpa HOM05D005690 ORTHO05D007075 7.0e-88 327.8 245 69.8
TAR633G2147 Trochodendron aralioides HOM05D005690 ORTHO05D007075 1.2e-87 327.0 242 69.0
arahy.Tifrunner.gnm1.ann1.08HL34 Arachis hypogaea HOM05D005690 ORTHO05D007075 2.7e-87 325.9 235 70.6
arahy.Tifrunner.gnm1.ann1.8E9GH8 Arachis hypogaea HOM05D005690 ORTHO05D007075 3.5e-87 325.5 234 70.5
Phvul.004G075000 Phaseolus vulgaris HOM05D005690 ORTHO05D007075 3.5e-87 325.5 243 70.4
Eucgr.J01110 Eucalyptus grandis HOM05D005690 ORTHO05D007075 4.6e-87 325.1 231 69.3
VMungo0464G0948 Vigna mungo HOM05D005690 ORTHO05D007075 1.0e-86 323.9 243 69.5
ECA232G2854 Erigeron canadensis HOM05D005690 ORTHO05D007075 1.7e-86 323.2 247 67.6
Sabra08G0029500 Salix brachista HOM05D005690 ORTHO05D007075 1.7e-86 323.2 251 68.1
Cpa.g.sc53.43 Carica papaya HOM05D005690 ORTHO05D007075 2.3e-86 322.8 243 71.6
Cc02_g11390 Coffea canephora HOM05D005690 ORTHO05D007075 2.3e-86 322.8 243 71.2
QL08p056659 Quercus lobata HOM05D005690 ORTHO05D007075 3.9e-86 322.0 244 69.3
Nitab4.5_0000233g0230 Nicotiana tabacum HOM05D005690 ORTHO05D007075 1.1e-85 320.5 213 74.6
MELO3C002879.2 Cucumis melo HOM05D005690 ORTHO05D007075 1.9e-85 319.7 246 70.7
MBI05_g11579_MAGBIO Magnolia biondii HOM05D005690 ORTHO05D007075 4.3e-85 318.5 192 81.8
CsaV3_5G025890 Cucumis sativus L. HOM05D005690 ORTHO05D007075 5.6e-85 318.2 246 70.3
Sabra10G0169300 Salix brachista HOM05D005690 ORTHO05D007075 5.6e-85 318.2 223 71.7
Lsat_1_v5_gn_9_67140 Lactuca sativa HOM05D005690 ORTHO05D007075 7.3e-85 317.8 249 65.9
TWI38G1302 Tripterygium wilfordii HOM05D005690 ORTHO05D007075 9.5e-85 317.4 247 66.4
CANSAT56G3535 Cannabis sativa HOM05D005690 ORTHO05D007075 1.6e-84 316.6 240 67.5
Ca_04676_v3 Cicer arietinum L. HOM05D005690 ORTHO05D007075 1.6e-84 316.6 251 67.3
Peaxi162Scf01175g00023 Petunia axillaris HOM05D005690 ORTHO05D007075 2.1e-84 316.2 231 69.3
Lalb_Chr19g0129571 Lupinus albus HOM05D005690 ORTHO05D007075 2.8e-84 315.8 245 69.0
Lj2g0014971 Lotus japonicus HOM05D005690 ORTHO05D007075 4.7e-84 315.1 254 67.3
Potri.010G219000 Populus trichocarpa HOM05D005690 ORTHO05D007075 8.0e-84 314.3 215 73.0
Sopen05g034500 Solanum pennellii HOM05D005690 ORTHO05D007075 1.0e-83 313.9 243 67.1
Nn2g13015 Nelumbo nucifera HOM05D005690 ORTHO05D007075 1.4e-83 313.5 189 82.0
Hma1.2p1_2080F.1_g313490 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 3.1e-83 312.4 256 66.8
Solyc05g056090.3 Solanum lycopersicum HOM05D005690 ORTHO05D007075 3.1e-83 312.4 243 66.7
HanXRQChr09g0246501 Helianthus annuus HOM05D005690 ORTHO05D007075 4.0e-83 312.0 249 65.5
CAN.G694.84 Capsicum annuum HOM05D005690 ORTHO05D007075 5.2e-83 311.6 243 66.7
Nitab4.5_0009003g0010 Nicotiana tabacum HOM05D005690 ORTHO05D007075 5.2e-83 311.6 204 75.0
Hund19342 Selenicereus undatus HOM05D005690 ORTHO05D007075 9.8e-82 307.4 246 65.0
PGSC0003DMG400023460 Solanum tuberosum HOM05D005690 ORTHO05D007075 2.2e-81 306.2 243 65.0
