Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 4.6e-188 661.0 318 100.0
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 8.3e-153 543.9 317 80.1
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 1.3e-150 536.6 315 78.4
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.9e-149 532.7 320 77.8
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 4.2e-149 531.6 316 77.2
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 4.2e-149 531.6 315 78.7
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 5.5e-149 531.2 320 77.2
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.6e-148 529.6 320 77.5
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 2.8e-148 528.9 316 77.2
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 8.9e-147 523.9 315 76.5
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 1.2e-146 523.5 317 77.0
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 2.0e-146 522.7 317 76.0
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 5.7e-146 521.2 316 77.2
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 5.7e-146 521.2 316 74.7
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 7.5e-146 520.8 315 75.9
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 1.3e-145 520.0 316 76.3
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 3.7e-145 518.5 318 77.0
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 1.4e-144 516.5 316 76.6
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 3.1e-144 515.4 321 76.9
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 1.2e-143 513.5 316 75.0
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 1.2e-143 513.5 321 76.9
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 2.0e-143 512.7 316 75.9
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 2.7e-143 512.3 316 75.9
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 2.7e-143 512.3 315 74.9
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 3.5e-143 511.9 316 76.3
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 5.9e-143 511.1 320 74.7
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.0e-142 510.4 315 75.2
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 3.8e-142 508.4 317 75.1
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 5.0e-142 508.1 315 74.6
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 8.6e-142 507.3 316 75.9
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 1.1e-141 506.9 316 74.1
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 3.3e-141 505.4 318 74.8
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 3.3e-141 505.4 315 73.0
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 4.3e-141 505.0 319 74.3
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 1.2e-140 503.4 315 73.0
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 2.1e-140 502.7 315 72.7
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 2.1e-140 502.7 315 73.3
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 2.8e-140 502.3 303 77.9
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 8.0e-140 500.7 316 74.1
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 8.0e-140 500.7 369 66.4
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 1.0e-139 500.4 315 72.7
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 1.0e-139 500.4 314 74.5
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 4.0e-139 498.4 331 70.1
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 4.0e-139 498.4 316 74.4
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 5.2e-139 498.0 315 72.7
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 5.2e-139 498.0 316 73.4
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 5.2e-139 498.0 316 73.1
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 8.9e-139 497.3 316 71.8
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 1.2e-138 496.9 338 70.4
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 1.5e-138 496.5 316 74.4
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.5e-138 496.5 315 72.4
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 2.0e-138 496.1 316 74.1
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 2.0e-138 496.1 317 73.5
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 3.4e-138 495.4 316 71.2
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 4.4e-138 495.0 315 72.7
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 1.3e-137 493.4 315 71.4
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 1.7e-137 493.0 315 71.7
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.7e-137 493.0 315 74.0
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.7e-137 493.0 315 71.7
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 2.2e-137 492.7 368 64.1
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 2.2e-137 492.7 320 73.8
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 3.7e-137 491.9 317 74.1
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 4.9e-137 491.5 316 70.9
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 8.3e-137 490.7 315 71.1
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 1.1e-136 490.3 316 71.5
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 1.4e-136 490.0 317 71.6
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 1.4e-136 490.0 316 72.5
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.8e-136 489.6 315 73.3
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.8e-136 489.6 315 69.8
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.8e-136 489.6 315 69.8
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 3.2e-136 488.8 318 73.3
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 3.2e-136 488.8 316 72.2
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 4.1e-136 488.4 316 72.2
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 4.1e-136 488.4 314 72.3
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 4.1e-136 488.4 315 72.1
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 5.4e-136 488.0 316 71.2
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 9.2e-136 487.3 316 72.2
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 1.2e-135 486.9 316 71.8
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 1.2e-135 486.9 316 71.8
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 1.2e-135 486.9 316 70.9
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 2.0e-135 486.1 316 72.2
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 4.6e-135 485.0 315 72.7
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 1.7e-134 483.0 322 69.9
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 3.9e-134 481.9 316 69.6
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 5.0e-134 481.5 316 70.9
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 1.1e-133 480.3 316 69.9