TPR.G36634 Trifolium pratense HOM05D005690 ORTHO05D007075 2.2e-81 306.2 255 65.9
HanXRQChr17g0563371 Helianthus annuus HOM05D005690 ORTHO05D007075 6.4e-81 304.7 189 76.7
Hma1.2p1_0453F.1_g156020 Hydrangea macrophylla HOM05D005690 ORTHO05D007075 1.9e-80 303.1 208 73.6
Medtr6g033405 Medicago truncatula HOM05D005690 ORTHO05D007075 3.2e-80 302.4 205 72.7
Sed0011214 Sechium edule HOM05D005690 ORTHO05D007075 3.2e-80 302.4 240 67.5
Rhsim09G0153300 Rhododendron simsii HOM05D005690 ORTHO05D007075 1.2e-79 300.4 230 67.8
THA.LOC104802837 Tarenaya hassleriana HOM05D005690 ORTHO05D007075 1.2e-79 300.4 244 66.0
Migut.F01989 Erythranthe guttata HOM05D005690 ORTHO05D007075 7.8e-79 297.7 242 66.5
Sed0019941 Sechium edule HOM05D005690 ORTHO05D007075 7.8e-79 297.7 238 67.2
ATR1159G074 Amborella trichopoda HOM05D005690 ORTHO05D007075 1.3e-78 297.0 205 74.1
unitig_0.g529 Utricularia gibba HOM05D005690 ORTHO05D007075 1.3e-78 297.0 189 75.1
AUR62020766 Chenopodium quinoa HOM05D005690 ORTHO05D007075 1.7e-78 296.6 245 63.7
AUR62027946 Chenopodium quinoa HOM05D005690 ORTHO05D007075 2.3e-78 296.2 245 63.3
SGA_v2.0_scaffold28G12052 Striga asiatica HOM05D005690 ORTHO05D007075 2.3e-78 296.2 240 67.9
Rhsim03G0123000 Rhododendron simsii HOM05D005690 ORTHO05D007075 8.6e-78 294.3 210 69.0
SalBow4G1295 Salvia bowleyana HOM05D005690 ORTHO05D007075 7.3e-77 291.2 228 65.4
vmacro04884 Vaccinium macrocarpon HOM05D005690 ORTHO05D007075 7.3e-77 291.2 211 69.7
Aa31LG9G7550 Aethionema arabicum HOM05D005690 ORTHO05D007075 9.5e-77 290.8 247 64.8
EL10Ac2g03578 Beta vulgaris HOM05D005690 ORTHO05D007075 1.2e-76 290.4 210 68.1
CDE04G0636 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 6.2e-76 288.1 250 63.6
Aqoxy6G02013 Aquilegia oxysepala HOM05D005690 ORTHO05D007075 8.1e-76 287.7 244 64.8
PSO339G2382 Papaver somniferum HOM05D005690 ORTHO05D007075 2.3e-75 286.2 250 64.4
PSO384G2564 Papaver somniferum HOM05D005690 ORTHO05D007075 8.9e-75 284.3 250 64.4
A04p27260 Brassica napus HOM05D005690 ORTHO05D007075 2.0e-74 283.1 256 62.5
Carub.0004s1755 Capsella rubella HOM05D005690 ORTHO05D007075 2.6e-74 282.7 250 64.4
ClCG09G020510 Citrullus lanatus HOM05D005690 ORTHO05D007075 4.4e-74 282.0 214 69.6
AT2G35790 Arabidopsis thaliana HOM05D005690 ORTHO05D007075 7.5e-74 281.2 250 64.0
BraA04t18224Z Brassica rapa HOM05D005690 ORTHO05D007075 9.8e-74 280.8 255 62.4
SalBow3G1299 Salvia bowleyana HOM05D005690 ORTHO05D007075 1.7e-73 280.0 240 62.1
Ah.16g108410 Amaranthus hybridus HOM05D005690 ORTHO05D007075 3.7e-73 278.9 201 67.2
AL4G31900 Arabidopsis lyrata HOM05D005690 ORTHO05D007075 3.7e-73 278.9 246 62.2
BolC4t27955H Brassica oleracea HOM05D005690 ORTHO05D007075 4.9e-73 278.5 248 62.9
HPP92_003607 Vanilla planifolia HOM05D005690 ORTHO05D007075 4.9e-73 278.5 231 63.2
BcaB06g28872 Brassica carinata HOM05D005690 ORTHO05D007075 1.1e-72 277.3 247 60.7
CARHR130040 Cardamine hirsuta HOM05D005690 ORTHO05D007075 1.1e-72 277.3 250 62.8
C04p64770 Brassica napus HOM05D005690 ORTHO05D007075 2.4e-72 276.2 251 61.4
CDE07G1130 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 3.2e-72 275.8 169 79.3
Sp4g18050 Schrenkiella parvula HOM05D005690 ORTHO05D007075 9.2e-72 274.2 249 62.7
Zm00001eb064810 Zea mays HOM05D005690 ORTHO05D007075 4.6e-71 271.9 224 64.7
A03p19730 Brassica napus HOM05D005690 ORTHO05D007075 6.0e-71 271.6 248 60.5
BcaC01g05707 Brassica carinata HOM05D005690 ORTHO05D007075 1.3e-70 270.4 245 61.2
C03p22980 Brassica napus HOM05D005690 ORTHO05D007075 1.3e-70 270.4 245 61.2
Thhalv10017166m.g Eutrema salsugineum HOM05D005690 ORTHO05D007075 3.0e-70 269.2 249 61.8
Os03g0853800 Oryza sativa ssp. japonica HOM05D005690 ORTHO05D007075 1.2e-68 263.8 163 78.5
BcaC02g07668 Brassica carinata HOM05D005690 ORTHO05D007075 4.7e-68 261.9 216 65.7
BcaB01g03881 Brassica carinata HOM05D005690 ORTHO05D007075 8.9e-67 257.7 252 59.1
CSS0000246 Camellia sinensis var. sinensis HOM05D005690 ORTHO05D007075 3.4e-66 255.8 203 67.5
SEGI_15078 Sequoiadendron giganteum HOM05D005690 ORTHO05D007075 9.9e-66 254.2 178 68.5
CiPaw.01G275500 Carya illinoinensis HOM05D005690 ORTHO05D007075 3.3e-53 212.6 205 57.1
Lj8C97T4 Lonicera japonica HOM05D005690 ORTHO05D007075 3.3e-53 212.6 121 81.8
Peaxi162Scf00108g00173 Petunia axillaris HOM05D005690 ORTHO05D007075 6.2e-52 208.4 122 80.3
Sc06g0001780 Simmondsia chinensis HOM05D005690 ORTHO05D007075 2.6e-50 203.0 121 79.3
Nitab4.5_0003072g0050 Nicotiana tabacum HOM05D005690 ORTHO05D007075 9.3e-48 194.5 186 54.8
Mapoly0033s0041 Marchantia polymorpha HOM05D005690 ORTHO05D007075 7.4e-45 184.9 210 44.3
Psat1g099440 Pisum sativum HOM05D005690 ORTHO05D007075 1.6e-44 183.7 166 57.8
AagrBONN_evm.TU.Sc2ySwM_362.1612 Anthoceros agrestis HOM05D005690 ORTHO05D007075 1.4e-43 180.6 161 52.8
BcaB01g03882 Brassica carinata HOM05D005690 ORTHO05D007075 4.0e-43 179.1 112 75.0
Pp3c10_15170 Physcomitrium patens HOM05D005690 ORTHO05D007075 4.9e-41 172.2 176 48.9
Mapoly0033s0042 Marchantia polymorpha HOM05D005690 ORTHO05D007075 2.1e-39 166.8 154 50.6
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 7.4e-37 158.3 174 48.9
SMO239G0063 Selaginella moellendorffii HOM05D005690 ORTHO05D007075 2.8e-28 129.8 176 37.5
Lalb_Chr01g0010161 Lupinus albus HOM05D005690 ORTHO05D007075 2.9e-25 119.8 69 81.2
Lalb_Chr01g0010151 Lupinus albus HOM05D005690 ORTHO05D007075 2.6e-18 96.7 113 53.1
CDE07G0610 Ceratophyllum demersum HOM05D005690 ORTHO05D007075 4.2e-16 89.4 124 46.0
Cre12.g540051 Chlamydomonas reinhardtii HOM05D005690 ORTHO05D007075 1.6e-15 87.4 154 31.2
Nn2g10688 Nelumbo nucifera HOM05D005690 ORTHO05D007075 5.9e-10 68.9 102 47.1
MCO03G451 Micromonas commoda HOM05D005690 ORTHO05D007075 2.2e-09 67.0 184 29.9
HanXRQChr10g0292531 Helianthus annuus HOM05D005690 ORTHO05D007075 6.7e-06 55.5 66 47.0


User provided reference genes

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