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 1.5e-133 479.9 317 71.0
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 1.5e-133 479.9 316 70.6
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 1.9e-133 479.6 318 68.9
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.5e-133 479.2 315 71.1
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 3.3e-133 478.8 317 70.0
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 4.3e-133 478.4 316 68.0
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 5.6e-133 478.0 315 69.2
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 2.1e-132 476.1 316 70.6
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 2.1e-132 476.1 316 69.9
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.1e-132 476.1 313 69.6
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 3.6e-132 475.3 316 69.9
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 1.5e-130 469.9 315 68.6
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 4.4e-130 468.4 317 68.8
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 9.8e-130 467.2 307 71.0
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 1.7e-129 466.5 315 68.6
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 4.9e-129 464.9 315 68.6
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 1.4e-128 463.4 317 70.7
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 3.2e-128 462.2 315 66.7
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 4.1e-128 461.8 292 69.5
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 2.7e-127 459.1 315 66.7
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 2.7e-127 459.1 315 69.5
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.5e-127 458.8 315 69.2
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 3.5e-127 458.8 318 68.6
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 1.3e-126 456.8 315 67.6
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 3.9e-126 455.3 318 67.3
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 5.0e-126 454.9 404 58.2
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.7e-124 448.4 319 67.7
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 1.1e-123 447.2 315 68.3
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 1.8e-123 446.4 389 56.8
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 9.9e-122 440.7 335 61.5
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 2.9e-121 439.1 325 64.9
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 8.3e-121 437.6 322 64.6
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 4.6e-119 431.8 315 63.2
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 2.3e-118 429.5 315 62.5
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 5.6e-117 424.9 315 63.2
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 4.7e-116 421.8 289 70.6
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 2.0e-114 416.4 266 72.6
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.0e-114 416.4 289 68.5
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 4.9e-113 411.8 317 63.1
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 3.2e-112 409.1 336 58.3
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 9.2e-112 407.5 279 68.5
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 3.1e-107 392.5 321 59.8
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 6.9e-107 391.3 332 57.2
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 1.7e-105 386.7 304 65.1
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 3.8e-105 385.6 317 60.3
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.1e-104 384.0 322 59.6
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 1.4e-104 383.6 318 58.5
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 1.0e-102 377.5 317 58.0
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 6.6e-102 374.8 315 56.2
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 2.1e-95 353.2 292 58.2
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 7.9e-95 351.3 225 73.3
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 1.3e-94 350.5 242 67.8
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 4.9e-89 332.0 360 47.5
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 6.2e-84 315.1 199 74.4
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 3.9e-78 295.8 185 76.8
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.0e-73 281.2 180 73.3
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 2.5e-72 276.6 218 59.6
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 2.4e-67 260.0 305 48.2
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 5.3e-67 258.8 185 69.7
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 6.1e-63 245.4 165 71.5
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 5.1e-62 242.3 151 76.2
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 3.1e-59 233.0 144 74.3
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.3e-52 211.1 140 66.4
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 7.5e-45 185.3 146 58.9
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 3.5e-42 176.4 127 66.9
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 2.0e-37 160.6 100 72.0
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 4.8e-36 156.0 111 64.9
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.7e-33 147.5 124 57.3
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 5.5e-32 142.5 90 74.4
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 7.2e-32 142.1 105 69.5
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 1.5e-29 134.4 92 68.5
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 3.7e-28 129.8 69 82.6
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 1.0e-25 121.7 75 69.3
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 1.0e-25 121.7 90 60.0
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 8.6e-25 118.6 74 73.0
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 4.3e-24 116.3 67 76.1
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 3.6e-23 113.2 169 39.1
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 1.9e-19 100.9 72 68.1
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 4.3e-16 89.7 64 59.4
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 1.3e-12 78.2 42 83.3
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 1.7e-12 77.8 56 69.6
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 1.6e-10 71.2 51 64.7
PGR102G2199 Punica granatum HOM05D004085 ORTHO05D000487 4.7e-07 59.7 54 55.6
BolC7t43945H Brassica oleracea HOM05D004085 ORTHO05D005189 1.4e-06 58.2 43 72.1
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.3e-06 57.4 79 48.1
Medtr8g066150 Medicago truncatula HOM05D004085 ORTHO05D263454 6.8e-06 55.8 83 42.2


User provided reference genes

Program Settings